Wall clock time and date at job start Sat Apr 11 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46861 * 2 1 4 4 F 1.39904 * 109.46914 * 240.00547 * 2 1 3 5 5 C 1.50695 * 109.47602 * 120.00157 * 2 1 3 6 6 O 1.21286 * 119.99705 * 253.30451 * 5 2 1 7 7 N 1.34777 * 119.99902 * 73.29573 * 5 2 1 8 8 C 1.47727 * 125.81998 * 4.84200 * 7 5 2 9 9 C 1.54908 * 104.90485 * 204.09761 * 8 7 5 10 10 C 1.55159 * 101.58115 * 323.04607 * 9 8 7 11 11 C 1.47026 * 125.64630 * 184.94520 * 7 5 2 12 12 H 1.09005 * 109.87910 * 59.48707 * 11 7 5 13 13 C 1.52999 * 109.88123 * 298.47533 * 11 7 5 14 14 N 1.46507 * 109.46863 * 75.42617 * 13 11 7 15 15 C 1.34777 * 119.99518 * 187.25224 * 14 13 11 16 16 O 1.21278 * 120.00215 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99911 * 180.02562 * 15 14 13 18 18 S 1.80999 * 109.47328 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99891 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00199 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99716 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99839 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99648 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46973 * 59.99880 * 23 21 19 25 25 H 1.48499 * 109.46820 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47081 * 299.99599 * 23 21 19 27 27 H 1.09000 * 109.46889 * 305.37932 * 1 2 3 28 28 H 1.08998 * 109.47245 * 65.38394 * 1 2 3 29 29 H 1.09003 * 109.46518 * 185.38091 * 1 2 3 30 30 H 1.09001 * 109.47091 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47338 * 300.00435 * 3 2 1 32 32 H 1.08996 * 109.47071 * 60.00090 * 3 2 1 33 33 H 1.09008 * 110.29144 * 85.25868 * 8 7 5 34 34 H 1.09008 * 110.47580 * 323.02963 * 8 7 5 35 35 H 1.09001 * 111.00776 * 204.97578 * 9 8 7 36 36 H 1.09003 * 111.04107 * 81.13243 * 9 8 7 37 37 H 1.09008 * 110.72107 * 277.14269 * 10 9 8 38 38 H 1.08991 * 110.87844 * 153.93577 * 10 9 8 39 39 H 1.09004 * 109.46893 * 195.42163 * 13 11 7 40 40 H 1.08995 * 109.47146 * 315.42594 * 13 11 7 41 41 H 0.96996 * 119.99891 * 7.24937 * 14 13 11 42 42 H 1.09001 * 109.47077 * 299.99717 * 17 15 14 43 43 H 1.09000 * 109.46960 * 59.99375 * 17 15 14 44 44 H 0.97002 * 119.99562 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6594 -1.1424 5 6 2.0325 -0.7104 1.2304 6 8 2.5192 -0.0746 2.1414 7 7 1.9409 -2.0522 1.3184 8 6 1.4670 -2.9582 0.2522 9 6 0.9692 -4.2226 0.9958 10 6 2.0038 -4.3348 2.1466 11 6 2.2946 -2.8598 2.4950 12 1 1.6903 -2.5546 3.3493 13 6 3.7796 -2.6845 2.8190 14 7 3.9909 -1.3795 3.4503 15 6 5.2428 -0.9427 3.6918 16 8 6.1944 -1.6301 3.3870 17 6 5.4603 0.3995 4.3418 18 16 7.2355 0.6978 4.5309 19 6 7.1994 2.2866 5.2918 20 1 6.2536 2.7659 5.4967 21 6 8.3868 2.9227 5.6271 22 7 9.5396 2.3387 5.3770 23 14 8.3484 4.6067 6.4344 24 1 7.6110 4.5224 7.7206 25 1 9.7377 5.0648 6.6900 26 1 7.6663 5.5715 5.5350 27 1 -0.3633 0.5950 0.8379 28 1 -0.3634 0.4280 -0.9342 29 1 -0.3632 -1.0232 0.0964 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.2866 -3.2117 -0.4204 34 1 0.6497 -2.4985 -0.3036 35 1 1.0092 -5.0982 0.3478 36 1 -0.0370 -4.0752 1.3881 37 1 2.9093 -4.8357 1.8037 38 1 1.5771 -4.8565 3.0031 39 1 4.0984 -3.4736 3.5002 40 1 4.3614 -2.7416 1.8991 41 1 3.2299 -0.8299 3.6944 42 1 5.0248 1.1801 3.7180 43 1 4.9840 0.4099 5.3221 44 1 10.3693 2.7833 5.6109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704323668.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:50 Heat of formation + Delta-G solvation = -112.288103 kcal Electronic energy + Delta-G solvation = -27275.364532 eV Core-core repulsion = 23268.762656 eV Total energy + Delta-G solvation = -4006.601876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.23817 -40.70591 -38.69392 -37.98186 -34.56140 -33.70106 -32.33252 -32.03581 -30.69798 -28.67794 -27.83394 -25.60934 -25.31158 -24.47895 -22.34297 -21.23948 -20.07777 -19.45955 -18.10270 -17.50856 -17.19293 -16.41452 -16.10726 -15.91052 -15.53272 -15.10876 -14.91591 -14.71924 -14.55413 -14.04277 -13.88076 -13.73370 -13.49856 -13.19502 -12.98666 -12.90228 -12.73516 -12.70701 -12.50542 -12.39072 -12.28512 -12.11058 -11.75580 -11.67303 -11.50143 -11.25846 -11.17713 -10.96612 -10.94161 -10.68015 -9.98400 -9.71230 -9.15669 -9.09623 -8.96718 -8.49563 -8.10086 -6.37367 -6.11969 -3.80886 2.12952 2.42208 3.19908 3.29706 3.33464 3.36578 3.42716 3.71622 3.87501 3.99738 4.07820 4.19922 4.30580 4.36655 4.39988 4.49385 4.65525 4.85376 4.95526 5.02047 5.10806 5.20639 5.22597 5.25890 5.34019 5.34847 5.40957 5.41470 5.47377 5.54106 5.62720 5.67499 5.80765 5.88295 5.98112 6.00879 6.12518 6.37892 6.90691 7.05345 7.66798 7.69119 8.14512 8.45245 8.91854 9.32987 10.95528 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.003020 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.372046 B = 9269.277752 C =10427.591998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.109 3.891 3 C -0.161 4.161 4 F -0.196 7.196 5 C 0.516 3.484 6 O -0.503 6.503 7 N -0.609 5.609 8 C 0.096 3.904 9 C -0.133 4.133 10 C -0.124 4.124 11 C 0.124 3.876 12 H 0.084 0.916 13 C 0.114 3.886 14 N -0.723 5.723 15 C 0.533 3.467 16 O -0.532 6.532 17 C -0.146 4.146 18 S -0.064 6.064 19 C -0.533 4.533 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.407 0.593 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.508 -11.770 -12.268 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.087 3.913 3 C -0.218 4.218 4 F -0.176 7.176 5 C 0.302 3.698 6 O -0.377 6.377 7 N -0.344 5.344 8 C -0.027 4.027 9 C -0.171 4.171 10 C -0.163 4.163 11 C 0.021 3.979 12 H 0.102 0.898 13 C -0.012 4.012 14 N -0.384 5.384 15 C 0.319 3.681 16 O -0.409 6.409 17 C -0.297 4.297 18 S 0.162 5.838 19 C -0.681 4.681 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.249 0.751 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.466 -12.462 -12.299 29.278 hybrid contribution -1.420 2.020 0.784 2.591 sum -24.886 -10.441 -11.515 29.342 Atomic orbital electron populations 1.22434 0.91540 1.04096 1.04910 1.21142 0.96157 0.93616 0.80337 1.22212 1.03714 0.91790 1.04128 1.92912 1.90299 1.82603 1.51802 1.20527 0.78936 0.81047 0.89243 1.90572 1.42476 1.64821 1.39858 1.48636 1.64891 1.05120 1.15738 1.22587 0.99707 0.90036 0.90344 1.22799 0.99172 0.97613 0.97499 1.22643 1.00279 0.93855 0.99488 1.21982 0.95817 0.91322 0.88801 0.89804 1.21591 0.93966 0.86952 0.98697 1.46320 1.09010 1.19719 1.63341 1.20228 0.82386 0.87524 0.77997 1.90664 1.41123 1.57433 1.51635 1.23460 1.07281 0.96382 1.02585 1.85307 0.95261 1.23532 1.79661 1.22851 0.95371 1.03964 1.45915 0.91063 1.24983 0.94566 0.98482 0.95592 1.70021 0.97361 1.38030 1.45061 0.86238 0.77262 0.82475 0.79599 1.19983 1.20867 1.19976 0.89795 0.89877 0.90934 0.90391 0.90615 0.89436 0.90536 0.90063 0.89333 0.90411 0.89658 0.89308 0.91028 0.91332 0.75099 0.89221 0.89692 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 8.72 37.16 0.32 -0.71 16 2 C 0.11 1.02 1.20 -91.77 -0.11 0.91 16 3 C -0.16 -1.56 8.32 37.16 0.31 -1.25 16 4 F -0.20 -2.02 15.05 2.25 0.03 -1.99 16 5 C 0.52 5.97 6.69 -10.99 -0.07 5.90 16 6 O -0.50 -7.34 12.13 5.55 0.07 -7.27 16 7 N -0.61 -5.75 3.08 -162.76 -0.50 -6.25 16 8 C 0.10 0.62 5.62 -2.36 -0.01 0.61 16 9 C -0.13 -0.57 7.09 -24.58 -0.17 -0.75 16 10 C -0.12 -0.71 6.44 -24.89 -0.16 -0.87 16 11 C 0.12 1.13 3.08 -66.95 -0.21 0.92 16 12 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 13 C 0.11 1.50 5.05 -4.04 -0.02 1.48 16 14 N -0.72 -11.96 4.03 -60.29 -0.24 -12.20 16 15 C 0.53 11.49 7.85 -10.98 -0.09 11.41 16 16 O -0.53 -13.38 15.83 5.56 0.09 -13.29 16 17 C -0.15 -3.38 6.16 36.01 0.22 -3.15 16 18 S -0.06 -1.87 20.57 -107.50 -2.21 -4.08 16 19 C -0.53 -16.02 9.50 30.94 0.29 -15.73 16 20 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 21 C 0.07 2.16 5.49 -17.43 -0.10 2.07 16 22 N -0.87 -27.19 13.22 55.49 0.73 -26.46 16 23 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.37 6.17 -51.93 -0.32 0.05 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.84 7.96 -51.93 -0.41 0.42 16 33 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 34 H 0.08 0.44 5.40 -51.92 -0.28 0.16 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.50 7.85 -51.92 -0.41 0.09 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 40 H 0.07 1.05 8.10 -51.93 -0.42 0.62 16 41 H 0.41 6.30 5.91 -40.82 -0.24 6.05 16 42 H 0.09 2.01 8.14 -51.92 -0.42 1.59 16 43 H 0.08 1.83 8.14 -51.92 -0.42 1.40 16 44 H 0.27 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -37.68 371.10 -7.95 -45.63 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.70 Total: 2.27 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 0.21 Total: 0.83 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.01 Total: -44.91 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.16 Total: -20.57 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: -1.87 SS G_CDS: -2.21 Total: -4.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.68 -7.95 -45.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704323668.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.659 kcal (2) G-P(sol) polarization free energy of solvation -37.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds