Wall clock time and date at job start Sat Apr 11 2020 03:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 C 1.52997 * 109.47344 * 119.99970 * 2 1 3 5 5 H 1.09007 * 109.47357 * 185.00148 * 4 2 1 6 6 F 1.39900 * 109.47009 * 305.00002 * 4 2 1 7 7 C 1.50699 * 109.47009 * 65.00169 * 4 2 1 8 8 O 1.21282 * 120.00049 * 314.99598 * 7 4 2 9 9 N 1.34775 * 119.99946 * 135.00499 * 7 4 2 10 10 C 1.47585 * 134.49073 * 179.97438 * 9 7 4 11 11 C 1.53947 * 86.11441 * 155.35639 * 10 9 7 12 12 C 1.53006 * 113.73862 * 137.95352 * 11 10 9 13 13 N 1.46498 * 109.46726 * 174.99929 * 12 11 10 14 14 C 1.34779 * 120.00066 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99486 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00253 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.46942 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99912 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00210 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00012 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99899 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46830 * 90.00204 * 22 20 18 24 24 H 1.48499 * 109.47200 * 209.99955 * 22 20 18 25 25 H 1.48504 * 109.47057 * 330.00357 * 22 20 18 26 26 C 1.47577 * 134.49642 * 359.97438 * 9 7 4 27 27 H 1.08996 * 109.47336 * 299.99682 * 1 2 3 28 28 H 1.08997 * 109.47009 * 60.00252 * 1 2 3 29 29 H 1.09005 * 109.47218 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47132 * 240.00190 * 2 1 3 31 31 H 1.08992 * 109.47377 * 59.99663 * 3 2 1 32 32 H 1.09001 * 109.47359 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47004 * 299.99979 * 3 2 1 34 34 H 1.09000 * 113.77328 * 41.05587 * 10 9 7 35 35 H 1.09001 * 113.76777 * 269.65985 * 10 9 7 36 36 H 1.08995 * 113.74302 * 269.15000 * 11 10 9 37 37 H 1.08995 * 109.46794 * 294.99903 * 12 11 10 38 38 H 1.09000 * 109.47314 * 55.00037 * 12 11 10 39 39 H 0.96998 * 120.00310 * 359.97438 * 13 12 11 40 40 H 1.08998 * 109.47296 * 300.00322 * 16 14 13 41 41 H 1.09000 * 109.46862 * 60.00188 * 16 14 13 42 42 H 0.97003 * 119.99690 * 179.97438 * 21 20 18 43 43 H 1.09003 * 113.76916 * 90.33827 * 26 9 7 44 44 H 1.09004 * 113.76688 * 318.94990 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1264 -0.6443 1.2951 6 9 1.4822 -0.1314 2.3886 7 6 1.6414 -2.1733 1.1888 8 8 0.5143 -2.4796 0.8622 9 7 2.5373 -3.1314 1.4980 10 6 2.4991 -4.6060 1.5476 11 6 4.0226 -4.5482 1.3341 12 6 4.8042 -5.5361 2.2027 13 7 6.2230 -5.4875 1.8414 14 6 7.1086 -6.2778 2.4800 15 8 6.7306 -7.0295 3.3535 16 6 8.5681 -6.2282 2.1080 17 16 9.4926 -7.3967 3.1355 18 6 11.1181 -7.1371 2.5071 19 1 11.2832 -6.4203 1.7163 20 6 12.1864 -7.8536 3.0284 21 7 13.4008 -7.6593 2.5593 22 14 11.9010 -9.0928 4.3968 23 1 11.6168 -10.4254 3.8063 24 1 13.1142 -9.1775 5.2489 25 1 10.7450 -8.6607 5.2227 26 6 3.9506 -3.1277 1.9230 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.9562 -5.0596 0.7184 35 1 2.2063 -5.0054 2.5186 36 1 4.3203 -4.5762 0.2860 37 1 4.6872 -5.2682 3.2527 38 1 4.4222 -6.5440 2.0401 39 1 6.5253 -4.8865 1.1425 40 1 8.6848 -6.4968 1.0581 41 1 8.9502 -5.2202 2.2697 42 1 14.1475 -8.1598 2.9239 43 1 4.0842 -3.0929 3.0042 44 1 4.5666 -2.4008 1.3935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704562373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:55 Heat of formation + Delta-G solvation = -94.057801 kcal Electronic energy + Delta-G solvation = -25327.177452 eV Core-core repulsion = 21321.366102 eV Total energy + Delta-G solvation = -4005.811351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.37101 -40.96227 -39.38013 -38.49233 -35.69954 -34.70358 -32.47729 -31.51827 -29.72847 -28.13107 -27.54526 -26.77919 -25.75587 -25.39749 -21.66523 -21.01795 -20.48377 -19.61299 -18.16450 -17.90218 -17.46683 -16.87722 -16.44748 -16.25950 -16.18925 -15.49123 -15.21684 -14.96864 -14.70284 -14.32169 -14.17458 -13.88020 -13.65728 -13.54391 -13.32073 -13.25687 -13.19722 -12.83894 -12.68017 -12.50890 -12.44077 -11.99256 -11.86174 -11.67481 -11.45604 -11.33883 -11.30246 -11.17393 -11.04148 -10.65551 -9.94916 -9.88770 -9.63045 -9.29613 -9.12634 -9.03076 -8.54989 -6.96549 -6.32653 -4.04914 1.86316 2.09956 2.68386 2.87849 3.19095 3.30358 3.47189 3.50459 3.58097 3.79164 3.86890 4.07297 4.22500 4.29534 4.32165 4.41052 4.62952 4.67013 4.72384 4.80034 4.86612 4.88407 5.00995 5.05845 5.06518 5.12397 5.18932 5.24099 5.34974 5.40860 5.48346 5.54895 5.57693 5.69431 5.71629 5.80054 5.94676 6.08055 6.37649 7.02702 7.47417 7.48660 7.90259 8.37443 8.38549 9.13477 10.76470 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.001785 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.065537 B =15680.538017 C =16233.990383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.109 4.109 3 C -0.150 4.150 4 C 0.091 3.909 5 H 0.098 0.902 6 F -0.186 7.186 7 C 0.516 3.484 8 O -0.514 6.514 9 N -0.641 5.641 10 C 0.117 3.883 11 C -0.133 4.133 12 C 0.130 3.870 13 N -0.738 5.738 14 C 0.531 3.469 15 O -0.518 6.518 16 C -0.125 4.125 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.100 3.900 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.400 0.600 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.271 0.729 43 H 0.097 0.903 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.148 15.701 -6.322 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.129 4.129 3 C -0.207 4.207 4 C 0.051 3.949 5 H 0.116 0.884 6 F -0.167 7.167 7 C 0.304 3.696 8 O -0.390 6.390 9 N -0.377 5.377 10 C -0.005 4.005 11 C -0.153 4.153 12 C 0.006 3.994 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.392 6.392 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.670 4.670 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.022 4.022 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.234 0.766 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.373 14.416 -5.043 28.763 hybrid contribution 0.876 0.714 -0.725 1.342 sum -23.498 15.129 -5.768 28.536 Atomic orbital electron populations 1.22124 0.93113 1.05227 1.01798 1.21569 0.98721 0.96970 0.95600 1.21863 1.01063 0.94765 1.02998 1.21559 0.99268 0.89072 0.84983 0.88413 1.92876 1.87545 1.84392 1.51892 1.20683 0.84301 0.87077 0.77575 1.90649 1.19116 1.82478 1.46713 1.50096 1.13379 1.07563 1.66651 1.23199 0.94487 0.79479 1.03326 1.23430 0.95503 0.94680 1.01657 1.21222 0.80524 0.99225 0.98466 1.45934 1.07212 1.44548 1.41555 1.20299 0.87553 0.79276 0.81187 1.90716 1.79923 1.38077 1.30487 1.23277 0.93506 1.05580 1.05153 1.84815 1.04649 1.52347 1.49752 1.22307 0.90278 1.29147 1.25260 0.89369 1.24718 0.94066 0.96179 0.96356 1.69936 0.99014 1.40928 1.41723 0.86735 0.79821 0.82365 0.82924 1.19203 1.19926 1.15925 1.23551 0.80397 0.97059 1.01233 0.92386 0.92581 0.88992 0.89357 0.91828 0.92280 0.91563 0.89205 0.88763 0.86881 0.90845 0.90627 0.76578 0.88459 0.88411 0.91913 0.88478 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 8.71 37.16 0.32 -1.03 16 2 C -0.11 -0.73 2.75 -90.62 -0.25 -0.98 16 3 C -0.15 -0.79 9.11 37.16 0.34 -0.45 16 4 C 0.09 0.67 3.38 -27.88 -0.09 0.58 16 5 H 0.10 0.48 7.26 -51.93 -0.38 0.10 16 6 F -0.19 -1.80 16.03 2.25 0.04 -1.77 16 7 C 0.52 4.87 7.40 -10.99 -0.08 4.78 16 8 O -0.51 -6.50 14.52 5.56 0.08 -6.41 16 9 N -0.64 -4.66 3.61 -178.36 -0.64 -5.31 16 10 C 0.12 0.72 8.40 -2.97 -0.02 0.69 16 11 C -0.13 -0.66 3.94 -89.69 -0.35 -1.01 16 12 C 0.13 1.02 5.53 -4.04 -0.02 1.00 16 13 N -0.74 -7.28 5.56 -60.29 -0.33 -7.62 16 14 C 0.53 8.36 7.85 -10.99 -0.09 8.27 16 15 O -0.52 -10.31 15.86 5.55 0.09 -10.22 16 16 C -0.12 -2.21 6.16 36.00 0.22 -1.99 16 17 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 18 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 19 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 20 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 21 N -0.88 -26.03 13.97 55.49 0.78 -25.25 16 22 Si 0.86 21.32 27.74 -169.99 -4.71 16.61 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 26 C 0.10 0.47 7.82 -2.98 -0.02 0.45 16 27 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.95 5.25 -51.93 -0.27 0.68 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.37 7.93 -51.93 -0.41 -0.04 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 2.74 8.47 -40.82 -0.35 2.40 16 40 H 0.10 1.60 8.14 -51.92 -0.42 1.17 16 41 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.10 0.45 7.89 -51.93 -0.41 0.04 16 44 H 0.09 0.26 7.83 -51.93 -0.41 -0.14 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -35.95 381.24 -7.63 -43.58 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.83 Total: -2.56 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 0.16 Total: -1.35 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.20 Total: -38.18 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.17 Total: -16.63 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.61 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.95 -7.63 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704562373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.477 kcal (2) G-P(sol) polarization free energy of solvation -35.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds