Wall clock time and date at job start Sat Apr 11 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48502 * 109.47041 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46759 * 299.99954 * 3 2 1 6 6 H 1.48497 * 109.47232 * 59.99755 * 3 2 1 7 7 C 1.38813 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00298 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50242 * 130.84205 * 359.96845 * 9 7 2 11 11 H 1.09003 * 115.85588 * 0.38646 * 10 9 7 12 12 C 1.55844 * 101.05450 * 233.99346 * 10 9 7 13 13 C 1.54860 * 103.44323 * 327.06186 * 12 10 9 14 14 C 1.50243 * 130.83725 * 180.02562 * 9 7 2 15 15 H 1.09001 * 115.85945 * 0.32836 * 14 9 7 16 16 C 1.55850 * 101.04739 * 234.65768 * 14 9 7 17 17 H 1.09004 * 110.62575 * 85.55035 * 16 14 9 18 18 N 1.46505 * 110.62445 * 208.57066 * 16 14 9 19 19 C 1.34773 * 119.99643 * 274.01723 * 18 16 14 20 20 O 1.21276 * 120.00598 * 359.97438 * 19 18 16 21 21 C 1.50708 * 119.99503 * 180.02562 * 19 18 16 22 22 H 1.09000 * 115.55059 * 34.41313 * 21 19 18 23 23 C 1.52998 * 117.49554 * 248.74118 * 21 19 18 24 24 C 1.53006 * 117.49422 * 180.08452 * 21 19 18 25 25 H 1.08996 * 117.49908 * 359.97438 * 24 21 19 26 26 C 1.50700 * 117.49270 * 214.97649 * 24 21 19 27 27 C 1.38420 * 122.53605 * 120.01027 * 26 24 21 28 28 C 1.33388 * 114.92246 * 179.97438 * 27 26 24 29 29 S 1.75893 * 109.59301 * 359.97438 * 28 27 26 30 30 C 1.33389 * 122.54196 * 299.70653 * 26 24 21 31 31 C 1.55851 * 101.04677 * 126.05587 * 10 9 7 32 32 H 0.96997 * 119.99651 * 0.02562 * 1 2 3 33 33 H 1.08994 * 110.62741 * 85.54804 * 12 10 9 34 34 H 1.08997 * 110.62372 * 208.57280 * 12 10 9 35 35 H 1.09002 * 110.62479 * 241.50976 * 13 12 10 36 36 H 1.09003 * 110.62357 * 118.48929 * 13 12 10 37 37 H 0.96994 * 119.99505 * 94.01736 * 18 16 14 38 38 H 1.09003 * 117.49756 * 0.02562 * 23 21 19 39 39 H 1.09004 * 117.49939 * 144.99658 * 23 21 19 40 40 H 1.07998 * 122.54189 * 359.94432 * 27 26 24 41 41 H 1.08004 * 125.20687 * 180.02562 * 28 27 26 42 42 H 1.08000 * 125.19905 * 0.03594 * 30 26 24 43 43 H 1.09001 * 110.61971 * 151.43229 * 31 10 9 44 44 H 1.09005 * 110.62680 * 274.44911 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1501 -2.6706 0.0007 11 1 -0.8014 -1.7965 -0.0059 12 6 -0.2744 -3.6099 1.2379 13 6 1.0667 -4.3843 1.2382 14 6 1.8186 -3.8073 0.0016 15 1 2.9011 -3.9345 0.0081 16 6 1.0817 -4.3803 -1.2465 17 1 1.6506 -4.1790 -2.1543 18 7 0.8460 -5.8180 -1.0916 19 6 1.7999 -6.6997 -1.4508 20 8 2.8532 -6.3032 -1.9025 21 6 1.5571 -8.1786 -1.2920 22 1 0.5309 -8.5069 -1.4568 23 6 2.3738 -8.9185 -0.2307 24 6 2.6795 -9.1282 -1.7159 25 1 3.5932 -8.6833 -2.1099 26 6 2.2814 -10.4461 -2.3288 27 6 2.6592 -10.8166 -3.6079 28 6 2.2234 -12.0156 -3.9975 29 16 1.2810 -12.7490 -2.7061 30 6 1.5433 -11.3464 -1.6777 31 6 -0.2742 -3.6109 -1.2360 32 1 -0.4849 0.8400 -0.0004 33 1 -0.3817 -3.0276 2.1530 34 1 -1.1134 -4.2951 1.1170 35 1 0.8927 -5.4535 1.1175 36 1 1.6244 -4.1858 2.1535 37 1 0.0034 -6.1351 -0.7307 38 1 3.0863 -8.3356 0.3530 39 1 1.8849 -9.7337 0.3028 40 1 3.2608 -10.1828 -4.2425 41 1 2.4198 -12.4673 -4.9587 42 1 1.1633 -11.2309 -0.6734 43 1 -1.1133 -4.2960 -1.1146 44 1 -0.3815 -3.0291 -2.1515 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095614721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:39 Heat of formation + Delta-G solvation = 73.486371 kcal Electronic energy + Delta-G solvation = -25877.704199 eV Core-core repulsion = 22309.927334 eV Total energy + Delta-G solvation = -3567.776865 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30696 -39.25382 -38.05250 -35.59502 -33.88443 -32.31308 -29.66862 -29.26284 -28.99821 -27.70788 -25.49984 -24.57169 -23.64104 -21.71883 -21.27436 -20.17750 -19.42657 -18.80931 -18.52075 -18.29576 -17.17587 -16.72526 -15.88133 -15.43219 -14.99833 -14.78628 -14.33630 -14.12301 -13.90812 -13.64580 -13.42676 -12.96022 -12.95285 -12.40910 -12.28502 -12.23897 -11.94140 -11.76018 -11.50219 -11.05817 -11.03616 -10.92985 -10.89254 -10.87255 -10.80143 -10.64818 -10.20713 -10.05941 -9.83991 -9.63434 -9.38434 -9.24756 -9.05302 -8.93745 -8.56439 -8.48079 -6.90955 -5.72812 -3.10611 0.70653 1.37922 1.69655 2.28197 2.75624 3.38649 3.42101 3.46123 3.48062 3.83767 4.39459 4.46610 4.61471 4.73258 4.76182 4.96959 5.09056 5.16938 5.22021 5.33508 5.39265 5.48978 5.56862 5.63869 5.77314 5.82242 5.85624 5.94923 5.97571 6.07218 6.09835 6.12203 6.26939 6.31880 6.34164 6.54046 6.60941 6.69814 6.81726 6.97184 7.00570 7.27506 7.53143 7.75464 7.87029 8.17116 8.52702 9.10776 9.73206 10.53632 11.36967 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.031100 B = 0.002262 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.110096 B =12376.193843 C =12649.179402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.917 3.083 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.208 4.208 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.154 3.846 11 H 0.155 0.845 12 C -0.136 4.136 13 C -0.129 4.129 14 C 0.128 3.872 15 H 0.083 0.917 16 C 0.128 3.872 17 H 0.083 0.917 18 N -0.707 5.707 19 C 0.537 3.463 20 O -0.543 6.543 21 C -0.174 4.174 22 H 0.122 0.878 23 C -0.143 4.143 24 C -0.067 4.067 25 H 0.128 0.872 26 C -0.065 4.065 27 C -0.123 4.123 28 C -0.212 4.212 29 S 0.088 5.912 30 C -0.214 4.214 31 C -0.141 4.141 32 H 0.253 0.747 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.396 0.604 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.055 0.945 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -24.328 -3.013 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.209 4.209 3 Si 0.747 3.253 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.336 4.336 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.176 4.176 13 C -0.169 4.169 14 C 0.019 3.981 15 H 0.101 0.899 16 C 0.022 3.978 17 H 0.101 0.899 18 N -0.357 5.357 19 C 0.323 3.677 20 O -0.420 6.420 21 C -0.196 4.196 22 H 0.140 0.860 23 C -0.181 4.181 24 C -0.088 4.088 25 H 0.146 0.854 26 C -0.078 4.078 27 C -0.154 4.154 28 C -0.347 4.347 29 S 0.352 5.648 30 C -0.349 4.349 31 C -0.181 4.181 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.230 0.770 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.161 0.839 41 H 0.182 0.818 42 H 0.182 0.818 43 H 0.073 0.927 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.949 -25.064 -3.193 25.285 hybrid contribution 0.690 1.903 -0.030 2.025 sum -0.258 -23.161 -3.223 23.386 Atomic orbital electron populations 1.69446 1.04984 1.24845 1.57965 1.24702 0.95664 0.97517 1.02986 0.85953 0.78680 0.83433 0.77188 1.20546 1.21783 1.21830 1.19117 0.90403 0.81866 1.42225 0.90267 1.46496 1.01591 0.98835 1.84191 1.23766 0.87731 0.95155 0.88622 0.82863 1.23041 0.95142 0.98152 1.01259 1.22881 0.97572 0.97610 0.98808 1.23185 0.96226 0.86138 0.92577 0.89866 1.22873 0.98014 0.76715 1.00153 0.89890 1.46172 1.18192 1.07164 1.64171 1.19517 0.84026 0.86537 0.77647 1.90694 1.25873 1.80129 1.45331 1.22405 0.98408 0.91591 1.07160 0.86037 1.23096 1.02015 1.01726 0.91213 1.20730 0.99369 0.91922 0.96758 0.85377 1.18236 0.99626 0.95610 0.94287 1.20086 1.02608 0.96584 0.96081 1.25594 1.05813 0.99787 1.03497 1.84263 1.52717 1.20668 1.07181 1.25448 1.07409 0.97754 1.04331 1.23493 0.93770 0.98467 1.02322 0.93631 0.92686 0.93657 0.93017 0.93107 0.77017 0.87518 0.87834 0.83908 0.81802 0.81779 0.92663 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.18 10.47 55.49 0.58 -25.60 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.21 -5.75 10.59 -15.06 -0.16 -5.91 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.59 -14.70 2.98 -145.82 -0.43 -15.13 16 10 C 0.15 3.44 4.72 -62.80 -0.30 3.14 16 11 H 0.15 3.93 5.52 -51.93 -0.29 3.65 16 12 C -0.14 -2.61 6.44 -24.23 -0.16 -2.76 16 13 C -0.13 -2.36 6.34 -24.25 -0.15 -2.52 16 14 C 0.13 2.68 5.29 -62.82 -0.33 2.35 16 15 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 16 C 0.13 2.39 3.17 -64.85 -0.21 2.19 16 17 H 0.08 1.75 7.71 -51.93 -0.40 1.35 16 18 N -0.71 -10.32 3.66 -50.84 -0.19 -10.50 16 19 C 0.54 8.03 7.61 -10.98 -0.08 7.94 16 20 O -0.54 -10.33 15.99 5.56 0.09 -10.24 16 21 C -0.17 -1.88 5.85 -91.77 -0.54 -2.42 16 22 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 23 C -0.14 -1.33 9.63 -26.69 -0.26 -1.58 16 24 C -0.07 -0.70 5.66 -91.73 -0.52 -1.22 16 25 H 0.13 1.54 7.67 -51.93 -0.40 1.15 16 26 C -0.07 -0.63 5.52 -106.25 -0.59 -1.21 16 27 C -0.12 -1.13 9.98 -41.21 -0.41 -1.54 16 28 C -0.21 -1.68 11.23 29.04 0.33 -1.35 16 29 S 0.09 0.67 23.34 -107.50 -2.51 -1.84 16 30 C -0.21 -1.79 10.39 29.04 0.30 -1.48 16 31 C -0.14 -2.65 6.20 -23.65 -0.15 -2.80 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 35 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.40 4.72 8.02 -40.82 -0.33 4.39 16 38 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.10 0.72 6.54 -51.93 -0.34 0.39 16 40 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 42 H 0.16 1.08 6.63 -52.49 -0.35 0.74 16 43 H 0.05 0.87 7.34 -51.93 -0.38 0.49 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -31.03 366.35 -11.43 -42.46 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.16 Total: 7.93 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.31 Total: -9.66 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.04 Total: -51.24 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -2.51 Total: -1.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.03 -11.43 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095614721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.945 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds