Wall clock time and date at job start Sat Apr 11 2020 03:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46876 * 2 1 4 4 F 1.39898 * 109.47137 * 240.00108 * 2 1 3 5 5 C 1.50700 * 109.47208 * 119.99865 * 2 1 3 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 2 1 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 2 1 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 2 9 9 C 1.52999 * 109.46992 * 179.97438 * 8 7 5 10 10 H 1.09000 * 112.85195 * 43.80332 * 9 8 7 11 11 C 1.53783 * 113.61675 * 175.00069 * 9 8 7 12 12 C 1.53781 * 87.08111 * 139.98104 * 11 9 8 13 13 H 1.08998 * 113.61709 * 89.11666 * 12 11 9 14 14 N 1.46506 * 113.61252 * 220.01610 * 12 11 9 15 15 C 1.34773 * 120.00200 * 204.99759 * 14 12 11 16 16 O 1.21290 * 119.99691 * 0.02562 * 15 14 12 17 17 C 1.50692 * 120.00113 * 180.02562 * 15 14 12 18 18 S 1.81005 * 109.47185 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00227 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.38795 * 120.00360 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99711 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00468 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47168 * 120.00191 * 23 21 19 26 26 H 1.48497 * 109.47799 * 240.00447 * 23 21 19 27 27 C 1.53779 * 87.08448 * 334.56638 * 12 11 9 28 28 H 1.08998 * 109.46846 * 299.99685 * 1 2 3 29 29 H 1.08996 * 109.47100 * 59.99748 * 1 2 3 30 30 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47239 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47323 * 300.00275 * 3 2 1 33 33 H 1.09006 * 109.47458 * 59.99925 * 3 2 1 34 34 H 0.97000 * 119.99894 * 359.71837 * 7 5 2 35 35 H 1.08995 * 109.47421 * 299.99467 * 8 7 5 36 36 H 1.09001 * 109.47621 * 60.00103 * 8 7 5 37 37 H 1.09001 * 113.61188 * 254.53071 * 11 9 8 38 38 H 1.09000 * 113.61586 * 25.34798 * 11 9 8 39 39 H 0.96999 * 119.99659 * 25.00758 * 14 12 11 40 40 H 1.09000 * 109.47380 * 300.00346 * 17 15 14 41 41 H 1.08995 * 109.47350 * 60.00781 * 17 15 14 42 42 H 0.97000 * 119.99774 * 179.97438 * 22 21 19 43 43 H 1.09001 * 113.61494 * 270.88758 * 27 12 11 44 44 H 1.08997 * 113.61247 * 139.98009 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0291 7 7 3.3575 -0.8286 1.4465 8 6 3.8458 -1.5139 2.6457 9 6 5.3757 -1.5095 2.6482 10 1 5.7968 -0.5446 2.3656 11 6 5.9914 -2.0991 3.9282 12 6 7.0411 -2.7646 3.0226 13 1 7.9184 -2.1436 2.8415 14 7 7.3831 -4.1308 3.4265 15 6 8.5803 -4.6523 3.0932 16 8 9.3748 -3.9905 2.4592 17 6 8.9318 -6.0577 3.5082 18 16 10.5935 -6.4638 2.9164 19 6 10.7402 -8.1115 3.5231 20 1 9.9269 -8.5577 4.0761 21 6 11.9006 -8.8363 3.2896 22 7 12.8917 -8.2925 2.6152 23 14 12.0565 -10.5828 3.9334 24 1 10.8134 -10.9575 4.6542 25 1 12.2677 -11.5130 2.7952 26 1 13.2121 -10.6669 4.8622 27 6 5.9964 -2.6987 1.8960 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.9878 -0.4599 0.8079 35 1 3.4792 -0.9984 3.5334 36 1 3.4858 -2.5427 2.6483 37 1 6.4072 -1.3473 4.5990 38 1 5.3406 -2.8087 4.4390 39 1 6.7478 -4.6599 3.9338 40 1 8.9052 -6.1329 4.5953 41 1 8.2123 -6.7543 3.0781 42 1 13.7028 -8.7990 2.4523 43 1 5.3475 -3.5732 1.8505 44 1 6.4163 -2.4309 0.9264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719407250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:25 Heat of formation + Delta-G solvation = -116.449639 kcal Electronic energy + Delta-G solvation = -25109.145203 eV Core-core repulsion = 21102.362870 eV Total energy + Delta-G solvation = -4006.782334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.38680 -40.50545 -39.77861 -38.23093 -35.18244 -34.23033 -33.15385 -32.43563 -29.58815 -28.29758 -27.71479 -26.02064 -25.50574 -24.18519 -22.47909 -20.76934 -20.43644 -19.77045 -18.30827 -17.81677 -16.99436 -16.55377 -16.43477 -16.12787 -15.71090 -15.45260 -15.14205 -14.93130 -14.81186 -14.68524 -14.05889 -13.74103 -13.61943 -13.24599 -13.09308 -12.93557 -12.81075 -12.74116 -12.65475 -12.51715 -12.50503 -12.37723 -11.86296 -11.57438 -11.50617 -11.08042 -11.04256 -11.00784 -10.78054 -10.68311 -10.21318 -9.80983 -9.57923 -9.39982 -9.08558 -8.88419 -8.24415 -6.50990 -6.22738 -3.93230 1.94843 2.48299 3.03284 3.04121 3.21043 3.27930 3.32710 3.70438 3.76036 3.86102 4.05357 4.14795 4.19570 4.21337 4.28515 4.40833 4.61626 4.80491 4.87053 4.94042 5.05996 5.10757 5.12648 5.17439 5.24446 5.34721 5.41056 5.41509 5.45304 5.50646 5.58081 5.67157 5.73330 5.75047 5.87880 5.90350 6.11170 6.13683 6.64012 6.88303 7.57291 7.59145 7.69245 8.34620 8.58942 9.22866 10.84766 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.027767 B = 0.001667 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.160241 B =16791.837399 C =16920.585969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 C -0.174 4.174 4 F -0.193 7.193 5 C 0.499 3.501 6 O -0.523 6.523 7 N -0.717 5.717 8 C 0.130 3.870 9 C -0.124 4.124 10 H 0.101 0.899 11 C -0.135 4.135 12 C 0.128 3.872 13 H 0.116 0.884 14 N -0.729 5.729 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.155 4.155 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.149 4.149 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.405 0.595 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.399 0.601 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.087 0.913 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.014 20.210 -1.874 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.080 3.920 3 C -0.231 4.231 4 F -0.174 7.174 5 C 0.282 3.718 6 O -0.398 6.398 7 N -0.368 5.368 8 C 0.007 3.993 9 C -0.143 4.143 10 H 0.119 0.881 11 C -0.174 4.174 12 C 0.022 3.978 13 H 0.134 0.866 14 N -0.382 5.382 15 C 0.319 3.681 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.188 4.188 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.240 0.760 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.233 0.767 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.032 20.920 -2.434 31.210 hybrid contribution -0.729 -2.052 0.958 2.379 sum -23.761 18.868 -1.475 30.377 Atomic orbital electron populations 1.22177 0.90782 1.04770 1.03921 1.21210 0.97064 0.92911 0.80777 1.22423 1.02741 0.93117 1.04869 1.92943 1.90227 1.82672 1.51523 1.20830 0.82902 0.80246 0.87813 1.90745 1.55231 1.47152 1.46699 1.46015 1.06807 1.58360 1.25634 1.21448 0.92962 0.97818 0.87104 1.22637 0.93405 0.99603 0.98694 0.88097 1.23331 0.97626 1.00243 0.96190 1.22347 0.96738 0.84237 0.94510 0.86621 1.45986 1.18221 1.15066 1.58889 1.20355 0.80744 0.88451 0.78505 1.90695 1.48717 1.61511 1.38291 1.23543 1.07189 0.95050 1.04749 1.85389 1.08323 1.17045 1.72675 1.22912 1.04897 0.99326 1.41208 0.90868 1.24996 0.94762 0.98973 0.94881 1.70031 1.05373 1.37220 1.37666 0.86112 0.78251 0.82485 0.78615 1.19621 1.20562 1.20554 1.23614 0.98301 0.97727 0.99137 0.89893 0.90555 0.90542 0.90795 0.89849 0.89904 0.76025 0.90930 0.90893 0.90274 0.89193 0.76707 0.89201 0.89219 0.92234 0.89438 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 8.22 37.16 0.31 -0.65 16 2 C 0.10 0.68 1.54 -91.77 -0.14 0.54 16 3 C -0.17 -0.67 8.82 37.16 0.33 -0.34 16 4 F -0.19 -1.63 16.79 2.25 0.04 -1.60 16 5 C 0.50 4.36 6.88 -10.98 -0.08 4.28 16 6 O -0.52 -6.34 15.98 5.55 0.09 -6.25 16 7 N -0.72 -4.88 5.44 -60.30 -0.33 -5.20 16 8 C 0.13 0.90 5.51 -4.04 -0.02 0.87 16 9 C -0.12 -0.77 3.75 -89.80 -0.34 -1.11 16 10 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 11 C -0.14 -0.94 7.39 -25.92 -0.19 -1.13 16 12 C 0.13 1.33 4.24 -67.12 -0.28 1.04 16 13 H 0.12 1.42 7.47 -51.93 -0.39 1.03 16 14 N -0.73 -9.16 5.35 -53.02 -0.28 -9.45 16 15 C 0.53 9.68 7.85 -10.99 -0.09 9.60 16 16 O -0.52 -11.50 15.46 5.55 0.09 -11.41 16 17 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 23 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 C -0.15 -1.29 7.43 -25.91 -0.19 -1.49 16 28 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.07 0.22 7.56 -51.93 -0.39 -0.17 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.40 1.99 7.88 -40.82 -0.32 1.67 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.59 7.84 -51.93 -0.41 0.19 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.40 3.89 8.73 -40.82 -0.36 3.54 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.09 0.79 7.89 -51.93 -0.41 0.38 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -36.44 387.53 -8.22 -44.67 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.88 Total: 0.48 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.28 Total: -4.21 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.12 Total: -40.05 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.17 Total: -17.66 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.44 -8.22 -44.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719407250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.781 kcal (2) G-P(sol) polarization free energy of solvation -36.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds