Wall clock time and date at job start Sat Apr 11 2020 03:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48496 * 109.47227 * 240.00010 * 3 2 1 5 5 H 1.48505 * 109.47370 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47123 * 120.00323 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36933 * 120.00459 * 343.12018 * 7 2 1 10 10 C 1.46927 * 120.62742 * 331.88447 * 9 7 2 11 11 C 1.53196 * 108.77685 * 233.32769 * 10 9 7 12 12 C 1.53039 * 109.31408 * 305.37008 * 11 10 9 13 13 C 1.53044 * 109.54148 * 61.35733 * 12 11 10 14 14 H 1.09007 * 109.49216 * 58.59115 * 13 12 11 15 15 N 1.46499 * 109.50019 * 178.68444 * 13 12 11 16 16 C 1.34771 * 120.00083 * 205.00372 * 15 13 12 17 17 O 1.21631 * 120.00271 * 0.02562 * 16 15 13 18 18 C 1.47322 * 120.00342 * 179.97438 * 16 15 13 19 19 N 1.35765 * 126.23142 * 0.02562 * 18 16 15 20 20 C 1.30172 * 108.86623 * 179.97438 * 19 18 16 21 21 N 1.35852 * 109.00157 * 0.02562 * 20 19 18 22 22 H 0.97002 * 126.13188 * 180.02562 * 21 20 19 23 23 C 1.35373 * 107.73161 * 359.75049 * 21 20 19 24 24 C 1.50702 * 126.56817 * 180.24457 * 23 21 20 25 25 F 1.39896 * 109.46642 * 0.17216 * 24 23 21 26 26 F 1.39893 * 109.47245 * 120.17043 * 24 23 21 27 27 F 1.39894 * 109.46954 * 240.17592 * 24 23 21 28 28 C 1.46927 * 120.63441 * 151.60044 * 9 7 2 29 29 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.59079 * 353.11675 * 10 9 7 31 31 H 1.09005 * 109.58588 * 113.54517 * 10 9 7 32 32 H 1.09003 * 109.49365 * 65.31610 * 11 10 9 33 33 H 1.08992 * 109.50151 * 185.41542 * 11 10 9 34 34 H 1.08992 * 109.46093 * 181.38255 * 12 11 10 35 35 H 1.09008 * 109.45783 * 301.35581 * 12 11 10 36 36 H 0.97003 * 119.99702 * 25.00369 * 15 13 12 37 37 H 1.07999 * 125.49730 * 179.97438 * 20 19 18 38 38 H 1.08999 * 109.59069 * 246.45795 * 28 9 7 39 39 H 1.08998 * 109.58537 * 6.88094 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3626 0.3433 10 6 0.2248 -2.3414 1.2635 11 6 0.4920 -3.3262 2.4061 12 6 0.8037 -4.7062 1.8224 13 6 2.0605 -4.6222 0.9531 14 1 2.8956 -4.2633 1.5547 15 7 2.3761 -5.9498 0.4201 16 6 3.6418 -6.2518 0.0695 17 8 4.5223 -5.4223 0.1959 18 6 3.9593 -7.5871 -0.4659 19 7 3.0808 -8.6040 -0.6588 20 6 3.7215 -9.6271 -1.1458 21 7 5.0337 -9.3032 -1.2822 22 1 5.7334 -9.8823 -1.6229 23 6 5.1887 -8.0253 -0.8631 24 6 6.4737 -7.2385 -0.8373 25 9 7.5168 -8.0331 -1.3246 26 9 6.3400 -6.1007 -1.6401 27 9 6.7571 -6.8514 0.4768 28 6 1.8110 -3.6521 -0.2059 29 1 -0.4850 0.8400 0.0004 30 1 0.0999 -1.3372 1.6685 31 1 -0.6785 -2.6373 0.7298 32 1 1.3419 -2.9795 2.9940 33 1 -0.3896 -3.3917 3.0437 34 1 0.9702 -5.4145 2.6338 35 1 -0.0365 -5.0414 1.2142 36 1 1.6739 -6.6115 0.3197 37 1 3.2810 -10.5800 -1.3997 38 1 1.0372 -4.0549 -0.8594 39 1 2.7328 -3.5126 -0.7706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007501310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:57 Heat of formation + Delta-G solvation = -128.623768 kcal Electronic energy + Delta-G solvation = -29282.686820 eV Core-core repulsion = 24617.995847 eV Total energy + Delta-G solvation = -4664.690973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.30049 -48.86720 -48.74542 -43.51313 -40.76544 -38.90187 -35.97380 -34.47014 -33.84238 -32.33332 -32.17768 -30.31875 -27.30962 -27.19814 -24.86874 -23.86632 -23.27730 -22.81599 -21.44340 -21.11004 -20.40431 -19.65604 -19.39164 -18.71094 -18.21579 -17.31033 -16.99052 -16.78009 -16.69585 -15.90924 -15.74974 -15.64980 -15.54402 -15.31774 -15.19954 -15.14305 -14.95320 -14.91909 -14.86406 -14.70993 -14.19880 -14.00823 -13.73290 -13.39974 -13.01979 -12.72516 -12.57744 -12.14725 -11.97066 -11.79983 -11.71590 -11.60314 -11.51779 -11.30736 -11.16985 -10.60625 -10.31306 -10.05679 -8.68329 -7.89518 -5.35665 -0.13707 1.03547 1.25642 1.45147 1.47559 1.55041 1.78511 2.07843 2.24616 2.51184 2.59311 2.99529 3.17470 3.18917 3.24650 3.71475 3.83314 3.89964 4.02037 4.11904 4.26727 4.42163 4.48863 4.57566 4.81548 4.87764 4.93048 5.03315 5.13422 5.15428 5.28032 5.45241 5.55337 5.64037 5.77447 6.01190 6.33607 6.38062 6.60709 7.12716 7.16138 7.82816 8.33460 9.16084 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.016411 B = 0.003375 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.739834 B = 8294.692250 C = 9423.847575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.042 4.042 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.270 4.270 8 H 0.053 0.947 9 N -0.606 5.606 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.142 3.858 14 H 0.063 0.937 15 N -0.689 5.689 16 C 0.578 3.422 17 O -0.563 6.563 18 C 0.007 3.993 19 N -0.487 5.487 20 C 0.263 3.737 21 N -0.521 5.521 22 H 0.452 0.548 23 C -0.064 4.064 24 C 0.549 3.451 25 F -0.170 7.170 26 F -0.171 7.171 27 F -0.168 7.168 28 C 0.146 3.854 29 H 0.253 0.747 30 H 0.055 0.945 31 H 0.005 0.995 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.418 0.582 37 H 0.289 0.711 38 H 0.019 0.981 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.809 -27.262 -1.073 28.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.238 4.238 3 Si 0.793 3.207 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.400 4.400 8 H 0.070 0.930 9 N -0.330 5.330 10 C 0.047 3.953 11 C -0.168 4.168 12 C -0.142 4.142 13 C 0.036 3.964 14 H 0.081 0.919 15 N -0.339 5.339 16 C 0.364 3.636 17 O -0.441 6.441 18 C -0.126 4.126 19 N -0.206 5.206 20 C -0.023 4.023 21 N -0.125 5.125 22 H 0.297 0.703 23 C -0.187 4.187 24 C 0.494 3.506 25 F -0.151 7.151 26 F -0.152 7.152 27 F -0.150 7.150 28 C 0.019 3.981 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.255 0.745 37 H 0.304 0.696 38 H 0.037 0.963 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.478 -26.444 -0.796 27.493 hybrid contribution 1.461 0.899 -0.654 1.836 sum 8.939 -25.546 -1.450 27.103 Atomic orbital electron populations 1.70159 1.06362 1.26096 1.54823 1.25722 0.96121 1.01166 1.00765 0.85378 0.77726 0.79319 0.78249 1.20512 1.21115 1.20502 1.19373 0.92456 0.86289 1.41927 0.92958 1.44225 1.36058 1.01620 1.51119 1.20724 0.87474 0.98079 0.89019 1.22017 1.01499 0.95034 0.98266 1.21610 0.95717 0.97851 0.99003 1.21349 0.98355 0.81405 0.95327 0.91896 1.45665 1.09060 1.15541 1.63650 1.17376 0.83316 0.85276 0.77682 1.90888 1.47796 1.49873 1.55519 1.20338 0.89993 0.95489 1.06796 1.70795 1.31660 0.99587 1.18587 1.26708 0.78075 1.01049 0.96448 1.42903 1.13240 1.08888 1.47478 0.70346 1.20445 0.94774 0.90344 1.13102 1.16997 0.81720 0.77519 0.74409 1.93198 1.60611 1.73350 1.87939 1.93272 1.95762 1.52624 1.73566 1.93257 1.93895 1.91530 1.36280 1.21192 0.96461 0.86559 0.93904 0.93817 0.92630 0.97693 0.93269 0.89521 0.89485 0.90644 0.74486 0.69601 0.96305 0.95150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.18 11.20 21.65 0.24 -55.94 16 2 C -0.04 -2.45 4.92 84.86 0.42 -2.03 16 3 Si 0.97 47.21 29.59 68.60 2.03 49.24 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.27 -16.15 9.58 84.03 0.81 -15.34 16 8 H 0.05 3.19 7.89 -2.91 -0.02 3.17 16 9 N -0.61 -32.73 2.99 -699.10 -2.09 -34.83 16 10 C 0.17 8.46 5.29 86.36 0.46 8.91 16 11 C -0.13 -4.77 6.08 30.67 0.19 -4.58 16 12 C -0.10 -3.27 5.35 30.62 0.16 -3.11 16 13 C 0.14 5.35 2.60 45.07 0.12 5.47 16 14 H 0.06 2.73 7.58 -2.38 -0.02 2.72 16 15 N -0.69 -21.74 5.08 -445.52 -2.26 -24.00 16 16 C 0.58 19.82 7.78 86.63 0.67 20.49 16 17 O -0.56 -23.74 13.58 -4.13 -0.06 -23.80 16 18 C 0.01 0.18 6.98 40.50 0.28 0.47 16 19 N -0.49 -9.10 11.01 -188.81 -2.08 -11.18 16 20 C 0.26 2.00 13.04 180.10 2.35 4.34 16 21 N -0.52 -4.80 5.98 -185.90 -1.11 -5.91 16 22 H 0.45 0.55 8.77 -92.71 -0.81 -0.27 16 23 C -0.06 -1.36 6.50 41.59 0.27 -1.09 16 24 C 0.55 13.89 2.81 71.24 0.20 14.09 16 25 F -0.17 -3.21 17.03 44.97 0.77 -2.44 16 26 F -0.17 -5.41 16.18 44.97 0.73 -4.68 16 27 F -0.17 -5.05 16.17 44.97 0.73 -4.32 16 28 C 0.15 6.83 6.09 86.36 0.53 7.36 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 30 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 31 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.42 10.79 8.32 -92.71 -0.77 10.02 16 37 H 0.29 -1.58 8.06 -2.91 -0.02 -1.60 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.03 1.55 7.93 -2.39 -0.02 1.53 16 Total: -1.00 -81.45 338.92 2.89 -78.55 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -0.45 Total: 4.33 kcal Atomic # 6 Polarization: 28.54 SS G_CDS: 6.45 Total: 34.99 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -7.30 Total: -131.86 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 9 Polarization: -13.67 SS G_CDS: 2.22 Total: -11.45 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -81.45 2.89 -78.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007501310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.072 kcal (2) G-P(sol) polarization free energy of solvation -81.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds