Wall clock time and date at job start Sat Apr 11 2020 03:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00330 * 2 1 4 4 H 1.48505 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47595 * 300.00261 * 3 2 1 6 6 H 1.48501 * 109.46831 * 60.00290 * 3 2 1 7 7 C 1.38819 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99427 * 166.74922 * 7 2 1 9 9 N 1.36933 * 120.00276 * 346.75127 * 7 2 1 10 10 C 1.47154 * 120.97974 * 330.04977 * 9 7 2 11 11 C 1.53296 * 108.38429 * 230.26517 * 10 9 7 12 12 O 1.42958 * 109.22288 * 307.69427 * 11 10 9 13 13 C 1.42963 * 114.16402 * 62.58192 * 12 11 10 14 14 C 1.47143 * 120.98466 * 149.76945 * 9 7 2 15 15 H 1.08992 * 109.68489 * 249.46193 * 14 9 7 16 16 C 1.53008 * 109.68223 * 10.01811 * 14 9 7 17 17 N 1.46505 * 109.46390 * 299.37238 * 16 14 9 18 18 C 1.34778 * 119.99299 * 180.02562 * 17 16 14 19 19 O 1.21562 * 120.00550 * 359.97438 * 18 17 16 20 20 C 1.47719 * 119.99631 * 180.02562 * 18 17 16 21 21 C 1.40114 * 120.35309 * 359.72000 * 20 18 17 22 22 N 1.31266 * 121.15167 * 179.75956 * 21 20 18 23 23 C 1.32716 * 121.80125 * 0.51586 * 22 21 20 24 24 N 1.37109 * 133.41013 * 179.77461 * 23 22 21 25 25 H 0.97006 * 126.58969 * 359.97438 * 24 23 22 26 26 N 1.40185 * 106.82525 * 179.97438 * 24 23 22 27 27 N 1.28666 * 109.50713 * 0.02562 * 26 24 23 28 28 C 1.35326 * 109.99997 * 359.97438 * 27 26 24 29 29 C 1.39431 * 120.35280 * 180.02562 * 20 18 17 30 30 H 0.97002 * 119.99566 * 359.97438 * 1 2 3 31 31 H 1.09010 * 109.68320 * 349.98707 * 10 9 7 32 32 H 1.08997 * 109.68420 * 110.49878 * 10 9 7 33 33 H 1.08993 * 109.51418 * 67.62547 * 11 10 9 34 34 H 1.09005 * 109.50826 * 187.72689 * 11 10 9 35 35 H 1.09000 * 109.51230 * 57.34358 * 13 12 11 36 36 H 1.08996 * 109.51487 * 177.49293 * 13 12 11 37 37 H 1.09002 * 109.47152 * 59.36973 * 16 14 9 38 38 H 1.09000 * 109.47153 * 179.37922 * 16 14 9 39 39 H 0.96991 * 120.00374 * 0.02562 * 17 16 14 40 40 H 1.08004 * 119.42694 * 359.97438 * 21 20 18 41 41 H 1.07997 * 120.95169 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0686 -1.2146 -0.2149 9 7 1.3528 -2.3725 0.2707 10 6 0.1801 -2.3940 1.1594 11 6 0.3886 -3.4922 2.2085 12 8 0.7075 -4.7194 1.5483 13 6 1.9242 -4.6817 0.7986 14 6 1.7944 -3.6445 -0.3226 15 1 1.0598 -3.9835 -1.0530 16 6 3.1499 -3.4515 -1.0055 17 7 3.0229 -2.4518 -2.0689 18 6 4.0970 -2.1178 -2.8114 19 8 5.1712 -2.6456 -2.5984 20 6 3.9692 -1.1094 -3.8833 21 6 2.7336 -0.4999 -4.1382 22 7 2.6033 0.4014 -5.0836 23 6 3.6262 0.7691 -5.8452 24 7 3.7591 1.6609 -6.8781 25 1 3.0603 2.2190 -7.2538 26 7 5.0991 1.6114 -7.2870 27 7 5.7374 0.7587 -6.5651 28 6 4.9010 0.2015 -5.6588 29 6 5.0754 -0.7586 -4.6562 30 1 -0.4849 0.8401 0.0004 31 1 0.0767 -1.4283 1.6544 32 1 -0.7172 -2.6064 0.5782 33 1 1.2073 -3.2118 2.8712 34 1 -0.5244 -3.6176 2.7906 35 1 2.7486 -4.4058 1.4562 36 1 2.1158 -5.6636 0.3659 37 1 3.8810 -3.1111 -0.2722 38 1 3.4789 -4.3981 -1.4342 39 1 2.1660 -2.0304 -2.2386 40 1 1.8742 -0.7738 -3.5443 41 1 6.0393 -1.2148 -4.4857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050954607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:41 Heat of formation + Delta-G solvation = 61.817015 kcal Electronic energy + Delta-G solvation = -28832.135737 eV Core-core repulsion = 24749.852387 eV Total energy + Delta-G solvation = -4082.283350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.138 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.58430 -41.17507 -40.05299 -39.22924 -36.95450 -35.34937 -35.18871 -33.43657 -32.90172 -32.30956 -31.54565 -28.96732 -27.39031 -25.94760 -25.28388 -25.09261 -23.90334 -23.27134 -21.86902 -21.31867 -19.88446 -19.71818 -18.60726 -18.03581 -17.60340 -17.51789 -17.31354 -17.03559 -16.26083 -16.21099 -16.11446 -15.48719 -15.45074 -15.12359 -14.92810 -14.64942 -14.43242 -14.30456 -14.17574 -13.79110 -13.51220 -13.20566 -13.08767 -12.91956 -12.73222 -12.69627 -12.43392 -12.12660 -11.94069 -11.79810 -11.43960 -11.21751 -10.78390 -10.61194 -10.56072 -10.51143 -10.34112 -9.83388 -8.59676 -7.84662 -5.32732 -1.02566 -0.59287 0.81905 0.83530 1.38223 1.48454 1.51369 1.65768 2.07030 2.45301 2.50834 2.68348 2.99721 3.06051 3.10013 3.31483 3.42499 3.49786 3.55112 3.80671 4.06255 4.13927 4.28644 4.39452 4.46623 4.53234 4.64187 4.67935 4.71408 4.73405 4.83630 4.92060 5.07216 5.17956 5.36877 5.51695 5.60457 5.68528 5.74496 6.25992 6.34844 6.41262 6.51489 6.61065 7.13786 7.19997 7.80921 8.36959 9.19544 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.015360 B = 0.003916 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.432438 B = 7148.469655 C = 8269.331960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 0.926 3.074 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.298 1.298 7 C -0.239 4.239 8 H 0.074 0.926 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.398 6.398 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.043 0.957 16 C 0.140 3.860 17 N -0.687 5.687 18 C 0.567 3.433 19 O -0.574 6.574 20 C -0.201 4.201 21 C 0.223 3.777 22 N -0.496 5.496 23 C 0.286 3.714 24 N -0.465 5.465 25 H 0.469 0.531 26 N 0.017 4.983 27 N -0.206 5.206 28 C -0.086 4.086 29 C 0.085 3.915 30 H 0.250 0.750 31 H 0.064 0.936 32 H 0.009 0.991 33 H 0.043 0.957 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.119 0.881 37 H 0.057 0.943 38 H 0.090 0.910 39 H 0.413 0.587 40 H 0.189 0.811 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 -3.241 -7.596 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.219 4.219 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.331 5.331 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.317 6.317 13 C -0.023 4.023 14 C 0.019 3.981 15 H 0.061 0.939 16 C 0.016 3.984 17 N -0.337 5.337 18 C 0.353 3.647 19 O -0.455 6.455 20 C -0.210 4.210 21 C 0.050 3.950 22 N -0.210 5.210 23 C 0.040 3.960 24 N -0.193 5.193 25 H 0.320 0.680 26 N 0.034 4.966 27 N -0.087 5.087 28 C -0.211 4.211 29 C 0.054 3.946 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.137 0.863 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.252 0.748 40 H 0.206 0.794 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.327 -2.663 -8.614 10.001 hybrid contribution -0.593 1.566 0.633 1.790 sum 3.734 -1.097 -7.981 8.879 Atomic orbital electron populations 1.70083 1.05862 1.25402 1.55187 1.25388 0.95423 0.99468 1.01639 0.85840 0.78835 0.82798 0.76842 1.20245 1.21905 1.22480 1.19344 0.91785 0.84119 1.41640 0.90843 1.44316 1.33492 1.02952 1.52341 1.21228 0.88486 0.97080 0.90871 1.23197 1.00442 0.84984 0.94570 1.87812 1.42465 1.34516 1.66876 1.23014 0.86371 1.00010 0.92868 1.21583 0.94138 0.87967 0.94420 0.93919 1.21238 0.96718 0.91555 0.88889 1.45943 1.12466 1.41969 1.33336 1.17734 0.84105 0.81537 0.81309 1.90740 1.27815 1.55916 1.71058 1.20704 0.95480 1.03495 1.01339 1.23376 0.96841 0.85816 0.88971 1.66782 1.30462 1.16409 1.07385 1.19783 0.91887 0.92674 0.91649 1.47485 1.11470 1.33909 1.26480 0.67973 1.81636 0.85416 1.13499 1.16034 1.74862 1.25772 1.04755 1.03328 1.20489 0.91876 1.05731 1.03041 1.21145 1.00004 0.87678 0.85732 0.94072 0.91779 0.97270 0.93895 0.88063 0.93210 0.86349 0.92459 0.89247 0.74784 0.79416 0.80710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.99 11.20 21.65 0.24 -46.75 16 2 C -0.02 -1.05 5.01 84.86 0.42 -0.62 16 3 Si 0.93 40.97 29.57 68.60 2.03 43.00 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -10.72 7.09 84.04 0.60 -10.13 16 8 H 0.07 3.34 5.76 -2.91 -0.02 3.32 16 9 N -0.61 -25.07 3.03 -673.72 -2.04 -27.11 16 10 C 0.15 6.28 5.39 86.35 0.47 6.74 16 11 C 0.05 1.58 6.98 72.08 0.50 2.08 16 12 O -0.40 -13.46 10.74 -148.98 -1.60 -15.06 16 13 C 0.06 1.64 6.29 72.08 0.45 2.10 16 14 C 0.13 4.16 3.21 44.97 0.14 4.31 16 15 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 16 C 0.14 4.30 4.45 86.38 0.38 4.68 16 17 N -0.69 -21.71 3.70 -466.07 -1.72 -23.43 16 18 C 0.57 18.06 7.77 86.75 0.67 18.73 16 19 O -0.57 -20.78 16.39 -3.91 -0.06 -20.84 16 20 C -0.20 -5.72 5.88 -20.03 -0.12 -5.84 16 21 C 0.22 6.24 10.69 85.23 0.91 7.15 16 22 N -0.50 -14.03 10.37 -191.98 -1.99 -16.02 16 23 C 0.29 7.57 8.49 134.01 1.14 8.71 16 24 N -0.47 -9.80 7.52 -55.38 -0.42 -10.22 16 25 H 0.47 6.39 8.96 -213.26 -1.91 4.48 16 26 N 0.02 0.42 13.82 37.02 0.51 0.93 16 27 N -0.21 -5.57 12.40 -52.14 -0.65 -6.22 16 28 C -0.09 -2.35 7.27 39.63 0.29 -2.06 16 29 C 0.09 2.27 9.75 22.96 0.22 2.50 16 30 H 0.25 12.71 8.31 -92.71 -0.77 11.94 16 31 H 0.06 3.06 6.33 -2.38 -0.02 3.04 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 38 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.41 13.47 5.34 -92.71 -0.50 12.97 16 40 H 0.19 5.08 6.39 -2.91 -0.02 5.06 16 41 H 0.18 4.24 7.71 -2.91 -0.02 4.22 16 Total: -1.00 -59.53 341.73 -0.90 -60.43 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -1.28 Total: 22.94 kcal Atomic # 6 Polarization: 32.27 SS G_CDS: 6.09 Total: 38.36 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -6.07 Total: -128.82 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -1.66 Total: -35.91 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -59.53 -0.90 -60.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050954607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.245 kcal (2) G-P(sol) polarization free energy of solvation -59.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds