Wall clock time and date at job start Sat Apr 11 2020 03:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28470 * 124.87925 * 2 1 4 4 C 1.31817 * 110.06709 * 180.02562 * 3 2 1 5 5 C 1.47711 * 126.51320 * 180.02562 * 4 3 2 6 6 O 1.21570 * 119.99784 * 173.48965 * 5 4 3 7 7 N 1.34781 * 120.00110 * 353.48057 * 5 4 3 8 8 C 1.46971 * 120.59198 * 184.49379 * 7 5 4 9 9 C 1.53814 * 108.39699 * 124.76207 * 8 7 5 10 10 N 1.46962 * 108.57683 * 49.63668 * 9 8 7 11 11 C 1.36939 * 120.59547 * 124.67074 * 10 9 8 12 12 H 1.07999 * 119.99677 * 327.50851 * 11 10 9 13 13 C 1.38808 * 120.00111 * 147.50074 * 11 10 9 14 14 N 1.31618 * 119.99705 * 165.75371 * 13 11 10 15 15 Si 1.86795 * 120.00480 * 345.75926 * 13 11 10 16 16 H 1.48501 * 109.47282 * 91.18129 * 15 13 11 17 17 H 1.48498 * 109.47650 * 211.18514 * 15 13 11 18 18 H 1.48508 * 109.46901 * 331.18792 * 15 13 11 19 19 C 1.46966 * 118.81180 * 304.64530 * 10 9 8 20 20 C 1.46962 * 120.59311 * 4.77994 * 7 5 4 21 21 C 1.41497 * 106.96724 * 359.77079 * 4 3 2 22 22 C 1.35037 * 124.88800 * 180.02562 * 2 1 3 23 23 C 1.50696 * 126.38257 * 359.96214 * 22 2 1 24 24 F 1.39906 * 109.47239 * 89.99790 * 23 22 2 25 25 F 1.39903 * 109.47236 * 329.99998 * 23 22 2 26 26 F 1.39898 * 109.47243 * 209.99798 * 23 22 2 27 27 H 1.08999 * 109.47196 * 269.97335 * 1 2 3 28 28 H 1.09003 * 109.47413 * 29.97899 * 1 2 3 29 29 H 1.09001 * 109.46779 * 149.97514 * 1 2 3 30 30 H 1.08995 * 109.60662 * 244.54437 * 8 7 5 31 31 H 1.08998 * 109.60578 * 5.05391 * 8 7 5 32 32 H 1.09006 * 109.73928 * 289.85152 * 9 8 7 33 33 H 1.08993 * 109.53295 * 169.30418 * 9 8 7 34 34 H 0.97002 * 120.00304 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.61343 * 295.48228 * 19 10 9 36 36 H 1.09002 * 109.60627 * 174.97730 * 19 10 9 37 37 H 1.08998 * 109.60871 * 354.94085 * 20 7 5 38 38 H 1.08997 * 109.60779 * 115.45716 * 20 7 5 39 39 H 1.07996 * 127.25065 * 180.24839 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4740 0.7169 -0.0006 5 6 4.6272 1.6400 -0.0002 6 8 5.7555 1.2030 0.1186 7 7 4.4286 2.9666 -0.1318 8 6 5.5698 3.8874 -0.2319 9 6 5.4141 4.7152 -1.5188 10 7 4.0527 5.2674 -1.5585 11 6 3.8509 6.6153 -1.6921 12 1 4.5575 7.3119 -1.2657 13 6 2.7383 7.0861 -2.3756 14 7 2.3879 8.3504 -2.2707 15 14 1.7384 5.9254 -3.4444 16 1 0.6473 5.3244 -2.6360 17 1 1.1536 6.6799 -4.5820 18 1 2.6193 4.8491 -3.9648 19 6 2.9117 4.3472 -1.4528 20 6 3.0673 3.5188 -0.1714 21 6 3.5272 -0.6970 0.0045 22 6 2.2374 -1.1077 -0.0005 23 6 1.7535 -2.5348 -0.0003 24 9 1.6030 -2.9764 -1.3193 25 9 0.5223 -2.6098 0.6598 26 9 2.6859 -3.3433 0.6585 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 5.5819 4.5501 0.6334 31 1 6.4977 3.3169 -0.2720 32 1 5.5758 4.0780 -2.3883 33 1 6.1391 5.5290 -1.5186 34 1 1.6102 8.6795 -2.7480 35 1 2.8953 3.6838 -2.3175 36 1 1.9842 4.9180 -1.4090 37 1 2.3423 2.7049 -0.1717 38 1 2.9055 4.1559 0.6980 39 1 4.4109 -1.3179 0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681663270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:03 Heat of formation + Delta-G solvation = -44.551861 kcal Electronic energy + Delta-G solvation = -29441.552670 eV Core-core repulsion = 24780.507328 eV Total energy + Delta-G solvation = -4661.045342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -50.70070 -48.24844 -48.14803 -43.24302 -39.57629 -37.08269 -34.23997 -33.82188 -32.43141 -31.49149 -30.71427 -28.23541 -27.13871 -26.37738 -24.18806 -23.26181 -22.73314 -21.74733 -20.80350 -19.58765 -19.08567 -18.78136 -18.26915 -17.17614 -16.74836 -16.58321 -15.81073 -15.69958 -15.15494 -15.08734 -14.98520 -14.72244 -14.62887 -14.42454 -14.30767 -14.27171 -14.20345 -13.84140 -13.67297 -13.32263 -13.02226 -12.85043 -12.77510 -12.56212 -12.26543 -12.03550 -11.47668 -11.08521 -10.58674 -10.38582 -10.22813 -10.15977 -9.99114 -9.65989 -9.55790 -9.53792 -8.86782 -8.35867 -6.93578 -6.00899 -3.44714 1.01010 1.49534 1.62845 2.12969 3.00520 3.21445 3.23216 3.36320 3.41441 3.44278 3.46429 3.82031 3.91004 4.44700 4.48743 4.63028 4.77065 4.90051 4.92199 4.96745 5.16531 5.28621 5.56461 5.62727 5.77661 5.79326 5.87912 5.99982 6.05543 6.13458 6.39978 6.47128 6.53048 6.70163 6.89729 7.35290 7.67376 7.92486 8.27129 8.28954 8.85525 9.63275 10.02061 11.14974 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.003602 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.632100 B = 7770.560596 C = 8845.301648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.256 5.256 3 N -0.218 5.218 4 C -0.001 4.001 5 C 0.595 3.405 6 O -0.542 6.542 7 N -0.581 5.581 8 C 0.094 3.906 9 C 0.135 3.865 10 N -0.607 5.607 11 C -0.263 4.263 12 H 0.087 0.913 13 C 0.026 3.974 14 N -0.910 5.910 15 Si 0.888 3.112 16 H -0.287 1.287 17 H -0.302 1.302 18 H -0.270 1.270 19 C 0.115 3.885 20 C 0.059 3.941 21 C -0.105 4.105 22 C -0.096 4.096 23 C 0.550 3.450 24 F -0.167 7.167 25 F -0.175 7.175 26 F -0.159 7.159 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.264 0.736 35 H 0.029 0.971 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.070 0.930 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 -22.094 5.827 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.044 5.044 3 N -0.055 5.055 4 C -0.158 4.158 5 C 0.380 3.620 6 O -0.419 6.419 7 N -0.312 5.312 8 C -0.029 4.029 9 C 0.009 3.991 10 N -0.331 5.331 11 C -0.391 4.391 12 H 0.104 0.896 13 C -0.173 4.173 14 N -0.553 5.553 15 Si 0.719 3.281 16 H -0.215 1.215 17 H -0.231 1.231 18 H -0.195 1.195 19 C -0.012 4.012 20 C -0.066 4.066 21 C -0.134 4.134 22 C -0.221 4.221 23 C 0.494 3.506 24 F -0.148 7.148 25 F -0.156 7.156 26 F -0.140 7.140 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.132 -21.266 5.824 22.638 hybrid contribution -0.505 -1.301 -0.653 1.541 sum -5.637 -22.567 5.171 23.829 Atomic orbital electron populations 1.22538 0.72062 1.06427 1.05663 1.45673 1.08296 1.01513 1.48921 1.73583 1.03416 1.10821 1.17650 1.22147 0.90836 0.93645 1.09210 1.16863 0.86076 0.81426 0.77587 1.90768 1.22545 1.76704 1.51867 1.47888 1.09135 1.04960 1.69199 1.22434 0.88309 0.91690 1.00492 1.21423 0.88163 0.96050 0.93505 1.44308 0.99458 1.03780 1.85593 1.18940 1.10270 0.80239 1.29663 0.89578 1.25393 0.98549 0.95407 0.97938 1.69772 1.27055 1.14195 1.44276 0.86885 0.79836 0.80639 0.80756 1.21521 1.23055 1.19520 1.21739 0.92827 0.92450 0.94158 1.23313 0.82740 1.00045 1.00517 1.21585 0.95576 0.94096 1.02136 1.21064 0.93214 0.88577 1.19259 1.17015 0.74978 0.84298 0.74287 1.93281 1.95407 1.90601 1.35520 1.93213 1.44391 1.96797 1.81183 1.93257 1.65360 1.74556 1.80874 0.88411 0.87177 0.88342 0.91071 0.89377 0.95313 0.90369 0.92655 0.95308 0.90099 0.85820 0.91123 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.24 59.85 0.61 1.07 16 2 N -0.26 -2.74 3.70 -63.85 -0.24 -2.98 16 3 N -0.22 -2.97 8.31 33.42 0.28 -2.70 16 4 C 0.00 -0.01 6.90 -82.76 -0.57 -0.58 16 5 C 0.60 10.33 7.70 -12.39 -0.10 10.23 16 6 O -0.54 -10.31 16.35 5.30 0.09 -10.22 16 7 N -0.58 -10.37 2.94 -173.38 -0.51 -10.88 16 8 C 0.09 1.65 6.61 -3.36 -0.02 1.62 16 9 C 0.14 2.67 6.69 -3.37 -0.02 2.64 16 10 N -0.61 -14.19 2.70 -171.77 -0.46 -14.66 16 11 C -0.26 -7.17 10.03 -15.06 -0.15 -7.32 16 12 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 13 C 0.03 0.75 5.32 -17.43 -0.09 0.65 16 14 N -0.91 -27.35 13.97 55.49 0.78 -26.57 16 15 Si 0.89 21.94 24.32 -169.99 -4.13 17.80 16 16 H -0.29 -6.71 6.64 56.52 0.38 -6.33 16 17 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 18 H -0.27 -6.65 6.43 56.52 0.36 -6.29 16 19 C 0.11 2.45 4.32 -3.60 -0.02 2.43 16 20 C 0.06 1.05 6.49 -3.60 -0.02 1.03 16 21 C -0.11 -1.30 10.41 -39.37 -0.41 -1.71 16 22 C -0.10 -1.02 6.38 -82.21 -0.52 -1.54 16 23 C 0.55 4.84 3.30 36.00 0.12 4.96 16 24 F -0.17 -1.53 17.30 2.25 0.04 -1.49 16 25 F -0.17 -1.35 15.12 2.25 0.03 -1.32 16 26 F -0.16 -1.45 17.03 2.25 0.04 -1.41 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.10 0.46 6.89 -51.93 -0.36 0.10 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.45 7.01 -51.93 -0.36 1.09 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 35 H 0.03 0.63 6.95 -51.93 -0.36 0.27 16 36 H 0.08 1.84 4.56 -51.93 -0.24 1.60 16 37 H 0.13 2.01 3.68 -119.96 -0.44 1.57 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.18 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -32.67 328.47 -4.67 -37.34 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -4.33 Total: -1.38 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: -1.20 Total: 13.50 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.16 Total: -57.78 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.11 Total: -4.21 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.13 Total: 17.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.67 -4.67 -37.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681663270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.213 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds