Wall clock time and date at job start Sat Apr 11 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35562 * 125.82800 * 2 1 4 4 N 1.35402 * 107.16223 * 180.02562 * 3 2 1 5 5 H 0.97000 * 126.43580 * 179.97438 * 4 3 2 6 6 C 1.36663 * 107.11924 * 0.02562 * 4 3 2 7 7 C 1.47415 * 125.86035 * 179.97438 * 6 4 3 8 8 O 1.21605 * 120.00172 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99760 * 179.97438 * 7 6 4 10 10 C 1.46501 * 119.99558 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.46542 * 180.02562 * 10 9 7 12 12 C 1.38221 * 120.01102 * 259.97498 * 11 10 9 13 13 C 1.38220 * 120.02576 * 179.77155 * 12 11 10 14 14 C 1.38277 * 120.04953 * 0.51339 * 13 12 11 15 15 C 1.50700 * 119.98580 * 179.77046 * 14 13 12 16 16 N 1.46498 * 109.46769 * 269.71637 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31611 * 120.00081 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99814 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47483 * 90.00178 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47495 * 329.99664 * 21 19 17 25 25 C 1.38170 * 120.02576 * 359.48562 * 14 13 12 26 26 C 1.38441 * 120.01358 * 80.00531 * 11 10 9 27 27 F 1.35100 * 120.02602 * 359.94703 * 26 11 10 28 28 N 1.31605 * 108.27529 * 0.22024 * 6 4 3 29 29 H 1.09002 * 109.47478 * 89.99061 * 1 2 3 30 30 H 1.09003 * 109.46955 * 209.99828 * 1 2 3 31 31 H 1.09003 * 109.46962 * 329.99014 * 1 2 3 32 32 H 1.08003 * 126.41790 * 0.05377 * 3 2 1 33 33 H 0.96997 * 119.99861 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.47030 * 60.00383 * 10 9 7 35 35 H 1.08998 * 109.47121 * 299.99959 * 10 9 7 36 36 H 1.07997 * 119.98840 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.98077 * 180.25523 * 13 12 11 38 38 H 1.09004 * 109.47210 * 149.71995 * 15 14 13 39 39 H 1.08994 * 109.47121 * 29.71965 * 15 14 13 40 40 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 41 41 H 0.97008 * 120.00329 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.01636 * 180.23671 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0991 0.0000 4 7 3.5833 0.6658 -0.0006 5 1 4.3789 1.2207 -0.0011 6 6 3.5464 -0.7004 -0.0015 7 6 4.7174 -1.5959 -0.0029 8 8 5.8401 -1.1287 -0.0038 9 7 4.5436 -2.9324 -0.0032 10 6 5.7073 -3.8223 -0.0052 11 6 5.2432 -5.2560 -0.0057 12 6 5.2298 -5.9788 1.1724 13 6 4.7996 -7.2924 1.1730 14 6 4.3923 -7.8882 -0.0064 15 6 3.9285 -9.3221 -0.0050 16 7 5.0720 -10.2054 -0.2466 17 6 4.8930 -11.5625 -0.2836 18 1 3.9081 -11.9814 -0.1390 19 6 5.9774 -12.3998 -0.5069 20 7 5.8053 -13.7041 -0.5428 21 14 7.6810 -11.6752 -0.7562 22 1 8.3636 -11.5518 0.5568 23 1 8.4722 -12.5650 -1.6437 24 1 7.5616 -10.3330 -1.3802 25 6 4.4048 -7.1677 -1.1853 26 6 4.8306 -5.8499 -1.1863 27 9 4.8429 -5.1442 -2.3383 28 7 2.2861 -1.0792 -0.0063 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5140 32 1 1.9712 2.1277 0.0008 33 1 3.6480 -3.3050 -0.0021 34 1 6.3092 -3.6352 0.8841 35 1 6.3068 -3.6345 -0.8959 36 1 5.5516 -5.5158 2.0934 37 1 4.7855 -7.8552 2.0947 38 1 3.1867 -9.4648 -0.7908 39 1 3.4841 -9.5592 0.9616 40 1 5.9566 -9.8292 -0.3762 41 1 6.5631 -14.2893 -0.6993 42 1 4.0830 -7.6320 -2.1058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486525821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:53 Heat of formation + Delta-G solvation = 12.415757 kcal Electronic energy + Delta-G solvation = -26632.037989 eV Core-core repulsion = 22527.692478 eV Total energy + Delta-G solvation = -4104.345511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.91391 -42.69850 -39.90074 -39.10579 -35.83699 -34.63503 -33.65108 -32.44272 -31.62462 -30.73476 -30.42017 -28.08565 -27.05650 -24.93738 -23.46196 -22.89798 -22.12535 -20.96810 -20.89390 -20.68763 -19.17089 -18.00169 -17.04555 -16.73506 -16.68697 -16.39736 -16.12303 -15.57943 -15.35224 -14.89393 -14.63987 -14.54210 -14.27930 -14.12782 -13.78283 -13.48673 -13.43468 -13.29233 -13.04232 -12.96346 -12.64425 -12.39911 -12.21653 -12.02918 -11.62592 -11.39475 -10.90036 -10.78826 -10.73561 -10.66967 -10.56782 -10.19505 -9.64826 -9.52432 -8.97770 -8.94443 -8.86389 -8.64830 -7.31699 -5.81728 -3.18883 0.92927 0.97307 1.21597 2.11160 2.20534 3.00849 3.10984 3.35726 3.39519 3.43586 3.58188 3.86330 4.18350 4.32122 4.47505 4.55489 4.61411 4.65810 4.75684 4.95914 5.05080 5.29562 5.31206 5.33337 5.36282 5.44806 5.48063 5.49481 5.56435 5.63589 5.81471 5.94080 5.97056 6.03354 6.14644 6.24730 6.26892 6.42100 6.66064 6.78590 6.88210 7.00455 7.40113 7.73245 7.92175 8.36364 9.14215 9.86321 10.05128 11.36087 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.002159 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.202295 B =12964.735357 C =13531.685024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.000 4.000 3 C -0.024 4.024 4 N -0.524 5.524 5 H 0.431 0.569 6 C 0.148 3.852 7 C 0.608 3.392 8 O -0.543 6.543 9 N -0.696 5.696 10 C 0.169 3.831 11 C -0.159 4.159 12 C -0.073 4.073 13 C -0.117 4.117 14 C -0.041 4.041 15 C 0.189 3.811 16 N -0.750 5.750 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.883 3.117 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.141 4.141 26 C 0.114 3.886 27 F -0.137 7.137 28 N -0.438 5.438 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.187 0.813 33 H 0.415 0.585 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.363 0.637 41 H 0.261 0.739 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 31.988 2.911 33.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.134 4.134 3 C -0.163 4.163 4 N -0.125 5.125 5 H 0.270 0.730 6 C -0.114 4.114 7 C 0.392 3.608 8 O -0.420 6.420 9 N -0.348 5.348 10 C 0.046 3.954 11 C -0.161 4.161 12 C -0.091 4.091 13 C -0.136 4.136 14 C -0.042 4.042 15 C 0.062 3.938 16 N -0.396 5.396 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.189 4.189 20 N -0.578 5.578 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.160 4.160 26 C 0.094 3.906 27 F -0.116 7.116 28 N -0.162 5.162 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.204 0.796 33 H 0.252 0.748 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.196 0.804 41 H 0.071 0.929 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.094 31.227 2.858 32.150 hybrid contribution 1.532 1.454 -0.493 2.169 sum -5.561 32.681 2.365 33.235 Atomic orbital electron populations 1.20085 0.86860 1.03116 1.02657 1.20949 0.97130 0.87868 1.07439 1.22766 0.82936 1.01132 1.09437 1.42880 1.09248 1.07498 1.52915 0.72986 1.22558 0.93725 0.82356 1.12716 1.16428 0.85532 0.81954 0.76933 1.90853 1.23718 1.76082 1.51326 1.45727 1.11324 1.04472 1.73231 1.20134 0.87261 0.84112 1.03854 1.19697 1.06999 0.96205 0.93172 1.20934 0.97510 0.94122 0.96576 1.21250 0.99005 0.94536 0.98781 1.20312 0.94923 0.97015 0.91953 1.19704 0.91099 0.83195 0.99781 1.42666 1.04935 1.03497 1.88507 1.19038 0.96460 0.80110 1.42208 0.88987 1.24660 0.97513 0.95099 1.01580 1.69695 1.30469 1.01655 1.56011 0.86571 0.85795 0.78350 0.77991 1.20940 1.21604 1.20253 1.21175 1.02461 0.92216 1.00161 1.17542 1.01309 0.90421 0.81330 1.91498 1.94170 1.78407 1.47514 1.70119 0.99130 1.31077 1.15868 0.91048 0.90738 0.91033 0.79584 0.74836 0.89603 0.89944 0.84911 0.84682 0.94170 0.93926 0.80395 0.92938 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.42 36.00 0.38 -0.01 16 2 C 0.00 0.00 7.07 -83.00 -0.59 -0.58 16 3 C -0.02 -0.14 11.91 -16.93 -0.20 -0.35 16 4 N -0.52 -3.93 6.14 -10.78 -0.07 -3.99 16 5 H 0.43 2.28 8.96 -40.82 -0.37 1.92 16 6 C 0.15 1.56 7.95 -154.53 -1.23 0.33 16 7 C 0.61 7.13 7.81 -12.52 -0.10 7.03 16 8 O -0.54 -7.47 17.09 5.27 0.09 -7.38 16 9 N -0.70 -7.51 5.55 -62.57 -0.35 -7.86 16 10 C 0.17 1.82 5.52 -5.19 -0.03 1.79 16 11 C -0.16 -1.87 5.25 -104.55 -0.55 -2.42 16 12 C -0.07 -0.81 9.67 -39.59 -0.38 -1.19 16 13 C -0.12 -1.53 9.70 -39.57 -0.38 -1.91 16 14 C -0.04 -0.63 5.25 -104.63 -0.55 -1.17 16 15 C 0.19 3.46 6.38 -5.19 -0.03 3.43 16 16 N -0.75 -17.40 5.40 -61.09 -0.33 -17.73 16 17 C -0.25 -6.91 10.47 -15.06 -0.16 -7.07 16 18 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 21 Si 0.88 22.01 27.74 -169.99 -4.71 17.30 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 25 C -0.14 -2.05 9.68 -39.51 -0.38 -2.43 16 26 C 0.11 1.54 7.25 -39.41 -0.29 1.25 16 27 F -0.14 -1.93 16.66 2.25 0.04 -1.89 16 28 N -0.44 -4.76 10.89 -7.50 -0.08 -4.84 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.19 0.39 8.06 -52.48 -0.42 -0.03 16 33 H 0.42 4.32 8.14 -40.82 -0.33 3.99 16 34 H 0.09 0.84 8.00 -51.93 -0.42 0.42 16 35 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 36 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16 37 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 40 H 0.36 8.38 5.52 -40.82 -0.23 8.15 16 41 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -34.47 371.78 -8.76 -43.23 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.14 Total: 8.91 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -4.59 Total: -3.18 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: -0.05 Total: -62.58 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.38 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.47 -8.76 -43.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486525821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.646 kcal (2) G-P(sol) polarization free energy of solvation -34.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds