Wall clock time and date at job start Sat Apr 11 2020 03:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46780 * 2 1 4 4 H 1.09003 * 109.46783 * 55.00407 * 3 2 1 5 5 F 1.39898 * 109.47108 * 295.00103 * 3 2 1 6 6 C 1.50703 * 109.46929 * 174.99826 * 3 2 1 7 7 O 1.21278 * 119.99953 * 45.00069 * 6 3 2 8 8 N 1.34774 * 120.00114 * 225.00160 * 6 3 2 9 9 C 1.46496 * 119.99906 * 180.02562 * 8 6 3 10 10 H 1.08995 * 110.89094 * 37.42677 * 9 8 6 11 11 C 1.54905 * 111.00243 * 273.54215 * 9 8 6 12 12 N 1.47427 * 104.83458 * 204.88195 * 11 9 8 13 13 C 1.34778 * 125.64870 * 204.09699 * 12 11 9 14 14 O 1.21278 * 119.99748 * 180.02562 * 13 12 11 15 15 C 1.50697 * 120.00209 * 0.02562 * 13 12 11 16 16 S 1.80999 * 109.47181 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99825 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00405 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99855 * 179.72221 * 17 16 15 20 20 N 1.31634 * 119.99756 * 0.27728 * 19 17 16 21 21 Si 1.86803 * 120.00005 * 180.27923 * 19 17 16 22 22 H 1.48496 * 109.47187 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 119.99999 * 21 19 17 24 24 H 1.48498 * 109.47018 * 240.00046 * 21 19 17 25 25 C 1.47028 * 108.70223 * 24.35487 * 12 11 9 26 26 C 1.54333 * 107.26281 * 358.59036 * 25 12 11 27 27 H 1.08997 * 110.51825 * 96.45501 * 26 25 12 28 28 C 1.53003 * 110.99974 * 219.60024 * 26 25 12 29 29 H 1.08992 * 109.47452 * 60.00033 * 1 2 3 30 30 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47346 * 299.99783 * 1 2 3 32 32 H 1.09000 * 109.47346 * 240.00217 * 2 1 3 33 33 H 1.08998 * 109.47139 * 119.99641 * 2 1 3 34 34 H 0.96999 * 119.99961 * 359.97438 * 8 6 3 35 35 H 1.08999 * 110.36854 * 86.04495 * 11 9 8 36 36 H 1.09007 * 110.37095 * 323.71665 * 11 9 8 37 37 H 1.08999 * 109.47278 * 59.99800 * 15 13 12 38 38 H 1.09002 * 109.46837 * 300.00183 * 15 13 12 39 39 H 0.97000 * 119.99219 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.87909 * 118.13301 * 25 12 11 41 41 H 1.09002 * 109.87892 * 239.29904 * 25 12 11 42 42 H 1.09003 * 109.47245 * 173.78183 * 28 26 25 43 43 H 1.09001 * 109.46911 * 293.78333 * 28 26 25 44 44 H 1.09003 * 109.46852 * 53.78236 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 9 1.6698 2.0680 -1.1954 6 6 3.5418 1.4444 0.1239 7 8 4.2063 0.6812 -0.5446 8 7 4.1466 2.2942 0.9775 9 6 5.6066 2.2963 1.0975 10 1 6.0765 2.1337 0.1275 11 6 6.0805 1.2414 2.1280 12 7 7.3879 1.7341 2.5986 13 6 8.3695 0.9761 3.1262 14 8 9.4085 1.4908 3.4816 15 6 8.1760 -0.5111 3.2744 16 16 9.6599 -1.2423 4.0089 17 6 9.1711 -2.9342 4.0658 18 1 8.1972 -3.2275 3.7028 19 6 10.0403 -3.8910 4.5713 20 7 11.2277 -3.5336 5.0133 21 14 9.5252 -5.6858 4.6245 22 1 8.1532 -5.8236 4.0733 23 1 10.4688 -6.4959 3.8130 24 1 9.5438 -6.1647 6.0300 25 6 7.4412 3.1903 2.4027 26 6 6.1102 3.6130 1.7456 27 1 5.4067 3.9653 2.4999 28 6 6.3414 4.6868 0.6804 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6151 2.9048 1.5118 35 1 6.1916 0.2678 1.6506 36 1 5.3772 1.1795 2.9585 37 1 7.9993 -0.9540 2.2942 38 1 7.3190 -0.7034 3.9198 39 1 11.8349 -4.2023 5.3669 40 1 7.5570 3.6896 3.3646 41 1 8.2738 3.4459 1.7473 42 1 5.4062 4.8871 0.1575 43 1 6.6942 5.6014 1.1571 44 1 7.0884 4.3368 -0.0321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001702275500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:43 Heat of formation + Delta-G solvation = -129.492036 kcal Electronic energy + Delta-G solvation = -26167.216509 eV Core-core repulsion = 22159.868615 eV Total energy + Delta-G solvation = -4007.347894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.32390 -40.64637 -39.42661 -37.60787 -34.57842 -34.42013 -32.93710 -32.42534 -29.55912 -29.49752 -27.60671 -26.21177 -25.41391 -23.64703 -22.25286 -21.22382 -20.68903 -19.46839 -18.15782 -17.77649 -17.41211 -16.86848 -16.58101 -16.07794 -15.41613 -15.25771 -14.93707 -14.80191 -14.67639 -14.30633 -14.10777 -13.97850 -13.70599 -13.52822 -13.36122 -13.11424 -12.76971 -12.70423 -12.44366 -12.38809 -12.35298 -11.88465 -11.66390 -11.57304 -11.51730 -11.35373 -11.07321 -11.04665 -11.00849 -10.75177 -10.21512 -9.81787 -9.72137 -9.40216 -9.07081 -8.58674 -8.23697 -6.50464 -6.21595 -3.92226 1.95884 2.33980 2.90483 3.02223 3.22141 3.26665 3.31885 3.59551 3.84283 3.94174 4.08413 4.13285 4.20148 4.23089 4.40366 4.44568 4.81276 4.85492 4.94898 4.95688 4.99126 5.01236 5.13755 5.17714 5.35062 5.40732 5.46456 5.47953 5.54466 5.58494 5.62394 5.66107 5.70820 5.75144 5.81021 5.90279 5.98316 6.13581 6.33564 6.86318 7.56663 7.59851 7.60755 8.35956 8.50183 9.23953 10.85954 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.010970 B = 0.002890 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.762827 B = 9687.014582 C =11972.677051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.143 4.143 3 C 0.085 3.915 4 H 0.101 0.899 5 F -0.189 7.189 6 C 0.492 3.508 7 O -0.509 6.509 8 N -0.711 5.711 9 C 0.134 3.866 10 H 0.109 0.891 11 C 0.092 3.908 12 N -0.625 5.625 13 C 0.550 3.450 14 O -0.512 6.512 15 C -0.148 4.148 16 S -0.060 6.060 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.115 3.885 26 C -0.108 4.108 27 H 0.091 0.909 28 C -0.143 4.143 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.405 0.595 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.064 0.936 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.661 15.690 -8.734 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.046 3.954 4 H 0.118 0.882 5 F -0.170 7.170 6 C 0.275 3.725 7 O -0.382 6.382 8 N -0.364 5.364 9 C 0.029 3.971 10 H 0.127 0.873 11 C -0.033 4.033 12 N -0.363 5.363 13 C 0.339 3.661 14 O -0.386 6.386 15 C -0.298 4.298 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.009 4.009 26 C -0.127 4.127 27 H 0.109 0.891 28 C -0.200 4.200 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.240 0.760 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.375 15.794 -8.614 27.180 hybrid contribution -1.843 -1.397 -0.106 2.315 sum -22.217 14.397 -8.720 27.873 Atomic orbital electron populations 1.21773 0.94010 1.02869 1.02432 1.22022 0.97401 0.93285 1.05429 1.21631 0.91591 0.96608 0.85602 0.88164 1.92893 1.91993 1.83869 1.48270 1.21065 0.90506 0.80800 0.80101 1.90795 1.65944 1.38288 1.43201 1.45914 1.07347 1.39760 1.43379 1.22263 0.79716 0.94960 1.00200 0.87332 1.22617 0.85276 0.98708 0.96703 1.48386 1.16043 1.07527 1.64364 1.20046 0.81816 0.88348 0.75873 1.90714 1.26027 1.74011 1.47809 1.23521 1.07646 0.93301 1.05336 1.85381 1.14353 1.04315 1.79313 1.22899 1.04625 0.92312 1.48378 0.90868 1.24998 0.94495 0.99528 0.94576 1.70032 1.06952 1.34431 1.38881 0.86109 0.78691 0.82717 0.77949 1.19595 1.20525 1.20559 1.21923 0.96636 0.81493 1.00803 1.22506 0.97397 0.94628 0.98215 0.89082 1.21776 1.02345 0.97946 0.97972 0.91938 0.91533 0.92317 0.89255 0.89495 0.76011 0.89565 0.91062 0.89184 0.89323 0.92232 0.90978 0.90885 0.92012 0.91673 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.83 37.16 0.37 -0.42 16 2 C -0.14 -0.95 5.41 -26.73 -0.14 -1.10 16 3 C 0.09 0.56 3.77 -27.88 -0.11 0.45 16 4 H 0.10 0.30 8.00 -51.93 -0.42 -0.12 16 5 F -0.19 -1.68 16.75 2.25 0.04 -1.64 16 6 C 0.49 4.44 7.17 -10.99 -0.08 4.36 16 7 O -0.51 -6.91 16.35 5.56 0.09 -6.82 16 8 N -0.71 -4.68 5.23 -51.73 -0.27 -4.95 16 9 C 0.13 1.18 2.76 -65.78 -0.18 0.99 16 10 H 0.11 1.17 7.64 -51.93 -0.40 0.77 16 11 C 0.09 1.04 6.38 -2.53 -0.02 1.02 16 12 N -0.63 -8.96 3.33 -170.51 -0.57 -9.53 16 13 C 0.55 10.76 7.87 -10.99 -0.09 10.68 16 14 O -0.51 -11.93 16.19 5.56 0.09 -11.84 16 15 C -0.15 -3.10 5.16 36.00 0.19 -2.92 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 17 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 18 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.36 13.22 55.49 0.73 -25.62 16 21 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.11 1.27 6.48 -3.06 -0.02 1.25 16 26 C -0.11 -0.77 3.15 -88.78 -0.28 -1.05 16 27 H 0.09 0.47 8.00 -51.93 -0.42 0.06 16 28 C -0.14 -0.87 9.17 37.16 0.34 -0.52 16 29 H 0.06 0.34 7.93 -51.93 -0.41 -0.07 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.30 8.41 -40.82 -0.34 0.95 16 35 H 0.09 1.11 7.48 -51.93 -0.39 0.72 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 1.80 7.85 -51.92 -0.41 1.40 16 38 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.86 7.78 -51.93 -0.40 0.45 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -37.14 385.12 -8.09 -45.22 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -6.95 Total: -2.99 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 0.18 Total: -0.35 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: -0.10 Total: -40.11 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.18 Total: -18.66 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.14 -8.09 -45.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001702275500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.270 kcal (2) G-P(sol) polarization free energy of solvation -37.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds