Wall clock time and date at job start Sat Apr 11 2020 03:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 119.99836 * 2 1 3 5 5 C 1.36934 * 120.00548 * 275.00076 * 4 2 1 6 6 H 1.07999 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.38805 * 120.00389 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00298 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00377 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46915 * 59.99480 * 9 7 5 11 11 H 1.48495 * 109.47422 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47142 * 300.00141 * 9 7 5 13 13 C 1.52995 * 109.47187 * 240.00502 * 2 1 3 14 14 H 1.09002 * 109.46830 * 299.99492 * 13 2 1 15 15 C 1.53000 * 109.47187 * 180.02562 * 13 2 1 16 16 N 1.46496 * 109.47630 * 59.99640 * 13 2 1 17 17 C 1.34777 * 120.00258 * 205.00405 * 16 13 2 18 18 O 1.21552 * 120.00341 * 359.97438 * 17 16 13 19 19 C 1.47836 * 119.99800 * 179.97438 * 17 16 13 20 20 C 1.39948 * 120.93999 * 359.72080 * 19 17 16 21 21 N 1.32146 * 118.92157 * 179.76323 * 20 19 17 22 22 C 1.31872 * 120.96687 * 0.52033 * 21 20 19 23 23 C 1.50706 * 118.95337 * 179.74453 * 22 21 20 24 24 F 1.39898 * 109.47064 * 284.98464 * 23 22 21 25 25 F 1.39906 * 109.46376 * 44.98017 * 23 22 21 26 26 F 1.39894 * 109.47310 * 164.97642 * 23 22 21 27 27 N 1.31866 * 122.09911 * 359.72677 * 22 21 20 28 28 C 1.32149 * 120.96517 * 0.02562 * 27 22 21 29 29 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 31 31 H 1.09002 * 109.47254 * 60.00358 * 1 2 3 32 32 H 0.96999 * 119.99694 * 95.00601 * 4 2 1 33 33 H 0.97001 * 120.00669 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47302 * 59.99702 * 15 13 2 35 35 H 1.09006 * 109.47229 * 180.02562 * 15 13 2 36 36 H 1.09002 * 109.46821 * 299.99498 * 15 13 2 37 37 H 0.96999 * 119.99694 * 24.99795 * 16 13 2 38 38 H 1.07995 * 120.54067 * 359.97438 * 20 19 17 39 39 H 1.07995 * 120.54396 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0403 2.4244 7 6 2.6123 -0.6617 3.5089 8 7 2.9263 -1.9386 3.4497 9 14 2.7901 0.2699 5.1183 10 1 1.4673 0.8057 5.5288 11 1 3.2991 -0.6485 6.1683 12 1 3.7444 1.3931 4.9372 13 6 2.0400 -0.7211 -1.2493 14 1 1.6767 -1.7488 -1.2493 15 6 3.5700 -0.7217 -1.2489 16 7 1.5517 -0.0306 -2.4454 17 6 1.4229 -0.7029 -3.6064 18 8 1.7124 -1.8822 -3.6612 19 6 0.9296 -0.0061 -4.8133 20 6 0.5851 1.3497 -4.7711 21 7 0.1530 1.9340 -5.8748 22 6 0.0351 1.2562 -6.9998 23 6 -0.4679 1.9664 -8.2301 24 9 -1.8481 2.1672 -8.1212 25 9 0.1752 3.2031 -8.3501 26 9 -0.1975 1.1886 -9.3610 27 7 0.3435 -0.0232 -7.0827 28 6 0.7880 -0.6852 -6.0288 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6317 1.1525 33 1 3.2497 -2.3959 4.2416 34 1 3.9330 -1.2358 -0.3590 35 1 3.9334 -1.2351 -2.1392 36 1 3.9337 0.3059 -1.2487 37 1 1.3209 0.9106 -2.4018 38 1 0.6743 1.9102 -3.8523 39 1 1.0390 -1.7328 -6.1045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674680607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:02:35 Heat of formation + Delta-G solvation = -138.988470 kcal Electronic energy + Delta-G solvation = -27819.246889 eV Core-core repulsion = 23154.106469 eV Total energy + Delta-G solvation = -4665.140421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -51.37694 -48.89996 -48.85901 -42.73753 -40.84673 -38.31746 -35.85749 -35.30930 -34.45814 -33.37267 -31.08732 -30.11918 -28.86265 -26.14538 -25.88715 -25.30253 -24.11539 -22.06190 -21.63003 -20.31625 -20.02037 -19.80825 -19.48187 -19.05934 -18.50455 -17.13846 -16.74479 -16.59330 -16.46550 -16.02943 -15.77004 -15.63308 -15.48141 -15.35130 -15.26501 -15.03330 -14.98980 -14.96811 -14.84618 -14.66432 -14.06344 -14.04786 -13.47339 -13.19445 -13.04491 -12.90348 -12.69122 -12.56300 -12.43588 -12.24780 -12.19326 -11.72492 -11.47049 -11.29532 -11.23657 -10.94833 -10.88251 -10.22900 -8.98592 -7.89784 -5.18132 -1.28160 -0.41667 0.89217 1.40518 1.51351 1.52875 1.58747 1.77828 2.12503 2.23976 2.24533 2.60643 2.97725 3.07667 3.18295 3.26291 3.34511 3.44816 3.54501 3.81823 4.04856 4.21195 4.38081 4.38696 4.63111 4.67909 4.78341 4.89738 4.97853 5.06340 5.15661 5.25998 5.36499 5.46592 5.55766 5.59458 6.22318 6.31228 6.35586 6.98785 7.38252 8.12423 8.34001 9.33312 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.029145 B = 0.002148 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.477165 B =13034.561780 C =13521.872425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.066 0.934 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.081 0.919 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.303 1.303 12 H -0.277 1.277 13 C 0.151 3.849 14 H 0.068 0.932 15 C -0.146 4.146 16 N -0.691 5.691 17 C 0.572 3.428 18 O -0.557 6.557 19 C -0.201 4.201 20 C 0.201 3.799 21 N -0.488 5.488 22 C 0.245 3.755 23 C 0.550 3.450 24 F -0.162 7.162 25 F -0.158 7.158 26 F -0.155 7.155 27 N -0.491 5.491 28 C 0.212 3.788 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.372 0.628 33 H 0.249 0.751 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.416 0.584 38 H 0.225 0.775 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.192 9.569 -23.316 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.084 0.916 4 N -0.371 5.371 5 C -0.362 4.362 6 H 0.099 0.901 7 C -0.268 4.268 8 N -0.620 5.620 9 Si 0.797 3.203 10 H -0.206 1.206 11 H -0.229 1.229 12 H -0.203 1.203 13 C 0.046 3.954 14 H 0.086 0.914 15 C -0.205 4.205 16 N -0.343 5.343 17 C 0.357 3.643 18 O -0.435 6.435 19 C -0.209 4.209 20 C 0.035 3.965 21 N -0.201 5.201 22 C -0.026 4.026 23 C 0.494 3.506 24 F -0.143 7.143 25 F -0.139 7.139 26 F -0.136 7.136 27 N -0.204 5.204 28 C 0.047 3.953 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.204 0.796 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.254 0.746 38 H 0.241 0.759 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.323 9.384 -24.055 26.584 hybrid contribution 0.392 -0.281 1.762 1.827 sum -5.931 9.103 -22.293 24.800 Atomic orbital electron populations 1.22345 0.97484 1.00688 1.01256 1.20597 0.92951 0.95849 0.84870 0.91582 1.42457 1.78451 1.10270 1.05883 1.19530 1.34532 0.94275 0.87879 0.90093 1.25486 1.03239 0.96767 1.01298 1.69805 1.52675 1.10224 1.29335 0.85301 0.77863 0.77319 0.79795 1.20617 1.22926 1.20325 1.21003 0.94296 0.96676 0.83446 0.91356 1.21957 0.94766 1.02466 1.01269 1.45702 1.65534 1.14664 1.08380 1.17746 0.77779 0.86041 0.82780 1.90844 1.51096 1.16622 1.84965 1.21915 1.04685 0.97426 0.96840 1.24170 0.85161 0.90287 0.96856 1.68103 1.13784 1.39246 0.98967 1.22949 0.96725 0.89326 0.93624 1.17040 0.75745 0.76691 0.81169 1.93273 1.30066 1.94964 1.96004 1.93277 1.81358 1.43169 1.96068 1.93275 1.93461 1.74601 1.52285 1.68201 1.11725 1.07697 1.32793 1.23862 0.85139 1.01437 0.84861 0.94833 0.93956 0.90447 0.79579 0.94257 0.92909 0.92912 0.91473 0.74562 0.75922 0.77577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 9.33 71.98 0.67 -3.90 16 2 C 0.17 5.32 2.52 44.99 0.11 5.43 16 3 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 4 N -0.73 -32.81 4.43 -322.96 -1.43 -34.24 16 5 C -0.23 -11.64 9.93 84.03 0.83 -10.81 16 6 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 7 C -0.08 -4.11 5.50 84.86 0.47 -3.64 16 8 N -0.97 -57.14 13.06 21.65 0.28 -56.85 16 9 Si 0.97 44.03 29.55 68.60 2.03 46.06 16 10 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 12 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.15 4.20 2.20 44.99 0.10 4.30 16 14 H 0.07 2.26 7.58 -2.39 -0.02 2.24 16 15 C -0.15 -4.30 9.33 71.98 0.67 -3.63 16 16 N -0.69 -12.83 4.34 -445.43 -1.93 -14.77 16 17 C 0.57 11.66 7.75 86.78 0.67 12.33 16 18 O -0.56 -15.91 16.11 -3.88 -0.06 -15.98 16 19 C -0.20 -3.06 5.91 -19.91 -0.12 -3.18 16 20 C 0.20 2.37 10.81 85.06 0.92 3.29 16 21 N -0.49 -7.91 10.19 -186.80 -1.90 -9.82 16 22 C 0.24 4.46 7.09 138.71 0.98 5.45 16 23 C 0.55 9.65 3.49 71.24 0.25 9.90 16 24 F -0.16 -2.87 17.30 44.97 0.78 -2.10 16 25 F -0.16 -2.76 17.19 44.97 0.77 -1.98 16 26 F -0.16 -2.81 16.86 44.97 0.76 -2.05 16 27 N -0.49 -9.06 9.81 -186.79 -1.83 -10.89 16 28 C 0.21 3.45 10.88 85.06 0.93 4.38 16 29 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.56 7.45 -2.39 -0.02 1.54 16 32 H 0.37 18.66 7.58 -92.71 -0.70 17.96 16 33 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.05 1.90 7.44 -2.39 -0.02 1.89 16 35 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.42 4.60 6.52 -92.71 -0.60 4.00 16 38 H 0.22 0.80 6.54 -2.91 -0.02 0.78 16 39 H 0.21 2.85 7.74 -2.91 -0.02 2.83 16 Total: -1.00 -66.67 352.55 3.77 -62.89 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -0.17 Total: 19.81 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 6.49 Total: 19.91 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -6.82 Total: -126.57 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.06 Total: -15.98 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 2.31 Total: -6.13 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -66.67 3.77 -62.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674680607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.096 kcal (2) G-P(sol) polarization free energy of solvation -66.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds