Wall clock time and date at job start Sat Apr 11 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28445 * 125.18897 * 2 1 4 4 C 1.30864 * 110.92071 * 179.73612 * 3 2 1 5 5 C 1.39669 * 107.86609 * 0.45708 * 4 3 2 6 6 C 1.50703 * 127.32150 * 179.83271 * 5 4 3 7 7 F 1.39896 * 109.46921 * 359.67531 * 6 5 4 8 8 F 1.39897 * 109.46747 * 239.67600 * 6 5 4 9 9 F 1.39900 * 109.47175 * 119.67780 * 6 5 4 10 10 C 1.36590 * 125.18722 * 180.02562 * 2 1 3 11 11 C 1.47163 * 126.88604 * 0.02562 * 10 2 1 12 12 O 1.21623 * 120.00303 * 92.83852 * 11 10 2 13 13 N 1.34778 * 119.99893 * 272.83474 * 11 10 2 14 14 C 1.46503 * 120.00150 * 185.29188 * 13 11 10 15 15 C 1.52998 * 109.47181 * 179.97438 * 14 13 11 16 16 C 1.53942 * 113.74280 * 273.73962 * 15 14 13 17 17 N 1.47807 * 86.03777 * 222.08712 * 16 15 14 18 18 C 1.36946 * 134.45544 * 204.64714 * 17 16 15 19 19 H 1.08004 * 119.99555 * 179.86451 * 18 17 16 20 20 C 1.38806 * 120.00164 * 359.86483 * 18 17 16 21 21 N 1.31622 * 119.99997 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00132 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46807 * 90.00022 * 22 20 18 24 24 H 1.48500 * 109.47063 * 209.99825 * 22 20 18 25 25 H 1.48492 * 109.46979 * 329.99941 * 22 20 18 26 26 C 1.47578 * 91.05375 * 24.54869 * 17 16 15 27 27 H 1.09001 * 109.46780 * 274.73271 * 1 2 3 28 28 H 1.09001 * 109.46919 * 34.72177 * 1 2 3 29 29 H 1.08996 * 109.47394 * 154.72682 * 1 2 3 30 30 H 1.08001 * 126.06310 * 180.30370 * 4 3 2 31 31 H 0.96998 * 120.00236 * 5.28677 * 13 11 10 32 32 H 1.08994 * 109.47106 * 300.00471 * 14 13 11 33 33 H 1.09009 * 109.46952 * 59.99790 * 14 13 11 34 34 H 1.08993 * 112.94592 * 45.33349 * 15 14 13 35 35 H 1.09005 * 113.77350 * 336.35130 * 16 15 14 36 36 H 1.09005 * 113.77143 * 107.74330 * 16 15 14 37 37 H 0.97002 * 120.00051 * 180.02562 * 21 20 18 38 38 H 1.08996 * 113.77441 * 221.15590 * 26 17 16 39 39 H 1.09004 * 113.76417 * 89.75164 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7272 0.0056 5 6 3.5612 -0.6667 -0.0009 6 6 4.8147 -1.5034 -0.0015 7 9 5.9347 -0.6652 -0.0017 8 9 4.8359 -2.3105 -1.1439 9 9 4.8368 -2.3110 1.1406 10 6 2.2521 -1.1163 -0.0005 11 6 1.7992 -2.5165 -0.0017 12 8 1.6620 -3.1105 -1.0541 13 7 1.5364 -3.1407 1.1636 14 6 1.1980 -4.5661 1.1710 15 6 0.9484 -5.0235 2.6095 16 6 2.2266 -5.4464 3.3560 17 7 1.4249 -6.5719 3.8807 18 6 1.4997 -7.3657 4.9940 19 1 0.7669 -8.1431 5.1531 20 6 2.5171 -7.1714 5.9180 21 7 3.4104 -6.2243 5.7238 22 14 2.6187 -8.2538 7.4371 23 1 3.4533 -9.4457 7.1405 24 1 3.2300 -7.4863 8.5517 25 1 1.2536 -8.6897 7.8264 26 6 0.5105 -6.4949 2.7249 27 1 -0.3633 0.0848 1.0242 28 1 -0.3633 0.8447 -0.5854 29 1 -0.3634 -0.9292 -0.4387 30 1 4.3048 1.4166 0.0116 31 1 1.5714 -2.6463 1.9974 32 1 0.2992 -4.7292 0.5764 33 1 2.0233 -5.1377 0.7463 34 1 0.3199 -4.3332 3.1720 35 1 3.0385 -5.7549 2.6973 36 1 2.5439 -4.7373 4.1207 37 1 4.1216 -6.0887 6.3693 38 1 -0.5400 -6.6213 2.9865 39 1 0.8171 -7.1120 1.8803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032162995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:48 Heat of formation + Delta-G solvation = -44.386552 kcal Electronic energy + Delta-G solvation = -28977.814419 eV Core-core repulsion = 24316.776245 eV Total energy + Delta-G solvation = -4661.038174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.09959 -47.65808 -47.55402 -43.09373 -39.69409 -38.03987 -34.68854 -34.20636 -32.36443 -31.88031 -29.10641 -28.14034 -26.29388 -25.72514 -24.85237 -23.25998 -21.86693 -21.83548 -20.55279 -19.40619 -18.53178 -18.45397 -18.24292 -17.37496 -16.89125 -16.72223 -16.02236 -15.97697 -15.26974 -14.88776 -14.76056 -14.44928 -14.40384 -14.01860 -13.93936 -13.80261 -13.72776 -13.70972 -13.48544 -13.36463 -13.33875 -12.99055 -12.49723 -12.38515 -11.50664 -11.39344 -11.32677 -11.05438 -10.78552 -10.71891 -10.42920 -9.90725 -9.86888 -9.76521 -9.70626 -9.50063 -9.12183 -8.82911 -6.91790 -5.79494 -3.12327 0.95322 1.58885 1.97223 2.25161 2.68212 2.93564 3.37616 3.42382 3.44465 3.62964 3.81069 4.17063 4.30590 4.40481 4.42348 4.60896 4.63383 4.90158 4.92020 5.04674 5.10816 5.17915 5.28041 5.56902 5.70820 5.73289 5.84820 6.09401 6.11263 6.20187 6.35811 6.55121 6.63157 7.18107 7.21982 7.29542 7.43468 7.51504 7.82627 7.94886 9.01620 9.68021 10.55744 11.37510 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.015094 B = 0.003179 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.583659 B = 8804.876011 C = 9619.763991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.262 5.262 3 N -0.277 5.277 4 C 0.060 3.940 5 C -0.268 4.268 6 C 0.543 3.457 7 F -0.174 7.174 8 F -0.171 7.171 9 F -0.167 7.167 10 C 0.046 3.954 11 C 0.575 3.425 12 O -0.510 6.510 13 N -0.698 5.698 14 C 0.128 3.872 15 C -0.155 4.155 16 C 0.168 3.832 17 N -0.612 5.612 18 C -0.226 4.226 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.130 3.870 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.200 0.800 31 H 0.407 0.593 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.254 0.746 38 H 0.046 0.954 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 15.941 -12.586 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.047 5.047 3 N -0.106 5.106 4 C -0.118 4.118 5 C -0.281 4.281 6 C 0.487 3.513 7 F -0.155 7.155 8 F -0.153 7.153 9 F -0.149 7.149 10 C -0.087 4.087 11 C 0.356 3.644 12 O -0.384 6.384 13 N -0.349 5.349 14 C 0.005 3.995 15 C -0.174 4.174 16 C 0.043 3.957 17 N -0.338 5.338 18 C -0.353 4.353 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.003 3.997 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.217 0.783 31 H 0.242 0.758 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.797 16.268 -13.021 21.382 hybrid contribution 1.034 -1.150 1.191 1.952 sum -3.762 15.118 -11.830 19.562 Atomic orbital electron populations 1.22397 0.71774 1.06171 1.05506 1.45781 1.08105 1.01421 1.49417 1.73304 1.03388 1.12921 1.20987 1.23430 0.94082 0.92360 1.01907 1.20599 0.91496 0.95782 1.20176 1.17138 0.82126 0.77686 0.74309 1.93174 1.54637 1.71415 1.96287 1.93258 1.96667 1.74487 1.50854 1.93295 1.96655 1.74330 1.50582 1.21446 0.90681 0.90100 1.06446 1.16969 0.78771 0.83578 0.85091 1.90899 1.50636 1.65857 1.30974 1.46063 1.68204 1.12360 1.08261 1.21661 1.00960 0.78249 0.98673 1.23850 1.02614 0.98106 0.92875 1.22369 0.90180 0.89582 0.93572 1.45973 1.29951 1.38663 1.19245 1.19021 1.09836 1.10917 0.95548 0.90238 1.24780 0.97344 0.99125 0.99064 1.69808 1.16698 1.33539 1.36692 0.86131 0.77612 0.79649 0.82432 1.21573 1.21601 1.20617 1.22474 0.95084 0.91321 0.90796 0.88551 0.87612 0.88202 0.78284 0.75795 0.91181 0.90687 0.89098 0.95310 0.90879 0.93575 0.93586 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 11.21 59.85 0.67 1.15 16 2 N -0.26 -2.65 3.75 -63.88 -0.24 -2.89 16 3 N -0.28 -2.95 11.90 30.59 0.36 -2.59 16 4 C 0.06 0.62 11.53 -17.43 -0.20 0.42 16 5 C -0.27 -3.29 5.70 -104.02 -0.59 -3.89 16 6 C 0.54 7.23 3.36 36.01 0.12 7.36 16 7 F -0.17 -2.08 16.93 2.25 0.04 -2.04 16 8 F -0.17 -2.54 17.30 2.25 0.04 -2.50 16 9 F -0.17 -2.50 17.30 2.25 0.04 -2.46 16 10 C 0.05 0.57 6.71 -82.06 -0.55 0.02 16 11 C 0.58 7.87 6.83 -12.64 -0.09 7.78 16 12 O -0.51 -8.53 17.12 5.26 0.09 -8.44 16 13 N -0.70 -8.84 5.55 -61.47 -0.34 -9.18 16 14 C 0.13 1.80 5.52 -4.04 -0.02 1.78 16 15 C -0.15 -2.56 3.93 -89.70 -0.35 -2.92 16 16 C 0.17 3.76 7.08 -2.84 -0.02 3.74 16 17 N -0.61 -15.25 3.70 -177.71 -0.66 -15.91 16 18 C -0.23 -6.25 10.70 -15.06 -0.16 -6.41 16 19 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 21 N -0.92 -27.00 11.39 55.49 0.63 -26.37 16 22 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.13 2.48 8.51 -2.97 -0.03 2.46 16 27 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.56 7.66 -51.93 -0.40 0.17 16 30 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.41 4.58 8.46 -40.82 -0.35 4.24 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.18 7.88 -51.92 -0.41 0.77 16 34 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 36 H 0.07 1.81 7.17 -51.93 -0.37 1.43 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -34.17 354.47 -5.47 -39.64 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.44 Total: -0.71 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -1.32 Total: 11.20 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.24 Total: -56.94 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 0.12 Total: -7.00 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.17 -5.47 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032162995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.748 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds