Wall clock time and date at job start Sat Apr 11 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00290 * 2 1 4 4 H 1.48503 * 109.46930 * 94.81470 * 3 2 1 5 5 H 1.48493 * 109.47024 * 214.81275 * 3 2 1 6 6 H 1.48497 * 109.46866 * 334.81581 * 3 2 1 7 7 C 1.38812 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99758 * 172.52053 * 7 2 1 9 9 N 1.36938 * 120.00200 * 352.51866 * 7 2 1 10 10 C 1.47060 * 136.05807 * 352.70180 * 9 7 2 11 11 C 1.53239 * 88.08359 * 207.20560 * 10 9 7 12 12 C 1.47068 * 136.05670 * 173.07286 * 9 7 2 13 13 H 1.09003 * 113.46515 * 267.62349 * 12 9 7 14 14 C 1.52998 * 113.46842 * 38.06058 * 12 9 7 15 15 N 1.46498 * 109.47409 * 285.49661 * 14 12 9 16 16 C 1.34772 * 120.00393 * 180.02562 * 15 14 12 17 17 O 1.21572 * 119.99802 * 0.02562 * 16 15 14 18 18 C 1.47710 * 120.00287 * 179.97438 * 16 15 14 19 19 C 1.41502 * 126.51649 * 179.97438 * 18 16 15 20 20 C 1.35369 * 105.50123 * 179.97438 * 19 18 16 21 21 N 1.35038 * 107.22664 * 0.02562 * 20 19 18 22 22 C 1.46496 * 124.88162 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47315 * 124.99942 * 22 21 20 24 24 F 1.39904 * 109.46909 * 59.99775 * 23 22 21 25 25 F 1.39895 * 109.47420 * 180.02562 * 23 22 21 26 26 F 1.39902 * 109.47010 * 299.99927 * 23 22 21 27 27 N 1.28465 * 110.22936 * 359.74690 * 21 20 19 28 28 H 0.96996 * 119.99353 * 359.97438 * 1 2 3 29 29 H 1.09004 * 113.46509 * 321.93498 * 10 9 7 30 30 H 1.08996 * 113.46928 * 92.37327 * 10 9 7 31 31 H 1.09006 * 114.32273 * 220.46714 * 11 10 9 32 32 H 1.08995 * 114.19828 * 87.72724 * 11 10 9 33 33 H 1.09003 * 109.47226 * 45.49639 * 14 12 9 34 34 H 1.09000 * 109.46906 * 165.49542 * 14 12 9 35 35 H 0.97006 * 120.00004 * 359.97438 * 15 14 12 36 36 H 1.07998 * 127.25360 * 359.96021 * 19 18 16 37 37 H 1.07999 * 126.38430 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47392 * 245.00287 * 22 21 20 39 39 H 1.09009 * 109.47456 * 4.99810 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5996 1.9876 1.3952 5 1 3.4933 1.4716 -0.7993 6 1 1.4006 2.6799 -0.5958 7 6 2.0102 -1.2022 0.0005 8 1 3.0834 -1.2062 -0.1212 9 7 1.3343 -2.3830 0.1555 10 6 -0.0467 -2.7792 0.4695 11 6 0.5147 -4.0763 1.0617 12 6 1.6713 -3.8129 0.0875 13 1 1.5157 -4.2491 -0.8992 14 6 3.0466 -4.1431 0.6710 15 7 4.0899 -3.7049 -0.2594 16 6 5.3887 -3.8944 0.0466 17 8 5.6944 -4.4295 1.0945 18 6 6.4406 -3.4531 -0.8918 19 6 7.8381 -3.5819 -0.7112 20 6 8.3974 -3.0425 -1.8196 21 7 7.3885 -2.6182 -2.6106 22 6 7.5608 -1.9711 -3.9136 23 6 6.7695 -2.7400 -4.9735 24 9 5.4131 -2.7446 -4.6308 25 9 6.9345 -2.1225 -6.2179 26 9 7.2379 -4.0566 -5.0411 27 7 6.2558 -2.8688 -2.0587 28 1 -0.4849 0.8401 0.0004 29 1 -0.5248 -2.1373 1.2094 30 1 -0.6646 -2.9373 -0.4144 31 1 -0.0710 -4.9660 0.8300 32 1 0.7911 -4.0043 2.1135 33 1 3.1701 -3.6286 1.6239 34 1 3.1266 -5.2191 0.8260 35 1 3.8459 -3.2790 -1.0961 36 1 8.3507 -4.0185 0.1333 37 1 9.4536 -2.9658 -2.0318 38 1 7.1960 -0.9453 -3.8609 39 1 8.6176 -1.9675 -4.1806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038379021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:31 Heat of formation + Delta-G solvation = -67.569638 kcal Electronic energy + Delta-G solvation = -28890.547765 eV Core-core repulsion = 24228.504298 eV Total energy + Delta-G solvation = -4662.043468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.22195 -48.76633 -48.69430 -43.73378 -40.68904 -39.64297 -35.55979 -35.20168 -34.25825 -31.86627 -30.59691 -29.93544 -28.99874 -25.68085 -25.40404 -24.06281 -23.01029 -22.60236 -21.31737 -20.80638 -19.82007 -19.66154 -19.13068 -18.92614 -18.24631 -17.45564 -17.13061 -17.01198 -16.61120 -16.08406 -15.68861 -15.62676 -15.57306 -15.49459 -15.12657 -14.92697 -14.84924 -14.82468 -14.76962 -14.65076 -14.10163 -13.83535 -13.59337 -13.33099 -13.16079 -13.03708 -12.71677 -12.63817 -12.30649 -11.96345 -11.90547 -11.66547 -11.41085 -10.94058 -10.82096 -10.46704 -10.18949 -9.98386 -8.90423 -7.90777 -5.20422 0.38240 1.02595 1.12822 1.39866 1.43005 1.49875 1.61475 2.18825 2.35805 2.46262 2.56185 2.83653 3.04803 3.32470 3.37289 3.46174 3.78056 3.88838 3.93121 3.99839 4.09043 4.24241 4.33769 4.62668 4.67531 4.69355 4.73385 4.88487 5.05398 5.09031 5.24254 5.29965 5.42060 5.54736 5.69264 5.72808 5.94101 6.40705 6.77099 6.93250 7.13361 7.62367 8.63390 9.28284 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.010534 B = 0.004029 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.420543 B = 6948.558643 C = 7928.253098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.290 1.290 5 H -0.271 1.271 6 H -0.293 1.293 7 C -0.207 4.207 8 H 0.080 0.920 9 N -0.628 5.628 10 C 0.151 3.849 11 C -0.130 4.130 12 C 0.129 3.871 13 H 0.060 0.940 14 C 0.129 3.871 15 N -0.701 5.701 16 C 0.594 3.406 17 O -0.572 6.572 18 C -0.031 4.031 19 C -0.196 4.196 20 C 0.023 3.977 21 N -0.295 5.295 22 C 0.082 3.918 23 C 0.440 3.560 24 F -0.186 7.186 25 F -0.171 7.171 26 F -0.186 7.186 27 N -0.280 5.280 28 H 0.246 0.754 29 H 0.027 0.973 30 H 0.021 0.979 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.408 0.592 36 H 0.173 0.827 37 H 0.245 0.755 38 H 0.155 0.845 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.185 -6.981 -10.139 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.217 1.217 5 H -0.196 1.196 6 H -0.220 1.220 7 C -0.335 4.335 8 H 0.097 0.903 9 N -0.354 5.354 10 C 0.026 3.974 11 C -0.168 4.168 12 C 0.022 3.978 13 H 0.078 0.922 14 C 0.005 3.995 15 N -0.350 5.350 16 C 0.379 3.621 17 O -0.451 6.451 18 C -0.191 4.191 19 C -0.224 4.224 20 C -0.118 4.118 21 N -0.084 5.084 22 C -0.039 4.039 23 C 0.385 3.615 24 F -0.167 7.167 25 F -0.152 7.152 26 F -0.168 7.168 27 N -0.116 5.116 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.243 0.757 36 H 0.191 0.809 37 H 0.261 0.739 38 H 0.173 0.827 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 19.577 -6.594 -10.291 23.079 hybrid contribution 0.041 0.978 -0.151 0.991 sum 19.618 -5.615 -10.443 22.923 Atomic orbital electron populations 1.70021 1.06258 1.25375 1.58556 1.25534 0.96400 1.00535 1.03630 0.85256 0.77689 0.79965 0.77475 1.21685 1.19623 1.21993 1.19136 0.90651 0.82839 1.40912 0.90268 1.46084 1.07416 0.99974 1.81878 1.21867 0.87730 0.92090 0.95731 1.23426 0.96496 0.98000 0.98916 1.22568 0.92679 0.85104 0.97437 0.92231 1.21710 0.86112 0.99459 0.92227 1.45904 1.05258 1.60176 1.23659 1.17279 0.81993 0.78144 0.84650 1.90721 1.82807 1.45810 1.25784 1.22011 0.95726 1.07079 0.94321 1.22094 0.90961 1.07226 1.02072 1.23673 0.97178 1.00238 0.90726 1.45339 1.03539 1.43397 1.16146 1.23598 1.07164 0.98013 0.75160 1.20891 0.79139 0.78515 0.82923 1.93295 1.35148 1.96333 1.91970 1.93238 1.95268 1.82344 1.44369 1.93218 1.88198 1.38792 1.96577 1.73685 1.10889 1.17420 1.09572 0.94464 0.95482 0.96103 0.88029 0.89583 0.93123 0.89712 0.75737 0.80922 0.73878 0.82718 0.77678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.62 11.88 21.65 0.26 -58.37 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.97 47.04 29.56 68.60 2.03 49.07 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 7 C -0.21 -11.61 10.54 84.03 0.89 -10.73 16 8 H 0.08 4.36 7.62 -2.91 -0.02 4.34 16 9 N -0.63 -31.77 3.63 -714.48 -2.60 -34.37 16 10 C 0.15 7.14 7.19 83.09 0.60 7.74 16 11 C -0.13 -4.57 8.02 30.84 0.25 -4.32 16 12 C 0.13 5.04 4.11 41.78 0.17 5.22 16 13 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 14 C 0.13 4.83 5.52 86.38 0.48 5.31 16 15 N -0.70 -26.75 5.33 -466.11 -2.48 -29.23 16 16 C 0.59 22.50 7.82 86.75 0.68 23.18 16 17 O -0.57 -24.06 16.93 -3.94 -0.07 -24.12 16 18 C -0.03 -0.98 7.13 42.46 0.30 -0.67 16 19 C -0.20 -4.49 10.81 22.41 0.24 -4.25 16 20 C 0.02 0.31 11.40 83.54 0.95 1.27 16 21 N -0.30 -5.42 3.33 -347.94 -1.16 -6.58 16 22 C 0.08 0.75 6.42 86.38 0.55 1.31 16 23 C 0.44 7.33 3.25 71.98 0.23 7.56 16 24 F -0.19 -4.85 16.21 44.97 0.73 -4.12 16 25 F -0.17 -2.59 17.32 44.97 0.78 -1.81 16 26 F -0.19 -3.54 17.24 44.97 0.78 -2.76 16 27 N -0.28 -8.14 10.46 -48.18 -0.50 -8.65 16 28 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.03 1.42 7.66 -2.38 -0.02 1.40 16 30 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 2.79 8.14 -2.38 -0.02 2.77 16 32 H 0.09 2.95 8.12 -2.39 -0.02 2.93 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.41 16.05 8.20 -92.70 -0.76 15.29 16 36 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.25 0.30 8.06 -2.91 -0.02 0.27 16 38 H 0.16 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.21 -0.58 8.04 -2.38 -0.02 -0.60 16 Total: -1.00 -82.22 353.81 3.91 -78.31 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.35 Total: 14.50 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 5.81 Total: 28.13 kcal Atomic # 7 Polarization: -130.71 SS G_CDS: -6.49 Total: -137.19 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.07 Total: -24.12 kcal Atomic # 9 Polarization: -10.98 SS G_CDS: 2.28 Total: -8.69 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -82.22 3.91 -78.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038379021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.741 kcal (2) G-P(sol) polarization free energy of solvation -82.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds