Wall clock time and date at job start Sat Apr 11 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00330 * 2 1 4 4 H 1.48505 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47595 * 300.00261 * 3 2 1 6 6 H 1.48501 * 109.46831 * 60.00290 * 3 2 1 7 7 C 1.38819 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99427 * 166.74922 * 7 2 1 9 9 N 1.36933 * 120.00276 * 346.75127 * 7 2 1 10 10 C 1.47154 * 120.97974 * 330.04977 * 9 7 2 11 11 C 1.53296 * 108.38429 * 230.26517 * 10 9 7 12 12 O 1.42958 * 109.22288 * 307.69427 * 11 10 9 13 13 C 1.42963 * 114.16402 * 62.58192 * 12 11 10 14 14 C 1.47143 * 120.98466 * 149.76945 * 9 7 2 15 15 H 1.08992 * 109.68489 * 249.46193 * 14 9 7 16 16 C 1.53008 * 109.68223 * 10.01811 * 14 9 7 17 17 N 1.46505 * 109.46390 * 299.37238 * 16 14 9 18 18 C 1.34778 * 119.99299 * 180.02562 * 17 16 14 19 19 O 1.21562 * 120.00550 * 359.97438 * 18 17 16 20 20 C 1.47719 * 119.99631 * 180.02562 * 18 17 16 21 21 C 1.40114 * 120.35309 * 359.72000 * 20 18 17 22 22 N 1.31266 * 121.15167 * 179.75956 * 21 20 18 23 23 C 1.32716 * 121.80125 * 0.51586 * 22 21 20 24 24 N 1.37109 * 133.41013 * 179.77461 * 23 22 21 25 25 H 0.97006 * 126.58969 * 359.97438 * 24 23 22 26 26 N 1.40185 * 106.82525 * 179.97438 * 24 23 22 27 27 N 1.28666 * 109.50713 * 0.02562 * 26 24 23 28 28 C 1.35326 * 109.99997 * 359.97438 * 27 26 24 29 29 C 1.39431 * 120.35280 * 180.02562 * 20 18 17 30 30 H 0.97002 * 119.99566 * 359.97438 * 1 2 3 31 31 H 1.09010 * 109.68320 * 349.98707 * 10 9 7 32 32 H 1.08997 * 109.68420 * 110.49878 * 10 9 7 33 33 H 1.08993 * 109.51418 * 67.62547 * 11 10 9 34 34 H 1.09005 * 109.50826 * 187.72689 * 11 10 9 35 35 H 1.09000 * 109.51230 * 57.34358 * 13 12 11 36 36 H 1.08996 * 109.51487 * 177.49293 * 13 12 11 37 37 H 1.09002 * 109.47152 * 59.36973 * 16 14 9 38 38 H 1.09000 * 109.47153 * 179.37922 * 16 14 9 39 39 H 0.96991 * 120.00374 * 0.02562 * 17 16 14 40 40 H 1.08004 * 119.42694 * 359.97438 * 21 20 18 41 41 H 1.07997 * 120.95169 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0686 -1.2146 -0.2149 9 7 1.3528 -2.3725 0.2707 10 6 0.1801 -2.3940 1.1594 11 6 0.3886 -3.4922 2.2085 12 8 0.7075 -4.7194 1.5483 13 6 1.9242 -4.6817 0.7986 14 6 1.7944 -3.6445 -0.3226 15 1 1.0598 -3.9835 -1.0530 16 6 3.1499 -3.4515 -1.0055 17 7 3.0229 -2.4518 -2.0689 18 6 4.0970 -2.1178 -2.8114 19 8 5.1712 -2.6456 -2.5984 20 6 3.9692 -1.1094 -3.8833 21 6 2.7336 -0.4999 -4.1382 22 7 2.6033 0.4014 -5.0836 23 6 3.6262 0.7691 -5.8452 24 7 3.7591 1.6609 -6.8781 25 1 3.0603 2.2190 -7.2538 26 7 5.0991 1.6114 -7.2870 27 7 5.7374 0.7587 -6.5651 28 6 4.9010 0.2015 -5.6588 29 6 5.0754 -0.7586 -4.6562 30 1 -0.4849 0.8401 0.0004 31 1 0.0767 -1.4283 1.6544 32 1 -0.7172 -2.6064 0.5782 33 1 1.2073 -3.2118 2.8712 34 1 -0.5244 -3.6176 2.7906 35 1 2.7486 -4.4058 1.4562 36 1 2.1158 -5.6636 0.3659 37 1 3.8810 -3.1111 -0.2722 38 1 3.4789 -4.3981 -1.4342 39 1 2.1660 -2.0304 -2.2386 40 1 1.8742 -0.7738 -3.5443 41 1 6.0393 -1.2148 -4.4857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050954607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:43 Heat of formation + Delta-G solvation = 82.165662 kcal Electronic energy + Delta-G solvation = -28831.253353 eV Core-core repulsion = 24749.852387 eV Total energy + Delta-G solvation = -4081.400966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.50588 -39.89121 -38.66922 -37.97918 -35.49560 -34.13152 -33.75275 -31.97844 -31.76576 -30.81323 -30.26477 -27.33679 -26.07183 -24.82065 -23.97641 -23.53768 -22.82329 -21.81606 -20.61730 -19.77491 -18.81026 -18.47018 -17.20528 -16.73156 -16.29796 -16.26363 -15.95865 -15.67975 -14.88342 -14.74540 -14.49280 -14.18526 -13.94389 -13.82323 -13.54604 -13.31677 -13.09768 -13.04427 -12.76322 -12.67172 -12.12012 -12.03891 -11.68466 -11.59178 -11.16117 -10.97643 -10.84610 -10.49210 -10.32918 -10.16247 -10.11812 -9.73121 -9.54622 -9.47720 -9.20077 -9.07180 -8.78609 -8.44786 -6.85509 -6.01783 -3.50349 0.05836 0.54869 1.83008 1.90817 2.88220 3.19382 3.29707 3.31047 3.33325 3.70399 3.78674 4.10976 4.13633 4.24834 4.46058 4.53829 4.65632 4.97767 5.06990 5.15977 5.22437 5.48415 5.53787 5.63610 5.73574 5.80172 5.94078 5.98731 6.02285 6.09133 6.14618 6.25635 6.44422 6.48421 6.64783 6.85898 6.98709 7.35469 7.40433 7.58251 7.60222 7.79488 7.93775 8.17270 8.52008 8.94567 9.55606 10.14557 11.04110 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.003916 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.432438 B = 7148.469655 C = 8269.331960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.013 3.987 3 Si 0.886 3.114 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.260 4.260 8 H 0.076 0.924 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.124 3.876 15 H 0.043 0.957 16 C 0.135 3.865 17 N -0.685 5.685 18 C 0.562 3.438 19 O -0.551 6.551 20 C -0.196 4.196 21 C 0.223 3.777 22 N -0.488 5.488 23 C 0.293 3.707 24 N -0.485 5.485 25 H 0.453 0.547 26 N 0.011 4.989 27 N -0.193 5.193 28 C -0.078 4.078 29 C 0.077 3.923 30 H 0.256 0.744 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.415 0.585 40 H 0.187 0.813 41 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -2.375 -7.101 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.390 4.390 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.061 0.939 16 C 0.011 3.989 17 N -0.337 5.337 18 C 0.347 3.653 19 O -0.431 6.431 20 C -0.205 4.205 21 C 0.050 3.950 22 N -0.202 5.202 23 C 0.048 3.952 24 N -0.211 5.211 25 H 0.301 0.699 26 N 0.028 4.972 27 N -0.074 5.074 28 C -0.204 4.204 29 C 0.046 3.954 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.203 0.797 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.671 -1.793 -8.104 9.075 hybrid contribution -0.422 1.313 0.547 1.484 sum 3.249 -0.480 -7.557 8.240 Atomic orbital electron populations 1.69993 1.05112 1.25735 1.52930 1.25072 0.95195 0.98032 1.00407 0.86466 0.79784 0.84421 0.77798 1.20044 1.21336 1.21273 1.19297 0.91975 0.83584 1.44110 0.90682 1.44114 1.33766 1.02084 1.51814 1.21412 0.89098 0.97207 0.90451 1.23341 0.99274 0.86048 0.95639 1.87809 1.41558 1.34937 1.66730 1.22861 0.87053 0.98803 0.93600 1.21446 0.93719 0.89303 0.93836 0.93907 1.21252 0.97961 0.90506 0.89148 1.45941 1.12515 1.41897 1.33319 1.17607 0.84653 0.81712 0.81321 1.90754 1.27100 1.54943 1.70263 1.20899 0.95018 1.03316 1.01281 1.23356 0.96837 0.85885 0.88965 1.66768 1.30167 1.16161 1.07084 1.19658 0.92056 0.92237 0.91234 1.47475 1.11491 1.34609 1.27484 0.69894 1.81677 0.84994 1.14067 1.16466 1.74845 1.25451 1.04167 1.02940 1.20385 0.91661 1.05492 1.02824 1.21048 0.99834 0.88166 0.86322 0.93338 0.89060 0.95137 0.94081 0.90220 0.93421 0.89825 0.91014 0.91764 0.74593 0.79665 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.51 11.20 55.49 0.62 -21.89 16 2 C 0.01 0.32 5.01 -17.43 -0.09 0.23 16 3 Si 0.89 19.82 29.57 -169.99 -5.03 14.79 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -5.90 7.09 -15.06 -0.11 -6.01 16 8 H 0.08 1.73 5.76 -52.49 -0.30 1.43 16 9 N -0.59 -12.46 3.03 -164.30 -0.50 -12.96 16 10 C 0.14 3.04 5.39 -3.53 -0.02 3.02 16 11 C 0.03 0.63 6.98 37.31 0.26 0.89 16 12 O -0.39 -7.11 10.74 -35.23 -0.38 -7.49 16 13 C 0.06 0.90 6.29 37.31 0.23 1.14 16 14 C 0.12 2.17 3.21 -67.42 -0.22 1.96 16 15 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 16 C 0.14 2.20 4.45 -4.04 -0.02 2.18 16 17 N -0.69 -11.21 3.70 -61.28 -0.23 -11.44 16 18 C 0.56 9.25 7.77 -12.39 -0.10 9.15 16 19 O -0.55 -10.31 16.39 5.31 0.09 -10.22 16 20 C -0.20 -2.88 5.88 -104.88 -0.62 -3.50 16 21 C 0.22 3.20 10.69 -17.09 -0.18 3.01 16 22 N -0.49 -7.15 10.37 -12.03 -0.12 -7.28 16 23 C 0.29 4.09 8.49 -155.94 -1.32 2.77 16 24 N -0.49 -5.55 7.52 31.15 0.23 -5.31 16 25 H 0.45 3.55 8.96 -182.53 -1.64 1.91 16 26 N 0.01 0.14 13.82 60.35 0.83 0.98 16 27 N -0.19 -2.74 12.40 32.17 0.40 -2.35 16 28 C -0.08 -1.12 7.27 -84.74 -0.62 -1.74 16 29 C 0.08 1.08 9.75 -38.51 -0.38 0.70 16 30 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 31 H 0.09 2.15 6.33 -51.92 -0.33 1.82 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.28 7.58 -51.93 -0.39 0.89 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.41 6.90 5.34 -40.82 -0.22 6.68 16 40 H 0.19 2.53 6.39 -52.48 -0.34 2.20 16 41 H 0.17 2.10 7.71 -52.49 -0.40 1.69 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -28.55 341.73 -7.81 -36.35 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.71 Total: 7.86 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: -3.16 Total: 13.81 kcal Atomic # 7 Polarization: -61.49 SS G_CDS: 1.24 Total: -60.25 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.29 Total: -17.71 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.55 -7.81 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.519 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds