Wall clock time and date at job start Sat Apr 11 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46704 * 2 1 4 4 H 1.08998 * 109.47094 * 304.99892 * 3 2 1 5 5 F 1.39899 * 109.47134 * 65.00214 * 3 2 1 6 6 C 1.50702 * 109.46686 * 185.00318 * 3 2 1 7 7 O 1.21286 * 119.99931 * 314.99704 * 6 3 2 8 8 N 1.34777 * 120.00065 * 135.00370 * 6 3 2 9 9 C 1.46498 * 119.99798 * 359.97438 * 8 6 3 10 10 C 1.46507 * 119.99732 * 179.97438 * 8 6 3 11 11 C 1.53781 * 113.68630 * 197.45095 * 10 8 6 12 12 C 1.53780 * 87.08198 * 89.12654 * 11 10 8 13 13 N 1.46503 * 113.61576 * 270.88431 * 12 11 10 14 14 C 1.34780 * 119.99972 * 256.33533 * 13 12 11 15 15 O 1.21283 * 119.99495 * 359.97438 * 14 13 12 16 16 C 1.50693 * 119.99997 * 179.97438 * 14 13 12 17 17 S 1.81004 * 109.47144 * 179.97438 * 16 14 13 18 18 C 1.76193 * 100.00055 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00114 * 180.02562 * 18 17 16 21 21 N 1.31634 * 120.00413 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99918 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47231 * 90.00091 * 22 20 18 24 24 H 1.48506 * 109.47166 * 209.99960 * 22 20 18 25 25 H 1.48500 * 109.46762 * 329.99919 * 22 20 18 26 26 C 1.53778 * 87.08076 * 25.43099 * 12 11 10 27 27 H 1.08998 * 109.46982 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46967 * 299.99944 * 1 2 3 29 29 H 1.08999 * 109.47037 * 59.99563 * 1 2 3 30 30 H 1.08996 * 109.46864 * 240.00339 * 2 1 3 31 31 H 1.08999 * 109.47037 * 120.00437 * 2 1 3 32 32 H 1.08999 * 109.47149 * 265.42411 * 9 8 6 33 33 H 1.09002 * 109.46971 * 25.43511 * 9 8 6 34 34 H 1.09006 * 109.46346 * 145.43000 * 9 8 6 35 35 H 1.08995 * 112.84786 * 66.18342 * 10 8 6 36 36 H 1.08999 * 113.61144 * 203.67569 * 11 10 8 37 37 H 1.09001 * 113.61717 * 334.57713 * 11 10 8 38 38 H 1.08998 * 113.68973 * 139.99207 * 12 11 10 39 39 H 0.97001 * 120.00143 * 76.32838 * 13 12 11 40 40 H 1.09001 * 109.47142 * 299.99517 * 16 14 13 41 41 H 1.08997 * 109.47258 * 59.99615 * 16 14 13 42 42 H 0.96998 * 119.99849 * 179.97438 * 21 20 18 43 43 H 1.08998 * 113.61719 * 220.01940 * 26 12 11 44 44 H 1.08999 * 113.61830 * 89.11530 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5419 1.4443 -0.1239 7 8 4.2064 0.6811 0.5446 8 7 4.1466 2.2942 -0.9775 9 6 3.3439 3.2158 -1.7852 10 6 5.6068 2.2962 -1.0975 11 6 6.1703 3.5640 -1.7608 12 6 6.2321 4.1785 -0.3525 13 7 5.0018 4.8698 0.0407 14 6 4.9514 6.2166 0.0260 15 8 5.9247 6.8561 -0.3124 16 6 3.6856 6.9277 0.4299 17 16 3.9329 8.7165 0.3067 18 6 2.3448 9.2810 0.8201 19 1 1.5798 8.5683 1.0906 20 6 2.0770 10.6417 0.8770 21 7 0.8907 11.0636 1.2611 22 14 3.3999 11.8745 0.4085 23 1 3.3093 12.1699 -1.0439 24 1 3.2051 13.1275 1.1815 25 1 4.7371 11.3062 0.7156 26 6 6.3296 2.7410 0.1849 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.1532 2.7711 -2.7619 33 1 2.3962 3.4086 -1.2823 34 1 3.8852 4.1533 -1.9122 35 1 5.9979 1.3712 -1.5208 36 1 7.1494 3.4194 -2.2175 37 1 5.4624 4.0616 -2.4236 38 1 7.1277 4.7734 -0.1731 39 1 4.2234 4.3583 0.3116 40 1 2.8729 6.6266 -0.2312 41 1 3.4339 6.6660 1.4576 42 1 0.7037 12.0145 1.3012 43 1 5.7502 2.5740 1.0930 44 1 7.3522 2.3713 0.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701921189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:38 Heat of formation + Delta-G solvation = -111.406707 kcal Electronic energy + Delta-G solvation = -27070.246623 eV Core-core repulsion = 23063.682968 eV Total energy + Delta-G solvation = -4006.563656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.98496 -42.09825 -40.47913 -39.05556 -35.86182 -34.94224 -34.67000 -34.22551 -30.83985 -28.94027 -28.46538 -27.85720 -26.48474 -25.33085 -23.26253 -22.13251 -21.20965 -20.04104 -19.69159 -18.76050 -18.14136 -17.93673 -17.26766 -17.13335 -17.03225 -16.92671 -16.51323 -16.16898 -15.83616 -15.48467 -15.21111 -14.95751 -14.81215 -14.73032 -14.25286 -13.99053 -13.85841 -13.75818 -13.38162 -13.30086 -13.26501 -13.00661 -12.95317 -12.91366 -12.79200 -12.60459 -12.04606 -11.93685 -11.86662 -11.75228 -11.54830 -11.16563 -11.05392 -10.78608 -10.54616 -10.14223 -9.80305 -8.99629 -8.51025 -6.22068 0.97166 1.21064 1.31787 1.46233 1.48906 1.54469 1.64795 2.15815 2.25570 2.70337 2.87347 3.02591 3.33504 3.44021 3.50781 3.59934 3.70696 3.83323 3.85039 4.02843 4.12217 4.18890 4.37851 4.42607 4.47168 4.48119 4.60664 4.70984 4.71409 4.73389 4.78555 4.86067 4.98529 5.00863 5.03347 5.12490 5.27070 5.33202 5.57939 5.71138 6.07595 6.12194 6.33940 6.83939 6.94043 7.10314 8.61402 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.013720 B = 0.003215 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.373255 B = 8708.428563 C =10288.617645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C 0.070 3.930 4 H 0.137 0.863 5 F -0.204 7.204 6 C 0.490 3.510 7 O -0.552 6.552 8 N -0.590 5.590 9 C 0.045 3.955 10 C 0.121 3.879 11 C -0.141 4.141 12 C 0.108 3.892 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.553 6.553 16 C -0.115 4.115 17 S -0.167 6.167 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.260 1.260 24 H -0.261 1.261 25 H -0.237 1.237 26 C -0.143 4.143 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.406 0.594 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.277 0.723 43 H 0.058 0.942 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -24.748 -9.271 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.175 4.175 3 C 0.031 3.969 4 H 0.154 0.846 5 F -0.185 7.185 6 C 0.277 3.723 7 O -0.429 6.429 8 N -0.323 5.323 9 C -0.097 4.097 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.003 3.997 13 N -0.352 5.352 14 C 0.326 3.674 15 O -0.430 6.430 16 C -0.265 4.265 17 S 0.059 5.941 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.184 1.184 24 H -0.185 1.185 25 H -0.161 1.161 26 C -0.182 4.182 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.242 0.758 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.535 -23.927 -9.413 26.530 hybrid contribution -1.526 -0.031 0.937 1.791 sum 5.009 -23.959 -8.476 25.903 Atomic orbital electron populations 1.21783 0.92929 1.03418 1.02841 1.21975 0.98251 0.92592 1.04648 1.22090 0.90888 0.97689 0.86219 0.84601 1.92882 1.92024 1.84215 1.49400 1.21333 0.91044 0.80289 0.79660 1.90718 1.66925 1.40533 1.44706 1.47809 1.06738 1.36899 1.40870 1.22448 0.96117 0.94273 0.96842 1.22070 0.79037 0.99763 0.97351 1.23804 1.03974 0.93966 0.96222 1.22078 0.87712 0.93186 0.96738 1.45636 1.16176 1.04850 1.68525 1.19915 0.88401 0.82627 0.76448 1.90694 1.37730 1.66553 1.48049 1.23284 0.99554 0.97381 1.06325 1.84668 1.19424 1.01013 1.88954 1.22466 0.97657 0.95860 1.51791 0.92021 1.25558 0.97442 0.99461 0.93447 1.70019 1.22449 1.16570 1.46455 0.85873 0.81188 0.79543 0.79810 1.18426 1.18547 1.16071 1.23625 1.03082 0.93603 0.97848 0.90695 0.93014 0.90748 0.88470 0.91448 0.88871 0.89267 0.89925 0.88120 0.85219 0.89433 0.89018 0.75793 0.86413 0.87692 0.91375 0.92294 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.83 71.98 0.71 -0.93 16 2 C -0.14 -1.83 5.41 30.60 0.17 -1.67 16 3 C 0.07 1.08 3.18 29.85 0.09 1.17 16 4 H 0.14 1.20 5.76 -2.39 -0.01 1.19 16 5 F -0.20 -4.49 16.75 44.97 0.75 -3.74 16 6 C 0.49 9.31 6.72 87.66 0.59 9.90 16 7 O -0.55 -14.49 15.71 -3.05 -0.05 -14.54 16 8 N -0.59 -8.63 2.14 -819.63 -1.75 -10.38 16 9 C 0.04 0.46 8.31 127.77 1.06 1.52 16 10 C 0.12 1.72 4.10 45.52 0.19 1.91 16 11 C -0.14 -1.90 7.16 31.12 0.22 -1.67 16 12 C 0.11 2.15 4.27 45.52 0.19 2.34 16 13 N -0.70 -16.57 3.76 -440.04 -1.65 -18.23 16 14 C 0.54 17.82 7.85 87.65 0.69 18.51 16 15 O -0.55 -22.40 15.51 -3.04 -0.05 -22.45 16 16 C -0.11 -4.21 6.16 71.23 0.44 -3.77 16 17 S -0.17 -8.24 18.55 -56.49 -1.05 -9.29 16 18 C -0.53 -30.44 10.04 67.95 0.68 -29.76 16 19 H 0.06 3.75 8.03 -2.91 -0.02 3.72 16 20 C 0.05 2.69 5.50 84.86 0.47 3.16 16 21 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 22 Si 0.91 44.36 27.74 68.60 1.90 46.26 16 23 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 26 C -0.14 -2.44 7.15 31.12 0.22 -2.22 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 0.70 7.94 -2.38 -0.02 0.68 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.17 8.05 -2.39 -0.02 1.16 16 32 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.09 0.78 5.96 -2.39 -0.01 0.76 16 34 H 0.08 1.07 4.62 -2.38 -0.01 1.06 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.22 5.78 -2.39 -0.01 1.20 16 38 H 0.09 2.14 7.56 -2.39 -0.02 2.12 16 39 H 0.41 8.59 6.85 -92.71 -0.64 7.96 16 40 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 41 H 0.10 3.73 8.14 -2.40 -0.02 3.71 16 42 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.06 1.32 7.33 -2.39 -0.02 1.30 16 44 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -76.87 370.20 4.48 -72.38 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.35 Total: 16.57 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.72 Total: -1.50 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -3.10 Total: -83.69 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.10 Total: -36.99 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.75 Total: -3.74 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.05 Total: -9.29 kcal Total: -76.87 4.48 -72.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701921189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.025 kcal (2) G-P(sol) polarization free energy of solvation -76.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds