Wall clock time and date at job start Sat Apr 11 2020 03:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30828 * 126.46503 * 2 1 4 4 N 1.28915 * 109.74024 * 179.97438 * 3 2 1 5 5 C 1.29837 * 109.47512 * 359.96683 * 4 3 2 6 6 N 1.34699 * 126.46020 * 180.02562 * 2 1 3 7 7 C 1.46256 * 128.84722 * 0.17758 * 6 2 1 8 8 C 1.53315 * 108.72949 * 162.85902 * 7 6 2 9 9 H 1.08998 * 109.43714 * 290.27701 * 8 7 6 10 10 C 1.50695 * 109.45508 * 170.32600 * 8 7 6 11 11 O 1.21277 * 119.99909 * 359.89242 * 10 8 7 12 12 N 1.34781 * 119.99991 * 179.88914 * 10 8 7 13 13 C 1.46503 * 119.99836 * 180.02562 * 12 10 8 14 14 H 1.08993 * 109.47279 * 34.99857 * 13 12 10 15 15 C 1.50694 * 109.46902 * 155.00221 * 13 12 10 16 16 H 1.08002 * 120.00236 * 114.76638 * 15 13 12 17 17 C 1.37885 * 120.00198 * 295.03423 * 15 13 12 18 18 N 1.31510 * 120.00335 * 184.62055 * 17 15 13 19 19 Si 1.86802 * 119.99478 * 4.61938 * 17 15 13 20 20 H 1.48499 * 109.46902 * 84.91171 * 19 17 15 21 21 H 1.48500 * 109.46821 * 204.90873 * 19 17 15 22 22 H 1.48499 * 109.47174 * 324.90828 * 19 17 15 23 23 C 1.53005 * 109.46836 * 275.00083 * 13 12 10 24 24 F 1.39906 * 109.46894 * 305.01296 * 23 13 12 25 25 F 1.39896 * 109.47099 * 65.01757 * 23 13 12 26 26 F 1.39898 * 109.46723 * 185.01750 * 23 13 12 27 27 C 1.53147 * 109.57933 * 50.29270 * 8 7 6 28 28 C 1.50809 * 128.52432 * 180.09115 * 5 4 3 29 29 H 1.08997 * 109.47361 * 89.96854 * 1 2 3 30 30 H 1.08999 * 109.46978 * 209.97537 * 1 2 3 31 31 H 1.09007 * 109.46667 * 329.97308 * 1 2 3 32 32 H 1.09002 * 109.59627 * 43.08918 * 7 6 2 33 33 H 1.08997 * 109.59635 * 282.63525 * 7 6 2 34 34 H 0.97000 * 119.99843 * 0.02562 * 12 10 8 35 35 H 0.97000 * 120.00247 * 179.97438 * 18 17 15 36 36 H 1.09003 * 109.49464 * 50.51316 * 27 8 7 37 37 H 1.08991 * 109.49804 * 170.58067 * 27 8 7 38 38 H 1.09002 * 109.72568 * 44.48043 * 28 5 4 39 39 H 1.09003 * 109.72837 * 283.80199 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2846 1.0521 0.0000 4 7 3.5192 0.6812 0.0005 5 6 3.5815 -0.6157 0.0016 6 7 2.3075 -1.0833 -0.0005 7 6 1.9366 -2.4981 -0.0046 8 6 3.1549 -3.3252 -0.4314 9 1 3.3619 -3.1480 -1.4868 10 6 2.8687 -4.7888 -0.2149 11 8 1.7987 -5.1370 0.2375 12 7 3.8019 -5.7109 -0.5240 13 6 3.5235 -7.1338 -0.3139 14 1 2.4707 -7.3316 -0.5154 15 6 4.3764 -7.9554 -1.2458 16 1 5.1361 -8.6107 -0.8461 17 6 4.1906 -7.8663 -2.6092 18 7 4.8709 -8.6490 -3.4181 19 14 2.9726 -6.6340 -3.3073 20 1 3.6339 -5.3124 -3.4526 21 1 2.5026 -7.1011 -4.6362 22 1 1.8131 -6.5090 -2.3880 23 6 3.8446 -7.5078 1.1345 24 9 5.1645 -7.1483 1.4273 25 9 2.9746 -6.8298 1.9951 26 9 3.6883 -8.8875 1.3053 27 6 4.3718 -2.9146 0.4028 28 6 4.8051 -1.4973 0.0045 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5143 32 1 1.1202 -2.6599 -0.7086 33 1 1.6241 -2.7970 0.9959 34 1 4.6579 -5.4323 -0.8855 35 1 4.7399 -8.5866 -4.3772 36 1 4.1099 -2.9311 1.4608 37 1 5.1901 -3.6108 0.2197 38 1 5.5303 -1.1179 0.7244 39 1 5.2485 -1.5146 -0.9912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811886.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:15 Heat of formation + Delta-G solvation = -124.186548 kcal Electronic energy + Delta-G solvation = -29975.458907 eV Core-core repulsion = 25310.960346 eV Total energy + Delta-G solvation = -4664.498561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.25359 -46.77285 -46.73087 -43.42465 -39.90928 -36.94542 -35.18821 -34.28008 -32.73154 -31.78160 -30.67199 -29.18524 -27.49077 -25.18789 -25.05812 -23.40311 -21.78279 -21.34679 -20.45709 -19.57099 -18.41146 -17.76543 -17.43604 -17.10528 -16.68710 -16.60999 -16.04845 -15.67992 -15.13734 -14.90979 -14.45980 -14.25091 -14.04715 -13.72369 -13.67575 -13.62426 -13.28225 -13.20590 -13.14898 -12.94113 -12.91778 -12.86247 -12.83401 -12.44374 -12.26727 -11.91794 -11.67018 -11.42047 -11.34385 -11.22994 -10.84801 -10.43554 -10.40092 -10.22027 -10.03078 -9.72203 -9.14882 -9.06986 -8.73620 -6.65996 -4.80714 1.69350 2.26981 2.65900 2.75401 2.89468 3.08234 3.09750 3.31972 3.70192 3.91135 3.93916 4.12111 4.24929 4.36575 4.39672 4.70589 4.77102 4.82705 4.85792 4.97116 5.00535 5.05495 5.13417 5.18782 5.27399 5.35274 5.40386 5.48262 5.57641 5.69028 5.78158 5.87090 6.08009 6.20666 6.69370 6.73128 6.81077 7.65671 7.95704 8.34351 8.45345 8.64363 8.86541 10.42380 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.004213 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.275381 B = 6644.660074 C = 7269.893730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.302 5.302 4 N -0.293 5.293 5 C 0.175 3.825 6 N -0.468 5.468 7 C 0.124 3.876 8 C -0.130 4.130 9 H 0.109 0.891 10 C 0.511 3.489 11 O -0.534 6.534 12 N -0.711 5.711 13 C 0.204 3.796 14 H 0.094 0.906 15 C -0.539 4.539 16 H 0.097 0.903 17 C 0.097 3.903 18 N -0.858 5.858 19 Si 0.876 3.124 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.257 1.257 23 C 0.443 3.557 24 F -0.189 7.189 25 F -0.194 7.194 26 F -0.182 7.182 27 C -0.119 4.119 28 C -0.031 4.031 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.403 0.597 35 H 0.276 0.724 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.778 10.379 4.695 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.144 5.144 4 N -0.133 5.133 5 C -0.093 4.093 6 N -0.159 5.159 7 C 0.001 3.999 8 C -0.152 4.152 9 H 0.127 0.873 10 C 0.295 3.705 11 O -0.411 6.411 12 N -0.364 5.364 13 C 0.101 3.899 14 H 0.111 0.889 15 C -0.577 4.577 16 H 0.115 0.885 17 C -0.113 4.113 18 N -0.491 5.491 19 Si 0.703 3.297 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.181 1.181 23 C 0.388 3.612 24 F -0.171 7.171 25 F -0.176 7.176 26 F -0.163 7.163 27 C -0.157 4.157 28 C -0.071 4.071 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.240 0.760 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.085 11.466 4.853 13.104 hybrid contribution -0.485 -0.729 -0.517 1.017 sum -4.570 10.737 4.336 12.449 Atomic orbital electron populations 1.20223 0.83747 1.04606 1.04073 1.24651 0.97101 0.82768 1.04485 1.74455 0.96161 1.23731 1.20004 1.74027 1.12283 1.08056 1.18889 1.24738 0.87161 0.92542 1.04841 1.46037 1.07015 1.08599 1.54239 1.21791 0.97807 0.75004 1.05280 1.21721 0.96228 0.93857 1.03347 0.87289 1.20266 0.85175 0.86962 0.78098 1.90707 1.24202 1.81870 1.44361 1.47653 1.18265 1.07097 1.63395 1.20354 1.02142 0.80200 0.87217 0.88873 1.20798 1.21360 1.25071 0.90490 0.88546 1.24923 0.94902 0.94931 0.96563 1.69851 1.39034 1.35613 1.04554 0.86866 0.82337 0.81418 0.79126 1.19697 1.21170 1.18144 1.21407 0.73733 0.74433 0.91647 1.93089 1.37513 1.91665 1.94825 1.93145 1.70050 1.80251 1.74108 1.93122 1.95323 1.31606 1.96285 1.21749 0.97078 0.96368 1.00525 1.20249 0.91140 0.90992 1.04711 0.89608 0.90222 0.88703 0.87972 0.87715 0.76021 0.91351 0.90080 0.88432 0.87618 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.29 36.01 0.37 -0.19 16 2 C 0.18 2.26 8.07 -155.45 -1.25 1.01 16 3 N -0.30 -4.76 12.23 32.70 0.40 -4.36 16 4 N -0.29 -4.66 12.21 32.76 0.40 -4.26 16 5 C 0.17 2.31 7.75 -155.30 -1.20 1.10 16 6 N -0.47 -5.84 3.11 -110.86 -0.35 -6.18 16 7 C 0.12 1.43 5.46 -4.01 -0.02 1.41 16 8 C -0.13 -1.56 2.54 -91.53 -0.23 -1.80 16 9 H 0.11 1.25 8.12 -51.93 -0.42 0.83 16 10 C 0.51 8.22 6.35 -10.99 -0.07 8.15 16 11 O -0.53 -10.07 14.40 5.56 0.08 -9.99 16 12 N -0.71 -12.32 2.70 -54.93 -0.15 -12.47 16 13 C 0.20 4.19 1.42 -69.08 -0.10 4.09 16 14 H 0.09 2.06 6.53 -51.93 -0.34 1.72 16 15 C -0.54 -12.74 8.65 -34.44 -0.30 -13.03 16 16 H 0.10 2.52 7.95 -52.49 -0.42 2.10 16 17 C 0.10 2.34 5.47 -17.82 -0.10 2.24 16 18 N -0.86 -22.36 13.96 55.43 0.77 -21.59 16 19 Si 0.88 18.38 25.77 -169.99 -4.38 14.00 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.26 -5.50 6.57 56.52 0.37 -5.13 16 23 C 0.44 8.85 2.79 37.16 0.10 8.95 16 24 F -0.19 -3.64 16.97 2.25 0.04 -3.60 16 25 F -0.19 -3.81 15.83 2.25 0.04 -3.77 16 26 F -0.18 -3.78 16.86 2.25 0.04 -3.74 16 27 C -0.12 -1.19 5.23 -26.42 -0.14 -1.33 16 28 C -0.03 -0.30 6.34 -27.59 -0.17 -0.48 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.55 8.04 -51.93 -0.42 0.14 16 31 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.22 7.79 -51.93 -0.40 0.82 16 34 H 0.40 6.27 7.91 -40.82 -0.32 5.95 16 35 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 37 H 0.10 0.89 7.32 -51.93 -0.38 0.51 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -30.10 335.97 -5.56 -35.66 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.40 Total: 5.11 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -3.11 Total: 10.12 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 1.08 Total: -48.86 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 9 Polarization: -11.23 SS G_CDS: 0.11 Total: -11.11 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.38 Total: 14.00 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.10 -5.56 -35.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811886.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.522 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds