Wall clock time and date at job start Sat Apr 11 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48496 * 109.47227 * 240.00010 * 3 2 1 5 5 H 1.48505 * 109.47370 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47123 * 120.00323 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36933 * 120.00459 * 343.12018 * 7 2 1 10 10 C 1.46927 * 120.62742 * 331.88447 * 9 7 2 11 11 C 1.53196 * 108.77685 * 233.32769 * 10 9 7 12 12 C 1.53039 * 109.31408 * 305.37008 * 11 10 9 13 13 C 1.53044 * 109.54148 * 61.35733 * 12 11 10 14 14 H 1.09007 * 109.49216 * 58.59115 * 13 12 11 15 15 N 1.46499 * 109.50019 * 178.68444 * 13 12 11 16 16 C 1.34771 * 120.00083 * 205.00372 * 15 13 12 17 17 O 1.21631 * 120.00271 * 0.02562 * 16 15 13 18 18 C 1.47322 * 120.00342 * 179.97438 * 16 15 13 19 19 N 1.35765 * 126.23142 * 0.02562 * 18 16 15 20 20 C 1.30172 * 108.86623 * 179.97438 * 19 18 16 21 21 N 1.35852 * 109.00157 * 0.02562 * 20 19 18 22 22 H 0.97002 * 126.13188 * 180.02562 * 21 20 19 23 23 C 1.35373 * 107.73161 * 359.75049 * 21 20 19 24 24 C 1.50702 * 126.56817 * 180.24457 * 23 21 20 25 25 F 1.39896 * 109.46642 * 0.17216 * 24 23 21 26 26 F 1.39893 * 109.47245 * 120.17043 * 24 23 21 27 27 F 1.39894 * 109.46954 * 240.17592 * 24 23 21 28 28 C 1.46927 * 120.63441 * 151.60044 * 9 7 2 29 29 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.59079 * 353.11675 * 10 9 7 31 31 H 1.09005 * 109.58588 * 113.54517 * 10 9 7 32 32 H 1.09003 * 109.49365 * 65.31610 * 11 10 9 33 33 H 1.08992 * 109.50151 * 185.41542 * 11 10 9 34 34 H 1.08992 * 109.46093 * 181.38255 * 12 11 10 35 35 H 1.09008 * 109.45783 * 301.35581 * 12 11 10 36 36 H 0.97003 * 119.99702 * 25.00369 * 15 13 12 37 37 H 1.07999 * 125.49730 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.59069 * 246.45795 * 28 9 7 39 39 H 1.08998 * 109.58537 * 6.88094 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3626 0.3433 10 6 0.2248 -2.3414 1.2635 11 6 0.4920 -3.3262 2.4061 12 6 0.8037 -4.7062 1.8224 13 6 2.0605 -4.6222 0.9531 14 1 2.8956 -4.2633 1.5547 15 7 2.3761 -5.9498 0.4201 16 6 3.6418 -6.2518 0.0695 17 8 4.5223 -5.4223 0.1959 18 6 3.9593 -7.5871 -0.4659 19 7 3.0808 -8.6040 -0.6588 20 6 3.7215 -9.6271 -1.1458 21 7 5.0337 -9.3032 -1.2822 22 1 5.7334 -9.8823 -1.6229 23 6 5.1887 -8.0253 -0.8631 24 6 6.4737 -7.2385 -0.8373 25 9 7.5168 -8.0331 -1.3246 26 9 6.3400 -6.1007 -1.6401 27 9 6.7571 -6.8514 0.4768 28 6 1.8110 -3.6521 -0.2059 29 1 -0.4850 0.8400 0.0004 30 1 0.0999 -1.3372 1.6685 31 1 -0.6785 -2.6373 0.7298 32 1 1.3419 -2.9795 2.9940 33 1 -0.3896 -3.3917 3.0437 34 1 0.9702 -5.4145 2.6338 35 1 -0.0365 -5.0414 1.2142 36 1 1.6739 -6.6115 0.3197 37 1 3.2810 -10.5800 -1.3997 38 1 1.0372 -4.0549 -0.8594 39 1 2.7328 -3.5126 -0.7706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007501310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:58 Heat of formation + Delta-G solvation = -103.943666 kcal Electronic energy + Delta-G solvation = -29281.616611 eV Core-core repulsion = 24617.995847 eV Total energy + Delta-G solvation = -4663.620764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.29813 -47.90365 -47.64924 -42.78066 -39.37962 -37.23788 -34.33083 -33.47373 -32.27510 -31.30048 -30.38990 -28.71978 -26.26530 -25.21165 -23.70093 -22.47516 -22.05143 -21.46332 -20.34901 -19.75628 -19.12201 -18.62656 -18.36729 -17.25663 -16.71889 -16.15990 -15.89128 -15.73474 -14.86959 -14.69108 -14.55888 -14.49061 -14.47240 -14.14640 -13.93779 -13.84193 -13.82243 -13.64803 -13.32657 -13.02441 -12.79268 -12.34264 -12.30845 -11.76074 -11.04023 -10.97500 -10.85445 -10.78815 -10.72046 -10.21300 -10.17305 -10.09420 -9.84020 -9.59235 -9.56258 -9.42450 -8.75170 -8.33250 -6.59790 -5.71636 -3.14047 0.76611 1.85406 1.97608 2.59957 3.24327 3.38961 3.45658 3.46667 3.50599 3.54249 3.85256 4.03628 4.19837 4.51211 4.57810 4.79658 5.13352 5.35993 5.45154 5.60012 5.65647 5.69332 5.80501 6.14860 6.22249 6.32129 6.47205 6.59509 6.67778 6.72276 6.76673 6.90964 7.02716 7.10664 7.42771 7.71113 7.79277 7.90004 8.39029 8.53650 9.29268 9.91410 10.47512 11.37090 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.003375 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.739834 B = 8294.692250 C = 9423.847575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.168 3.832 11 C -0.139 4.139 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.089 0.911 15 N -0.699 5.699 16 C 0.585 3.415 17 O -0.520 6.520 18 C 0.034 3.966 19 N -0.459 5.459 20 C 0.228 3.772 21 N -0.542 5.542 22 H 0.432 0.568 23 C -0.061 4.061 24 C 0.553 3.447 25 F -0.186 7.186 26 F -0.150 7.150 27 F -0.153 7.153 28 C 0.142 3.858 29 H 0.253 0.747 30 H 0.088 0.912 31 H 0.019 0.981 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.404 0.596 37 H 0.230 0.770 38 H 0.018 0.982 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 -24.031 -1.166 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.107 0.893 15 N -0.349 5.349 16 C 0.368 3.632 17 O -0.395 6.395 18 C -0.100 4.100 19 N -0.178 5.178 20 C -0.058 4.058 21 N -0.145 5.145 22 H 0.272 0.728 23 C -0.182 4.182 24 C 0.497 3.503 25 F -0.168 7.168 26 F -0.131 7.131 27 F -0.134 7.134 28 C 0.014 3.986 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.238 0.762 37 H 0.246 0.754 38 H 0.036 0.964 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.699 -23.135 -0.879 24.398 hybrid contribution 1.356 0.018 -0.533 1.457 sum 9.055 -23.116 -1.412 24.867 Atomic orbital electron populations 1.70029 1.05228 1.25538 1.54169 1.25022 0.95284 0.98351 1.00909 0.86353 0.78886 0.83218 0.78252 1.20861 1.21694 1.20966 1.19195 0.92656 0.84605 1.41485 0.91568 1.43997 1.35617 1.01228 1.50158 1.20837 0.88590 0.98333 0.88025 1.22181 1.00450 0.95210 1.00059 1.21676 0.96701 0.98590 0.98292 1.21834 0.98085 0.80917 0.97132 0.89303 1.45891 1.08578 1.16535 1.63857 1.16834 0.83814 0.84055 0.78545 1.90916 1.46674 1.48025 1.53866 1.20857 0.88452 0.96126 1.04559 1.70831 1.31262 0.99119 1.16632 1.25532 0.78983 1.00733 1.00509 1.42909 1.12190 1.10672 1.48724 0.72756 1.20764 0.96309 0.88585 1.12552 1.16841 0.80488 0.77722 0.75265 1.93174 1.61209 1.74133 1.88262 1.93319 1.95551 1.51148 1.73069 1.93295 1.93658 1.91269 1.35142 1.21190 0.98100 0.86755 0.92525 0.93663 0.89338 0.96298 0.92390 0.92696 0.93000 0.92123 0.76157 0.75422 0.96394 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.68 11.20 55.49 0.62 -26.05 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 22.43 29.59 -169.99 -5.03 17.40 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -7.16 9.58 -15.06 -0.14 -7.31 16 8 H 0.07 1.91 7.89 -52.48 -0.41 1.50 16 9 N -0.59 -15.27 2.99 -172.32 -0.52 -15.78 16 10 C 0.17 4.03 5.29 -3.71 -0.02 4.01 16 11 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 12 C -0.11 -1.91 5.35 -26.69 -0.14 -2.06 16 13 C 0.13 2.34 2.60 -67.81 -0.18 2.17 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 15 N -0.70 -11.13 5.08 -54.79 -0.28 -11.41 16 16 C 0.58 9.85 7.78 -12.57 -0.10 9.76 16 17 O -0.52 -10.44 13.58 5.25 0.07 -10.37 16 18 C 0.03 0.45 6.98 -83.09 -0.58 -0.13 16 19 N -0.46 -4.95 11.01 -11.03 -0.12 -5.08 16 20 C 0.23 1.40 13.04 -89.90 -1.17 0.23 16 21 N -0.54 -3.48 5.98 -10.11 -0.06 -3.54 16 22 H 0.43 1.17 8.77 -40.82 -0.36 0.81 16 23 C -0.06 -0.69 6.50 -81.68 -0.53 -1.23 16 24 C 0.55 7.00 2.81 36.01 0.10 7.11 16 25 F -0.19 -1.87 17.03 2.25 0.04 -1.83 16 26 F -0.15 -2.28 16.18 2.25 0.04 -2.24 16 27 F -0.15 -2.22 16.17 2.25 0.04 -2.19 16 28 C 0.14 3.20 6.09 -3.71 -0.02 3.18 16 29 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.40 5.51 8.32 -40.82 -0.34 5.17 16 37 H 0.23 0.18 8.06 -52.49 -0.42 -0.24 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 1.43 7.93 -51.93 -0.41 1.01 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -34.77 338.92 -7.45 -42.22 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.33 Total: 0.85 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: -3.03 Total: 12.91 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.35 Total: -61.86 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 0.11 Total: -6.26 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.77 -7.45 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007501310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.726 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds