Wall clock time and date at job start Sat Apr 11 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 126.46539 * 2 1 4 4 N 1.28906 * 109.74354 * 179.83056 * 3 2 1 5 5 C 1.29838 * 109.47444 * 0.39309 * 4 3 2 6 6 N 1.34693 * 126.46191 * 180.31139 * 2 1 3 7 7 C 1.46256 * 128.84769 * 0.10274 * 6 2 1 8 8 C 1.53317 * 108.73124 * 162.93218 * 7 6 2 9 9 H 1.09009 * 109.45350 * 290.23306 * 8 7 6 10 10 C 1.50698 * 109.43534 * 170.28881 * 8 7 6 11 11 O 1.21280 * 119.99476 * 359.89849 * 10 8 7 12 12 N 1.34776 * 120.00092 * 179.89170 * 10 8 7 13 13 C 1.46508 * 119.99570 * 180.02562 * 12 10 8 14 14 H 1.08997 * 109.47478 * 325.00113 * 13 12 10 15 15 C 1.50701 * 109.46738 * 205.00154 * 13 12 10 16 16 H 1.07992 * 120.00180 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99656 * 180.02562 * 15 13 12 18 18 N 1.31513 * 120.00492 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99805 * 180.02562 * 17 15 13 20 20 H 1.48491 * 109.47216 * 60.00151 * 19 17 15 21 21 H 1.48504 * 109.47214 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47010 * 299.99825 * 19 17 15 23 23 C 1.53000 * 109.46988 * 85.00361 * 13 12 10 24 24 F 1.39900 * 109.47161 * 59.99607 * 23 13 12 25 25 F 1.39899 * 109.47108 * 179.97438 * 23 13 12 26 26 F 1.39896 * 109.47380 * 299.99792 * 23 13 12 27 27 C 1.53149 * 109.58836 * 50.26688 * 8 7 6 28 28 C 1.50800 * 128.52334 * 179.89447 * 5 4 3 29 29 H 1.09002 * 109.47152 * 269.68776 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68877 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68857 * 1 2 3 32 32 H 1.08996 * 109.59548 * 282.70331 * 7 6 2 33 33 H 1.08993 * 109.59507 * 43.16199 * 7 6 2 34 34 H 0.96995 * 120.00420 * 0.02562 * 12 10 8 35 35 H 0.96996 * 120.00606 * 179.97438 * 18 17 15 36 36 H 1.08994 * 109.49764 * 170.61548 * 27 8 7 37 37 H 1.08995 * 109.52873 * 50.52654 * 27 8 7 38 38 H 1.09007 * 109.73103 * 283.68711 * 28 5 4 39 39 H 1.09007 * 109.73449 * 44.36399 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0522 0.0000 4 7 3.5192 0.6813 0.0036 5 6 3.5815 -0.6156 -0.0024 6 7 2.3075 -1.0833 -0.0059 7 6 1.9366 -2.4980 -0.0156 8 6 3.1550 -3.3234 -0.4454 9 1 3.3620 -3.1429 -1.5003 10 6 2.8687 -4.7877 -0.2335 11 8 1.7986 -5.1371 0.2178 12 7 3.8017 -5.7089 -0.5457 13 6 3.5230 -7.1325 -0.3402 14 1 2.9069 -7.2573 0.5503 15 6 4.8206 -7.8776 -0.1618 16 1 5.7589 -7.3442 -0.1975 17 6 4.8098 -9.2405 0.0469 18 7 3.6672 -9.8902 0.0899 19 14 6.4183 -10.1641 0.2688 20 1 7.1393 -9.6260 1.4501 21 1 6.1360 -11.6073 0.4757 22 1 7.2583 -9.9935 -0.9439 23 6 2.7792 -7.6873 -1.5567 24 9 3.5699 -7.5271 -2.6997 25 9 2.5136 -9.0468 -1.3607 26 9 1.5746 -6.9955 -1.7223 27 6 4.3720 -2.9157 0.3901 28 6 4.8051 -1.4970 -0.0035 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 1.6240 -2.8008 0.9837 33 1 1.1204 -2.6570 -0.7202 34 1 4.6576 -5.4294 -0.9064 35 1 3.6596 -10.8490 0.2364 36 1 5.1906 -3.6109 0.2039 37 1 4.1110 -2.9361 1.4481 38 1 5.2481 -1.5105 -0.9994 39 1 5.5307 -1.1204 0.7176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928811889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:24 Heat of formation + Delta-G solvation = -104.644957 kcal Electronic energy + Delta-G solvation = -29669.034107 eV Core-core repulsion = 25005.382933 eV Total energy + Delta-G solvation = -4663.651174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.50273 -46.16129 -45.75774 -43.40928 -39.78025 -36.86464 -34.95821 -34.25677 -32.78731 -31.70425 -30.61245 -28.55344 -27.47496 -25.09917 -24.62901 -23.38980 -21.85586 -21.33977 -20.31771 -19.57099 -17.90804 -17.09634 -17.00830 -16.78652 -16.69106 -16.34345 -15.78671 -15.26582 -15.13072 -14.83731 -14.52820 -14.23995 -13.98105 -13.64610 -13.30972 -13.26522 -13.08266 -12.82081 -12.67937 -12.55792 -12.42511 -12.33937 -12.27977 -12.12440 -11.95950 -11.66028 -11.41777 -11.30413 -11.22841 -10.98136 -10.93941 -10.53987 -10.40834 -10.19554 -9.84143 -9.52146 -9.05800 -8.86194 -8.51056 -6.36635 -4.62065 1.71174 2.29403 2.76475 2.81934 3.11196 3.16809 3.17914 3.44126 3.93376 4.08801 4.14518 4.29738 4.35307 4.42861 4.47106 4.77999 4.80140 4.85393 4.98818 5.11172 5.14683 5.22886 5.35895 5.42165 5.51134 5.58418 5.67750 5.70058 5.71025 5.80256 5.89749 6.04794 6.09563 6.72557 6.75104 6.89786 7.28425 7.49084 8.02679 8.32754 8.56216 8.65793 9.06620 10.54748 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.003349 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.399820 B = 8357.548670 C = 9173.746084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.178 3.822 3 N -0.303 5.303 4 N -0.294 5.294 5 C 0.174 3.826 6 N -0.467 5.467 7 C 0.124 3.876 8 C -0.123 4.123 9 H 0.109 0.891 10 C 0.517 3.483 11 O -0.533 6.533 12 N -0.704 5.704 13 C 0.245 3.755 14 H 0.087 0.913 15 C -0.555 4.555 16 H 0.078 0.922 17 C 0.066 3.934 18 N -0.838 5.838 19 Si 0.916 3.084 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.416 3.584 24 F -0.209 7.209 25 F -0.135 7.135 26 F -0.219 7.219 27 C -0.119 4.119 28 C -0.031 4.031 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.270 0.730 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 11.075 -0.704 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.144 5.144 4 N -0.133 5.133 5 C -0.094 4.094 6 N -0.158 5.158 7 C 0.001 3.999 8 C -0.145 4.145 9 H 0.127 0.873 10 C 0.301 3.699 11 O -0.409 6.409 12 N -0.353 5.353 13 C 0.140 3.860 14 H 0.104 0.896 15 C -0.592 4.592 16 H 0.096 0.904 17 C -0.143 4.143 18 N -0.471 5.471 19 Si 0.742 3.258 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.198 1.198 23 C 0.360 3.640 24 F -0.191 7.191 25 F -0.116 7.116 26 F -0.201 7.201 27 C -0.157 4.157 28 C -0.071 4.071 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.235 0.765 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.338 12.016 -0.366 12.096 hybrid contribution 0.566 -1.930 -0.464 2.064 sum -0.772 10.086 -0.830 10.150 Atomic orbital electron populations 1.20224 0.83739 1.04550 1.04121 1.24651 0.97112 0.82779 1.04418 1.74455 0.96152 1.23750 1.20075 1.74020 1.12314 1.08100 1.18885 1.24733 0.87181 0.92536 1.04961 1.46037 1.06973 1.08649 1.54136 1.21800 0.97858 0.74899 1.05352 1.21629 0.96036 0.93680 1.03161 0.87326 1.19960 0.84722 0.86720 0.78529 1.90737 1.23934 1.81710 1.44554 1.46046 1.17693 1.07233 1.64332 1.19783 0.98451 0.76279 0.91490 0.89557 1.20810 0.90700 0.92977 1.54736 0.90387 1.25078 0.97740 0.97431 0.94069 1.70371 1.24658 1.09845 1.42247 0.86260 0.82042 0.78498 0.79021 1.19706 1.20818 1.19753 1.23157 0.76411 0.78391 0.86047 1.92996 1.75009 1.95708 1.55347 1.93415 1.93794 1.30348 1.94090 1.93064 1.50150 1.80445 1.96412 1.21756 0.97144 0.96203 1.00645 1.20246 0.91127 0.91085 1.04609 0.89541 0.90244 0.88761 0.87743 0.87872 0.76517 0.91909 0.88468 0.90093 0.88363 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.29 36.01 0.37 -0.18 16 2 C 0.18 2.22 8.07 -155.45 -1.25 0.96 16 3 N -0.30 -4.68 12.23 32.70 0.40 -4.28 16 4 N -0.29 -4.55 12.21 32.76 0.40 -4.15 16 5 C 0.17 2.20 7.75 -155.30 -1.20 1.00 16 6 N -0.47 -5.62 3.11 -110.87 -0.35 -5.96 16 7 C 0.12 1.37 5.48 -4.01 -0.02 1.35 16 8 C -0.12 -1.38 2.54 -91.53 -0.23 -1.61 16 9 H 0.11 1.08 8.12 -51.92 -0.42 0.66 16 10 C 0.52 8.25 6.68 -10.99 -0.07 8.18 16 11 O -0.53 -10.47 14.40 5.56 0.08 -10.39 16 12 N -0.70 -12.14 4.81 -54.93 -0.26 -12.41 16 13 C 0.25 5.50 2.21 -69.08 -0.15 5.35 16 14 H 0.09 2.19 7.58 -51.93 -0.39 1.79 16 15 C -0.56 -13.00 8.47 -34.44 -0.29 -13.29 16 16 H 0.08 1.70 7.74 -52.49 -0.41 1.29 16 17 C 0.07 1.62 5.20 -17.82 -0.09 1.52 16 18 N -0.84 -21.76 9.50 55.43 0.53 -21.24 16 19 Si 0.92 18.95 29.54 -169.99 -5.02 13.93 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 C 0.42 9.88 2.81 37.16 0.10 9.98 16 24 F -0.21 -4.78 16.94 2.25 0.04 -4.75 16 25 F -0.14 -3.54 12.91 2.25 0.03 -3.51 16 26 F -0.22 -5.10 15.68 2.25 0.04 -5.07 16 27 C -0.12 -1.10 5.22 -26.41 -0.14 -1.24 16 28 C -0.03 -0.28 6.33 -27.59 -0.17 -0.45 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.54 7.76 -51.93 -0.40 0.14 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.21 7.79 -51.93 -0.40 0.80 16 33 H 0.10 1.08 7.85 -51.93 -0.41 0.67 16 34 H 0.40 5.76 7.88 -40.82 -0.32 5.44 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.10 0.79 7.32 -51.93 -0.38 0.41 16 37 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -31.31 334.71 -6.62 -37.93 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.39 Total: 3.27 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: -3.16 Total: 11.57 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.72 Total: -48.03 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 9 Polarization: -13.43 SS G_CDS: 0.10 Total: -13.33 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.31 -6.62 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928811889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.715 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds