Wall clock time and date at job start Sat Apr 11 2020 03:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28470 * 124.87925 * 2 1 4 4 C 1.31817 * 110.06709 * 180.02562 * 3 2 1 5 5 C 1.47711 * 126.51320 * 180.02562 * 4 3 2 6 6 O 1.21570 * 119.99784 * 173.48965 * 5 4 3 7 7 N 1.34781 * 120.00110 * 353.48057 * 5 4 3 8 8 C 1.46971 * 120.59198 * 184.49379 * 7 5 4 9 9 C 1.53814 * 108.39699 * 124.76207 * 8 7 5 10 10 N 1.46962 * 108.57683 * 49.63668 * 9 8 7 11 11 C 1.36939 * 120.59547 * 124.67074 * 10 9 8 12 12 H 1.07999 * 119.99677 * 327.50851 * 11 10 9 13 13 C 1.38808 * 120.00111 * 147.50074 * 11 10 9 14 14 N 1.31618 * 119.99705 * 165.75371 * 13 11 10 15 15 Si 1.86795 * 120.00480 * 345.75926 * 13 11 10 16 16 H 1.48501 * 109.47282 * 91.18129 * 15 13 11 17 17 H 1.48498 * 109.47650 * 211.18514 * 15 13 11 18 18 H 1.48508 * 109.46901 * 331.18792 * 15 13 11 19 19 C 1.46966 * 118.81180 * 304.64530 * 10 9 8 20 20 C 1.46962 * 120.59311 * 4.77994 * 7 5 4 21 21 C 1.41497 * 106.96724 * 359.77079 * 4 3 2 22 22 C 1.35037 * 124.88800 * 180.02562 * 2 1 3 23 23 C 1.50696 * 126.38257 * 359.96214 * 22 2 1 24 24 F 1.39906 * 109.47239 * 89.99790 * 23 22 2 25 25 F 1.39903 * 109.47236 * 329.99998 * 23 22 2 26 26 F 1.39898 * 109.47243 * 209.99798 * 23 22 2 27 27 H 1.08999 * 109.47196 * 269.97335 * 1 2 3 28 28 H 1.09003 * 109.47413 * 29.97899 * 1 2 3 29 29 H 1.09001 * 109.46779 * 149.97514 * 1 2 3 30 30 H 1.08995 * 109.60662 * 244.54437 * 8 7 5 31 31 H 1.08998 * 109.60578 * 5.05391 * 8 7 5 32 32 H 1.09006 * 109.73928 * 289.85152 * 9 8 7 33 33 H 1.08993 * 109.53295 * 169.30418 * 9 8 7 34 34 H 0.97002 * 120.00304 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.61343 * 295.48228 * 19 10 9 36 36 H 1.09002 * 109.60627 * 174.97730 * 19 10 9 37 37 H 1.08998 * 109.60871 * 354.94085 * 20 7 5 38 38 H 1.08997 * 109.60779 * 115.45716 * 20 7 5 39 39 H 1.07996 * 127.25065 * 180.24839 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4740 0.7169 -0.0006 5 6 4.6272 1.6400 -0.0002 6 8 5.7555 1.2030 0.1186 7 7 4.4286 2.9666 -0.1318 8 6 5.5698 3.8874 -0.2319 9 6 5.4141 4.7152 -1.5188 10 7 4.0527 5.2674 -1.5585 11 6 3.8509 6.6153 -1.6921 12 1 4.5575 7.3119 -1.2657 13 6 2.7383 7.0861 -2.3756 14 7 2.3879 8.3504 -2.2707 15 14 1.7384 5.9254 -3.4444 16 1 0.6473 5.3244 -2.6360 17 1 1.1536 6.6799 -4.5820 18 1 2.6193 4.8491 -3.9648 19 6 2.9117 4.3472 -1.4528 20 6 3.0673 3.5188 -0.1714 21 6 3.5272 -0.6970 0.0045 22 6 2.2374 -1.1077 -0.0005 23 6 1.7535 -2.5348 -0.0003 24 9 1.6030 -2.9764 -1.3193 25 9 0.5223 -2.6098 0.6598 26 9 2.6859 -3.3433 0.6585 27 1 -0.3633 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5142 30 1 5.5819 4.5501 0.6334 31 1 6.4977 3.3169 -0.2720 32 1 5.5758 4.0780 -2.3883 33 1 6.1391 5.5290 -1.5186 34 1 1.6102 8.6795 -2.7480 35 1 2.8953 3.6838 -2.3175 36 1 1.9842 4.9180 -1.4090 37 1 2.3423 2.7049 -0.1717 38 1 2.9055 4.1559 0.6980 39 1 4.4109 -1.3179 0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681663270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:02 Heat of formation + Delta-G solvation = -66.429933 kcal Electronic energy + Delta-G solvation = -29442.501374 eV Core-core repulsion = 24780.507328 eV Total energy + Delta-G solvation = -4661.994046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -51.38539 -48.90982 -48.84702 -44.17908 -40.97237 -38.67582 -35.78322 -34.84485 -33.64536 -33.18595 -32.23234 -29.41258 -28.44482 -27.24741 -25.68023 -24.84165 -24.10561 -22.68000 -22.12841 -20.81914 -19.77982 -19.61801 -19.47209 -18.45989 -18.09166 -17.63172 -17.26697 -17.00498 -16.60502 -16.24802 -15.94547 -15.79747 -15.67591 -15.45826 -15.29471 -15.12880 -15.03329 -14.99805 -14.97861 -14.69623 -14.31035 -14.05264 -13.75502 -13.72800 -13.61721 -13.45738 -13.00790 -12.79865 -12.34225 -12.12746 -11.94000 -11.68497 -11.51079 -11.07132 -10.90192 -10.85606 -10.46183 -9.93687 -8.83239 -8.17909 -5.59037 0.08601 0.43626 0.84358 1.26021 1.35910 1.40269 1.48715 1.88360 2.10842 2.35394 2.38691 2.71389 2.94975 3.11131 3.12388 3.27214 3.53138 3.93525 4.06592 4.08121 4.15622 4.22218 4.24513 4.30601 4.40292 4.52775 4.54861 4.61474 4.66338 4.77390 4.90733 4.97942 5.11702 5.27834 5.53285 5.86262 6.10617 6.23582 6.44911 6.85955 6.94889 7.54900 7.97769 9.01666 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.003602 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.632100 B = 7770.560596 C = 8845.301648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.243 5.243 3 N -0.231 5.231 4 C -0.029 4.029 5 C 0.598 3.402 6 O -0.563 6.563 7 N -0.589 5.589 8 C 0.103 3.897 9 C 0.134 3.866 10 N -0.621 5.621 11 C -0.253 4.253 12 H 0.055 0.945 13 C -0.028 4.028 14 N -0.957 5.957 15 Si 0.949 3.051 16 H -0.263 1.263 17 H -0.310 1.310 18 H -0.268 1.268 19 C 0.112 3.888 20 C 0.072 3.928 21 C -0.111 4.111 22 C -0.088 4.088 23 C 0.562 3.438 24 F -0.166 7.166 25 F -0.164 7.164 26 F -0.159 7.159 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.263 0.737 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.067 0.933 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 -25.069 6.065 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.032 5.032 3 N -0.070 5.070 4 C -0.185 4.185 5 C 0.385 3.615 6 O -0.441 6.441 7 N -0.320 5.320 8 C -0.020 4.020 9 C 0.008 3.992 10 N -0.346 5.346 11 C -0.382 4.382 12 H 0.073 0.927 13 C -0.223 4.223 14 N -0.602 5.602 15 Si 0.778 3.222 16 H -0.189 1.189 17 H -0.239 1.239 18 H -0.193 1.193 19 C -0.013 4.013 20 C -0.053 4.053 21 C -0.140 4.140 22 C -0.214 4.214 23 C 0.506 3.494 24 F -0.147 7.147 25 F -0.145 7.145 26 F -0.141 7.141 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -6.603 -24.289 6.083 25.895 hybrid contribution -0.045 -0.443 -0.669 0.803 sum -6.648 -24.732 5.415 26.176 Atomic orbital electron populations 1.23033 0.69426 1.07987 1.07603 1.46016 1.09630 1.00835 1.46682 1.73279 1.03183 1.12237 1.18271 1.21810 0.90620 0.94143 1.11923 1.17122 0.86634 0.81269 0.76506 1.90745 1.23705 1.76989 1.52694 1.47933 1.08916 1.05409 1.69746 1.22270 0.89019 0.91610 0.99123 1.21527 0.86453 0.96373 0.94822 1.44422 1.01467 1.02756 1.85930 1.18859 1.09164 0.81839 1.28364 0.92727 1.26004 1.00171 0.96787 0.99372 1.69906 1.28207 1.16271 1.45859 0.85895 0.79035 0.78552 0.78768 1.18929 1.23909 1.19322 1.21749 0.91478 0.92138 0.95945 1.23175 0.83563 1.00254 0.98280 1.21736 0.96846 0.93193 1.02202 1.21216 0.92697 0.89464 1.17991 1.16705 0.75209 0.83189 0.74337 1.93290 1.95409 1.90461 1.35582 1.93240 1.43644 1.96678 1.80965 1.93265 1.65519 1.74390 1.80881 0.86255 0.86275 0.86270 0.90881 0.88208 0.95063 0.90200 0.92765 0.95264 0.91423 0.83646 0.91431 0.79567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 10.24 127.77 1.31 1.81 16 2 N -0.24 -4.43 3.70 -355.92 -1.32 -5.75 16 3 N -0.23 -5.73 8.31 -48.17 -0.40 -6.13 16 4 C -0.03 -0.82 6.90 42.45 0.29 -0.53 16 5 C 0.60 20.00 7.70 86.75 0.67 20.67 16 6 O -0.56 -20.86 16.35 -3.94 -0.06 -20.93 16 7 N -0.59 -20.34 2.94 -820.71 -2.41 -22.75 16 8 C 0.10 3.53 6.61 86.56 0.57 4.10 16 9 C 0.13 5.24 6.69 86.57 0.58 5.81 16 10 N -0.62 -28.91 2.70 -697.35 -1.88 -30.79 16 11 C -0.25 -14.05 10.03 84.03 0.84 -13.21 16 12 H 0.06 3.32 8.06 -2.91 -0.02 3.29 16 13 C -0.03 -1.61 5.32 84.86 0.45 -1.15 16 14 N -0.96 -58.87 13.97 21.65 0.30 -58.57 16 15 Si 0.95 45.30 24.32 68.60 1.67 46.97 16 16 H -0.26 -11.43 6.64 99.48 0.66 -10.77 16 17 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 18 H -0.27 -12.59 6.43 99.48 0.64 -11.95 16 19 C 0.11 4.66 4.32 86.41 0.37 5.04 16 20 C 0.07 2.48 6.49 86.42 0.56 3.04 16 21 C -0.11 -2.51 10.41 22.41 0.23 -2.28 16 22 C -0.09 -1.60 6.38 41.40 0.26 -1.34 16 23 C 0.56 8.10 3.30 71.23 0.23 8.33 16 24 F -0.17 -2.52 17.30 44.97 0.78 -1.75 16 25 F -0.16 -1.93 15.12 44.97 0.68 -1.25 16 26 F -0.16 -2.46 17.03 44.97 0.77 -1.69 16 27 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.12 0.60 6.89 -2.39 -0.02 0.58 16 30 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.10 3.20 7.01 -2.39 -0.02 3.18 16 32 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 3.04 7.93 -2.39 -0.02 3.02 16 34 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.03 1.22 6.95 -2.39 -0.02 1.21 16 36 H 0.07 2.98 4.56 -2.39 -0.01 2.97 16 37 H 0.15 4.42 3.68 -90.39 -0.33 4.09 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.19 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -70.60 328.47 5.18 -65.42 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.68 Total: 6.93 kcal Atomic # 6 Polarization: 23.92 SS G_CDS: 6.38 Total: 30.30 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -5.71 Total: -123.99 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 2.22 Total: -4.69 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.97 kcal Total: -70.60 5.18 -65.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681663270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.011 kcal (2) G-P(sol) polarization free energy of solvation -70.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds