Wall clock time and date at job start Sat Apr 11 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47268 * 2 1 4 4 F 1.39898 * 109.46785 * 240.00129 * 2 1 3 5 5 C 1.50702 * 109.47276 * 120.00175 * 2 1 3 6 6 O 1.21276 * 119.99993 * 347.04555 * 5 2 1 7 7 N 1.34771 * 119.99783 * 167.04333 * 5 2 1 8 8 C 1.43525 * 119.01147 * 185.14721 * 7 5 2 9 9 C 1.53800 * 107.93315 * 273.72450 * 8 7 5 10 10 C 1.47141 * 111.77999 * 281.55865 * 9 8 7 11 11 N 1.48211 * 110.34033 * 58.33250 * 10 9 8 12 12 C 1.34783 * 119.97070 * 102.46616 * 11 10 9 13 13 O 1.21279 * 119.99653 * 354.64427 * 12 11 10 14 14 C 1.50693 * 119.99921 * 174.64649 * 12 11 10 15 15 S 1.81001 * 109.47160 * 184.46363 * 14 12 11 16 16 C 1.76195 * 100.00116 * 179.97438 * 15 14 12 17 17 H 1.07990 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.38798 * 119.99820 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00133 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 120.00286 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.46926 * 89.99919 * 20 18 16 22 22 H 1.48495 * 109.47066 * 209.99899 * 20 18 16 23 23 H 1.48505 * 109.46753 * 330.00109 * 20 18 16 24 24 C 1.43619 * 120.05898 * 282.48197 * 11 10 9 25 25 C 1.48865 * 118.94427 * 5.14555 * 7 5 2 26 26 H 1.09004 * 109.47143 * 299.99713 * 1 2 3 27 27 H 1.09000 * 109.47447 * 59.99547 * 1 2 3 28 28 H 1.09000 * 109.47291 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46961 * 170.85318 * 3 2 1 30 30 H 1.08996 * 109.47105 * 290.84925 * 3 2 1 31 31 H 1.09000 * 109.46730 * 50.85162 * 3 2 1 32 32 H 1.08997 * 109.83874 * 154.08483 * 8 7 5 33 33 H 1.08999 * 109.71574 * 33.29558 * 8 7 5 34 34 H 1.09008 * 109.00846 * 160.99255 * 9 8 7 35 35 H 1.08997 * 109.00712 * 42.13025 * 9 8 7 36 36 H 1.08997 * 109.32719 * 178.59992 * 10 9 8 37 37 H 1.09000 * 109.32528 * 298.07088 * 10 9 8 38 38 H 1.08999 * 109.47361 * 304.46326 * 14 12 11 39 39 H 1.09006 * 109.47470 * 64.46691 * 14 12 11 40 40 H 0.97002 * 120.00411 * 179.97438 * 19 18 16 41 41 H 1.09002 * 108.87753 * 211.45099 * 24 11 10 42 42 H 1.08996 * 108.88056 * 329.99276 * 24 11 10 43 43 H 1.09000 * 109.47418 * 20.63558 * 25 7 5 44 44 H 1.08992 * 109.47683 * 260.60220 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9962 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2304 6 8 1.2695 -0.9630 2.1388 7 7 3.3294 -1.0651 1.3214 8 6 3.7621 -1.8381 2.4506 9 6 4.1012 -0.8626 3.5903 10 6 5.4181 -0.2349 3.3979 11 7 5.4585 0.4923 2.1071 12 6 5.3411 1.8348 2.0867 13 8 5.1055 2.4386 3.1118 14 6 5.5026 2.5856 0.7901 15 16 5.4212 4.3654 1.1094 16 6 5.6330 4.9801 -0.5283 17 1 5.7600 4.2922 -1.3510 18 6 5.6366 6.3484 -0.7609 19 7 5.7943 6.8076 -1.9844 20 14 5.4176 7.5384 0.6623 21 1 6.7464 7.8823 1.2289 22 1 4.7518 8.7737 0.1767 23 1 4.5804 6.9051 1.7127 24 6 5.6223 -0.2324 0.8780 25 6 4.2688 -0.6426 0.2467 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1176 1.4468 0.1634 30 1 1.8163 1.9070 -0.9603 31 1 1.5494 2.0013 0.7970 32 1 4.6468 -2.4170 2.1855 33 1 2.9626 -2.5088 2.7652 34 1 4.1019 -1.4067 4.5349 35 1 3.3393 -0.0842 3.6298 36 1 5.6066 0.4647 4.2122 37 1 6.1890 -1.0054 3.4021 38 1 6.4671 2.3400 0.3457 39 1 4.7039 2.3027 0.1044 40 1 5.7964 7.7639 -2.1470 41 1 6.1665 0.3927 0.1699 42 1 6.2054 -1.1321 1.0740 43 1 3.8469 0.2058 -0.2920 44 1 4.4262 -1.4705 -0.4446 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703475976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:46 Heat of formation + Delta-G solvation = -101.416924 kcal Electronic energy + Delta-G solvation = -28518.231513 eV Core-core repulsion = 24512.101047 eV Total energy + Delta-G solvation = -4006.130466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.13489 -40.85726 -39.44984 -37.15588 -34.61781 -34.39426 -33.19247 -32.48921 -29.62109 -28.65698 -27.91141 -26.53161 -25.65124 -24.06470 -22.99533 -21.66557 -19.50114 -19.18354 -18.06303 -17.62170 -16.97794 -16.80852 -16.06861 -15.98971 -15.84442 -15.11042 -15.01797 -14.86609 -14.76713 -14.15208 -13.87895 -13.76645 -13.55693 -13.34096 -13.03206 -12.89221 -12.79488 -12.59342 -12.49060 -12.30368 -12.21363 -12.02886 -12.00374 -11.54131 -11.44786 -11.31440 -11.14554 -11.05414 -10.89579 -10.64213 -9.90854 -9.85805 -9.57489 -9.05877 -8.99806 -8.68876 -8.54523 -6.98762 -6.33895 -4.06512 2.23589 2.53146 2.70778 2.80410 3.13718 3.29111 3.46351 3.52490 3.84541 4.27973 4.28489 4.37777 4.41242 4.52537 4.59319 4.62168 4.68639 4.83053 5.01196 5.05071 5.07234 5.16128 5.21332 5.26037 5.38405 5.39667 5.46025 5.47625 5.49950 5.59531 5.67386 5.75187 5.81818 5.84707 5.89040 6.05367 6.10274 6.34631 6.49612 6.95420 7.37504 7.81621 7.88892 8.33002 8.36108 9.12342 10.75128 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.013767 B = 0.004341 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.398949 B = 6449.151476 C = 7470.773232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.102 3.898 3 C -0.184 4.184 4 F -0.196 7.196 5 C 0.501 3.499 6 O -0.523 6.523 7 N -0.594 5.594 8 C 0.121 3.879 9 C -0.157 4.157 10 C 0.120 3.880 11 N -0.610 5.610 12 C 0.531 3.469 13 O -0.512 6.512 14 C -0.127 4.127 15 S -0.139 6.139 16 C -0.522 4.522 17 H 0.089 0.911 18 C 0.098 3.902 19 N -0.879 5.879 20 Si 0.854 3.146 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.095 3.905 25 C 0.071 3.929 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.271 0.729 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.706 -19.655 4.259 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.080 3.920 3 C -0.241 4.241 4 F -0.176 7.176 5 C 0.287 3.713 6 O -0.399 6.399 7 N -0.327 5.327 8 C -0.003 4.003 9 C -0.197 4.197 10 C -0.002 4.002 11 N -0.345 5.345 12 C 0.318 3.682 13 O -0.386 6.386 14 C -0.277 4.277 15 S 0.087 5.913 16 C -0.670 4.670 17 H 0.107 0.893 18 C -0.111 4.111 19 N -0.515 5.515 20 Si 0.679 3.321 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.031 4.031 25 C -0.052 4.052 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.118 0.882 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.322 -18.760 6.148 20.210 hybrid contribution 0.306 -0.113 -1.092 1.140 sum -4.016 -18.873 5.056 19.947 Atomic orbital electron populations 1.22156 0.90769 1.04120 1.04328 1.21192 0.96949 0.93329 0.80491 1.22703 1.03195 0.92404 1.05809 1.92895 1.90162 1.82701 1.51877 1.20892 0.82377 0.79274 0.88773 1.90705 1.55646 1.53706 1.39837 1.47681 1.07991 1.53279 1.23700 1.21107 1.00517 0.93278 0.85360 1.21514 0.98958 1.00137 0.99045 1.20649 0.96878 0.96251 0.86413 1.47549 1.74375 1.05983 1.06639 1.20357 0.75602 0.81362 0.90854 1.90698 1.45894 1.67211 1.34768 1.23432 1.05355 1.01480 0.97414 1.84865 1.95725 0.95489 1.15221 1.22286 1.57723 0.95680 0.91274 0.89332 1.24685 0.93186 0.97444 0.95777 1.69931 1.47418 1.14600 1.19546 0.86775 0.80309 0.81532 0.83490 1.19207 1.19896 1.15942 1.21642 0.95872 0.98145 0.87482 1.23512 0.90442 1.01866 0.89422 0.89658 0.90407 0.91121 0.90274 0.89137 0.89450 0.90210 0.89842 0.90039 0.90696 0.89042 0.91079 0.88465 0.88717 0.91898 0.88544 0.89996 0.88162 0.89524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.30 37.16 0.31 -1.36 16 2 C 0.10 1.22 1.20 -91.77 -0.11 1.11 16 3 C -0.18 -2.32 8.46 37.16 0.31 -2.00 16 4 F -0.20 -2.33 14.85 2.25 0.03 -2.30 16 5 C 0.50 6.65 6.43 -10.99 -0.07 6.57 16 6 O -0.52 -8.23 15.45 5.56 0.09 -8.14 16 7 N -0.59 -6.55 2.51 -172.39 -0.43 -6.98 16 8 C 0.12 1.13 5.30 -5.20 -0.03 1.10 16 9 C -0.16 -1.63 5.63 -29.13 -0.16 -1.79 16 10 C 0.12 1.27 5.66 -5.91 -0.03 1.23 16 11 N -0.61 -7.52 2.46 -176.66 -0.43 -7.95 16 12 C 0.53 9.04 7.67 -10.99 -0.08 8.95 16 13 O -0.51 -10.72 15.35 5.56 0.09 -10.63 16 14 C -0.13 -2.30 4.70 36.00 0.17 -2.13 16 15 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 16 C -0.52 -14.40 10.04 30.94 0.31 -14.09 16 17 H 0.09 2.53 8.03 -52.49 -0.42 2.11 16 18 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 19 N -0.88 -25.77 13.97 55.49 0.78 -24.99 16 20 Si 0.85 21.26 27.74 -169.99 -4.72 16.55 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 24 C 0.09 0.85 5.14 -4.58 -0.02 0.83 16 25 C 0.07 0.66 5.22 -1.74 -0.01 0.66 16 26 H 0.08 0.94 7.96 -51.93 -0.41 0.52 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.06 3.30 -51.93 -0.17 0.89 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 32 H 0.08 0.54 7.58 -51.93 -0.39 0.15 16 33 H 0.08 0.84 7.49 -51.93 -0.39 0.45 16 34 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.07 1.07 7.80 -51.93 -0.40 0.67 16 36 H 0.09 1.15 7.19 -51.93 -0.37 0.77 16 37 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 38 H 0.10 1.62 7.32 -51.92 -0.38 1.24 16 39 H 0.09 1.59 5.69 -51.91 -0.30 1.29 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.10 0.85 6.25 -51.93 -0.32 0.53 16 42 H 0.08 0.52 7.72 -51.93 -0.40 0.12 16 43 H 0.10 1.07 3.39 -51.93 -0.18 0.90 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -34.26 355.97 -7.00 -41.26 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.25 Total: 1.44 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 0.48 Total: 1.77 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.09 Total: -39.92 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.78 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.03 Total: -2.30 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.72 Total: 16.55 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.26 -7.00 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703475976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.158 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds