Wall clock time and date at job start Sat Apr 11 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46704 * 2 1 4 4 H 1.08998 * 109.47094 * 304.99892 * 3 2 1 5 5 F 1.39899 * 109.47134 * 65.00214 * 3 2 1 6 6 C 1.50702 * 109.46686 * 185.00318 * 3 2 1 7 7 O 1.21286 * 119.99931 * 314.99704 * 6 3 2 8 8 N 1.34777 * 120.00065 * 135.00370 * 6 3 2 9 9 C 1.46498 * 119.99798 * 359.97438 * 8 6 3 10 10 C 1.46507 * 119.99732 * 179.97438 * 8 6 3 11 11 C 1.53781 * 113.68630 * 197.45095 * 10 8 6 12 12 C 1.53780 * 87.08198 * 89.12654 * 11 10 8 13 13 N 1.46503 * 113.61576 * 270.88431 * 12 11 10 14 14 C 1.34780 * 119.99972 * 256.33533 * 13 12 11 15 15 O 1.21283 * 119.99495 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99997 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47144 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00055 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00114 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00413 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47231 * 90.00091 * 22 20 18 24 24 H 1.48506 * 109.47166 * 209.99960 * 22 20 18 25 25 H 1.48500 * 109.46762 * 329.99919 * 22 20 18 26 26 C 1.53778 * 87.08076 * 25.43099 * 12 11 10 27 27 H 1.08998 * 109.46982 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46967 * 299.99944 * 1 2 3 29 29 H 1.08999 * 109.47037 * 59.99563 * 1 2 3 30 30 H 1.08996 * 109.46864 * 240.00339 * 2 1 3 31 31 H 1.08999 * 109.47037 * 120.00437 * 2 1 3 32 32 H 1.08999 * 109.47149 * 265.42411 * 9 8 6 33 33 H 1.09002 * 109.46971 * 25.43511 * 9 8 6 34 34 H 1.09006 * 109.46346 * 145.43000 * 9 8 6 35 35 H 1.08995 * 112.84786 * 66.18342 * 10 8 6 36 36 H 1.08999 * 113.61144 * 203.67569 * 11 10 8 37 37 H 1.09001 * 113.61717 * 334.57713 * 11 10 8 38 38 H 1.08998 * 113.68973 * 139.99207 * 12 11 10 39 39 H 0.97001 * 120.00143 * 76.32838 * 13 12 11 40 40 H 1.09001 * 109.47142 * 299.99517 * 16 14 13 41 41 H 1.08997 * 109.47258 * 59.99615 * 16 14 13 42 42 H 0.96998 * 119.99849 * 179.97438 * 21 20 18 43 43 H 1.08998 * 113.61719 * 220.01940 * 26 12 11 44 44 H 1.08999 * 113.61830 * 89.11530 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1239 7 8 4.2064 0.6811 0.5446 8 7 4.1466 2.2942 -0.9775 9 6 3.3439 3.2158 -1.7852 10 6 5.6068 2.2962 -1.0975 11 6 6.1703 3.5640 -1.7608 12 6 6.2321 4.1785 -0.3525 13 7 5.0018 4.8698 0.0407 14 6 4.9514 6.2166 0.0260 15 8 5.9247 6.8561 -0.3124 16 6 3.6856 6.9277 0.4299 17 16 3.9329 8.7165 0.3067 18 6 2.3448 9.2810 0.8201 19 1 1.5798 8.5683 1.0906 20 6 2.0770 10.6417 0.8770 21 7 0.8907 11.0636 1.2611 22 14 3.3999 11.8745 0.4085 23 1 3.3093 12.1699 -1.0439 24 1 3.2051 13.1275 1.1815 25 1 4.7371 11.3062 0.7156 26 6 6.3296 2.7410 0.1849 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.1532 2.7711 -2.7619 33 1 2.3962 3.4086 -1.2823 34 1 3.8852 4.1533 -1.9122 35 1 5.9979 1.3712 -1.5208 36 1 7.1494 3.4194 -2.2175 37 1 5.4624 4.0616 -2.4236 38 1 7.1277 4.7734 -0.1731 39 1 4.2234 4.3583 0.3116 40 1 2.8729 6.6266 -0.2312 41 1 3.4339 6.6660 1.4576 42 1 0.7037 12.0145 1.3012 43 1 5.7502 2.5740 1.0930 44 1 7.3522 2.3713 0.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701921189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:38 Heat of formation + Delta-G solvation = -88.787259 kcal Electronic energy + Delta-G solvation = -27069.265770 eV Core-core repulsion = 23063.682968 eV Total energy + Delta-G solvation = -4005.582803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.20227 -41.26388 -39.36413 -38.02391 -35.08114 -34.30094 -33.10474 -32.45698 -29.42166 -28.27360 -27.81415 -25.78756 -25.62662 -24.54832 -22.56835 -21.05078 -20.28661 -19.04869 -18.17982 -17.77215 -17.29788 -16.81824 -16.44011 -16.14326 -15.93983 -15.51977 -15.04849 -14.96857 -14.75421 -14.50426 -14.20586 -13.88549 -13.54450 -13.44076 -13.28753 -13.10370 -12.85462 -12.78359 -12.65397 -12.31960 -12.23590 -12.14386 -11.98125 -11.50965 -11.29116 -11.16851 -11.10342 -11.03002 -10.81581 -10.60292 -10.01093 -9.88293 -9.60214 -9.11951 -9.04768 -9.00012 -8.53572 -6.94944 -6.30847 -4.03092 1.98069 2.30746 2.70708 2.86159 3.25461 3.31304 3.48508 3.60174 3.68876 4.02291 4.10642 4.17631 4.24034 4.30946 4.45009 4.52700 4.64282 4.70474 4.79892 4.91171 4.97602 5.03492 5.08186 5.19372 5.22359 5.27654 5.33266 5.35229 5.49330 5.54527 5.63804 5.66656 5.69051 5.72439 5.79532 5.81374 5.96235 6.06773 6.54192 6.77467 7.52405 7.57986 7.92162 8.39796 8.40877 9.15171 10.78361 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003215 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.373255 B = 8708.428563 C =10288.617645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.139 4.139 3 C 0.075 3.925 4 H 0.106 0.894 5 F -0.186 7.186 6 C 0.493 3.507 7 O -0.513 6.513 8 N -0.594 5.594 9 C 0.051 3.949 10 C 0.120 3.880 11 C -0.159 4.159 12 C 0.124 3.876 13 N -0.720 5.720 14 C 0.532 3.468 15 O -0.515 6.515 16 C -0.125 4.125 17 S -0.139 6.139 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.149 4.149 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.398 0.602 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.081 0.919 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.036 -23.662 -7.488 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.177 4.177 3 C 0.036 3.964 4 H 0.123 0.877 5 F -0.166 7.166 6 C 0.279 3.721 7 O -0.387 6.387 8 N -0.329 5.329 9 C -0.091 4.091 10 C 0.017 3.983 11 C -0.197 4.197 12 C 0.017 3.983 13 N -0.375 5.375 14 C 0.318 3.682 15 O -0.389 6.389 16 C -0.276 4.276 17 S 0.087 5.913 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.188 4.188 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.233 0.767 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.886 -22.812 -7.617 24.760 hybrid contribution -1.307 -0.203 0.371 1.374 sum 4.579 -23.015 -7.246 24.559 Atomic orbital electron populations 1.21786 0.93900 1.02715 1.02801 1.21983 0.97497 0.93359 1.04890 1.21811 0.91795 0.96659 0.86159 0.87667 1.92922 1.91944 1.83798 1.47965 1.21032 0.90431 0.80636 0.80033 1.90737 1.66023 1.38821 1.43118 1.47725 1.06447 1.37361 1.41347 1.22268 0.96220 0.94923 0.95699 1.22010 0.79070 0.99085 0.98117 1.23847 1.02658 0.95149 0.98088 1.21816 0.89376 0.92970 0.94107 1.45850 1.15109 1.06401 1.70094 1.20336 0.89785 0.81462 0.76594 1.90702 1.36845 1.65509 1.45809 1.23291 0.97527 1.01684 1.05099 1.84784 1.21664 0.95736 1.89088 1.22314 0.96522 0.95952 1.52192 0.89357 1.24709 0.95473 0.97614 0.93458 1.69939 1.20680 1.15741 1.45254 0.86742 0.83974 0.81512 0.79661 1.19211 1.19926 1.15924 1.23611 1.02028 0.94793 0.98383 0.91663 0.91677 0.92219 0.89945 0.89451 0.91479 0.90164 0.88954 0.89303 0.87534 0.89601 0.87662 0.76714 0.88581 0.88424 0.91919 0.89995 0.87608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.83 37.16 0.37 -0.58 16 2 C -0.14 -1.02 5.41 -26.73 -0.14 -1.16 16 3 C 0.07 0.63 3.18 -27.88 -0.09 0.55 16 4 H 0.11 0.61 5.76 -51.93 -0.30 0.32 16 5 F -0.19 -2.09 16.75 2.25 0.04 -2.05 16 6 C 0.49 5.02 6.72 -10.98 -0.07 4.95 16 7 O -0.51 -6.85 15.71 5.55 0.09 -6.77 16 8 N -0.59 -5.03 2.14 -173.00 -0.37 -5.40 16 9 C 0.05 0.34 8.31 59.85 0.50 0.84 16 10 C 0.12 1.01 4.10 -67.11 -0.28 0.73 16 11 C -0.16 -1.29 7.16 -25.92 -0.19 -1.48 16 12 C 0.12 1.33 4.27 -67.12 -0.29 1.04 16 13 N -0.72 -9.08 3.76 -53.02 -0.20 -9.28 16 14 C 0.53 9.08 7.85 -10.99 -0.09 8.99 16 15 O -0.51 -10.62 15.51 5.56 0.09 -10.53 16 16 C -0.13 -2.36 6.16 36.00 0.22 -2.14 16 17 S -0.14 -3.45 18.55 -107.50 -1.99 -5.45 16 18 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 19 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 21 N -0.88 -26.32 13.97 55.49 0.78 -25.55 16 22 Si 0.86 21.54 27.74 -169.99 -4.72 16.83 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 26 C -0.15 -1.40 7.15 -25.92 -0.19 -1.58 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.46 7.94 -51.93 -0.41 0.05 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.47 5.96 -51.93 -0.31 0.16 16 34 H 0.09 0.73 4.62 -51.93 -0.24 0.49 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.73 5.78 -51.93 -0.30 0.43 16 38 H 0.11 1.28 7.56 -51.93 -0.39 0.89 16 39 H 0.40 4.54 6.85 -40.82 -0.28 4.26 16 40 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 41 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.08 0.95 7.33 -51.93 -0.38 0.57 16 44 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -34.98 370.20 -7.15 -42.13 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.41 Total: 2.18 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.03 Total: -1.69 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.21 Total: -40.22 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.98 -7.15 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701921189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.656 kcal (2) G-P(sol) polarization free energy of solvation -34.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds