Wall clock time and date at job start Sat Apr 11 2020 03:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.99903 * 2 1 4 4 C 1.54323 * 109.88353 * 238.90227 * 2 1 3 5 5 H 1.09005 * 110.72091 * 336.93127 * 4 2 1 6 6 N 1.46505 * 110.72075 * 100.02602 * 4 2 1 7 7 C 1.34778 * 119.99792 * 205.00283 * 6 4 2 8 8 O 1.21278 * 120.00140 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99723 * 180.02562 * 7 6 4 10 10 S 1.80993 * 109.47026 * 179.97438 * 9 7 6 11 11 C 1.76201 * 99.99993 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00153 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00523 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99397 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00627 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00544 * 15 13 11 18 18 H 1.48504 * 109.46636 * 60.00103 * 15 13 11 19 19 C 1.55158 * 102.94490 * 218.39141 * 4 2 1 20 20 C 1.54914 * 101.57792 * 35.50005 * 19 4 2 21 21 N 1.47025 * 109.87996 * 121.09496 * 2 1 3 22 22 C 1.34769 * 125.64572 * 298.39205 * 21 2 1 23 23 O 1.21278 * 120.00226 * 0.02562 * 22 21 2 24 24 C 1.50706 * 119.99552 * 180.02562 * 22 21 2 25 25 C 1.53007 * 109.46892 * 180.02562 * 24 22 21 26 26 C 1.53004 * 109.47010 * 179.97438 * 25 24 22 27 27 F 1.39897 * 109.46918 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47166 * 181.09235 * 1 2 3 29 29 H 1.08998 * 109.47117 * 301.10096 * 1 2 3 30 30 H 1.08998 * 109.46914 * 61.09559 * 1 2 3 31 31 H 0.96999 * 119.99489 * 25.00355 * 6 4 2 32 32 H 1.09001 * 109.47144 * 59.99673 * 9 7 6 33 33 H 1.09006 * 109.47011 * 299.99863 * 9 7 6 34 34 H 0.97005 * 119.99723 * 179.97438 * 14 13 11 35 35 H 1.09002 * 111.00660 * 153.57330 * 19 4 2 36 36 H 1.09001 * 111.00179 * 277.42838 * 19 4 2 37 37 H 1.08999 * 110.36542 * 204.15041 * 20 19 4 38 38 H 1.08998 * 110.45625 * 81.87738 * 20 19 4 39 39 H 1.09004 * 109.47112 * 299.99438 * 24 22 21 40 40 H 1.08991 * 109.47242 * 59.99900 * 24 22 21 41 41 H 1.08999 * 109.47339 * 299.99931 * 25 24 22 42 42 H 1.09002 * 109.46921 * 60.00033 * 25 24 22 43 43 H 1.09000 * 109.46716 * 299.99734 * 26 25 24 44 44 H 1.08991 * 109.47140 * 59.99797 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3040 -1.4437 -1.6201 6 7 2.4555 0.1960 -2.2875 7 6 2.4582 -0.1885 -3.5793 8 8 2.1294 -1.3173 -3.8767 9 6 2.8709 0.7840 -4.6540 10 16 2.7709 -0.0247 -6.2702 11 6 3.2911 1.3006 -7.3082 12 1 3.5521 2.2551 -6.8754 13 6 3.3666 1.1178 -8.6820 14 7 3.0490 -0.0457 -9.2094 15 14 3.9174 2.5230 -9.7826 16 1 3.9123 2.0744 -11.1981 17 1 2.9876 3.6698 -9.6239 18 1 5.2899 2.9421 -9.4005 19 6 3.2877 -1.5143 -0.6923 20 6 2.8145 -1.8794 0.7369 21 7 2.0300 -0.7141 1.1840 22 6 1.8073 -0.3620 2.4657 23 8 1.1428 0.6207 2.7179 24 6 2.3842 -1.1894 3.5854 25 6 1.9849 -0.5774 4.9297 26 6 2.5700 -1.4178 6.0665 27 9 2.2054 -0.8579 7.2956 28 1 -0.3633 -1.0274 0.0196 29 1 -0.3633 0.5308 0.8799 30 1 -0.3633 0.4967 -0.8996 31 1 2.7189 1.0987 -2.0496 32 1 3.8951 1.1110 -4.4744 33 1 2.2057 1.6474 -4.6376 34 1 3.1014 -0.1734 -10.1696 35 1 3.4852 -2.4112 -1.2795 36 1 4.1655 -0.8689 -0.6604 37 1 3.6716 -2.0338 1.3923 38 1 2.1891 -2.7718 0.7147 39 1 1.9986 -2.2070 3.5211 40 1 3.4707 -1.2066 3.5020 41 1 2.3700 0.4403 4.9943 42 1 0.8982 -0.5606 5.0128 43 1 2.1844 -2.4353 6.0017 44 1 3.6566 -1.4350 5.9836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719599274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:27 Heat of formation + Delta-G solvation = -135.985610 kcal Electronic energy + Delta-G solvation = -25524.977122 eV Core-core repulsion = 21517.347645 eV Total energy + Delta-G solvation = -4007.629477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.02793 -40.82804 -39.32799 -37.77106 -34.56863 -34.19768 -32.46055 -31.74179 -31.26376 -29.06990 -27.57536 -25.72082 -25.36263 -23.53838 -22.39943 -21.28417 -20.59742 -19.24309 -17.90506 -17.59711 -17.13403 -16.85135 -16.28715 -16.20458 -15.83400 -15.48436 -15.15615 -14.97860 -14.83220 -14.53086 -14.09579 -13.98329 -13.66601 -13.41971 -13.35079 -12.96599 -12.70935 -12.59488 -12.43446 -12.31637 -12.07786 -11.99811 -11.85539 -11.51601 -11.40127 -11.15315 -11.09446 -11.06296 -11.05585 -10.79726 -10.17491 -9.86242 -9.52198 -9.12786 -9.08525 -8.98690 -8.29225 -6.54306 -6.24923 -3.95990 2.24522 2.39813 2.96023 2.99491 3.21409 3.25502 3.28550 3.63440 3.82715 4.12641 4.17405 4.18328 4.24204 4.29872 4.52172 4.64079 4.67666 4.75301 4.77437 4.84399 4.92604 5.02526 5.08407 5.10408 5.15519 5.22431 5.34694 5.40189 5.45186 5.57649 5.67278 5.71877 5.72710 5.82480 5.85361 5.97319 6.02252 6.08603 6.49336 7.09580 7.55386 7.57200 7.77620 8.31724 8.48747 9.20487 10.82399 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.038016 B = 0.001777 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.349899 B =15755.320065 C =15892.446412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 H 0.081 0.919 4 C 0.140 3.860 5 H 0.109 0.891 6 N -0.730 5.730 7 C 0.536 3.464 8 O -0.514 6.514 9 C -0.154 4.154 10 S -0.058 6.058 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.283 1.283 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.147 4.147 20 C 0.099 3.901 21 N -0.615 5.615 22 C 0.530 3.470 23 O -0.535 6.535 24 C -0.135 4.135 25 C -0.139 4.139 26 C 0.062 3.938 27 F -0.218 7.218 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.400 0.600 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.269 0.731 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -3.765 27.267 27.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.026 3.974 3 H 0.099 0.901 4 C 0.034 3.966 5 H 0.127 0.873 6 N -0.384 5.384 7 C 0.323 3.677 8 O -0.388 6.388 9 C -0.305 4.305 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.208 1.208 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.186 4.186 20 C -0.024 4.024 21 N -0.350 5.350 22 C 0.319 3.681 23 O -0.412 6.412 24 C -0.175 4.175 25 C -0.178 4.178 26 C 0.007 3.993 27 F -0.199 7.199 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.234 0.766 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.263 -5.202 26.832 27.333 hybrid contribution 0.950 2.591 -0.315 2.777 sum 0.687 -2.611 26.518 26.655 Atomic orbital electron populations 1.22126 0.93812 1.02682 1.03359 1.21720 0.95294 0.96390 0.83974 0.90103 1.21925 0.96783 0.91474 0.86428 0.87318 1.45957 1.70893 1.15696 1.05902 1.20336 0.76379 0.88675 0.82338 1.90703 1.45893 1.20470 1.81727 1.23541 1.04233 1.01832 1.00889 1.85378 1.88321 1.18426 0.91071 1.22826 1.52525 0.99336 0.93852 0.90951 1.24988 0.94854 0.96552 0.97120 1.70007 1.45115 1.22585 1.12561 0.86222 0.79195 0.81192 0.78891 1.20788 1.19928 1.19937 1.23260 0.98601 1.02254 0.94513 1.22401 0.95348 0.88734 0.95926 1.48548 1.52798 1.28730 1.04926 1.20235 0.80397 0.85336 0.82137 1.90726 1.39713 1.27645 1.83107 1.21535 1.02705 1.00381 0.92848 1.21929 1.03262 1.00649 0.91926 1.21993 1.00723 0.97170 0.79426 1.92779 1.93667 1.87535 1.45908 0.92230 0.91015 0.91151 0.76569 0.89130 0.89100 0.92101 0.88746 0.89986 0.90120 0.90647 0.88422 0.88457 0.89870 0.89865 0.90662 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.09 37.16 0.34 -1.28 16 2 C 0.13 1.22 3.21 -66.95 -0.21 1.01 16 3 H 0.08 0.79 7.72 -51.93 -0.40 0.39 16 4 C 0.14 1.44 2.85 -66.09 -0.19 1.26 16 5 H 0.11 1.31 7.25 -51.93 -0.38 0.93 16 6 N -0.73 -8.70 5.18 -52.02 -0.27 -8.97 16 7 C 0.54 9.18 7.85 -10.98 -0.09 9.10 16 8 O -0.51 -10.77 15.51 5.56 0.09 -10.69 16 9 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 10 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 11 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 15 Si 0.92 21.10 29.55 -169.99 -5.02 16.07 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.15 -1.21 6.77 -24.58 -0.17 -1.37 16 20 C 0.10 0.59 6.69 -2.53 -0.02 0.57 16 21 N -0.61 -5.03 3.06 -163.01 -0.50 -5.53 16 22 C 0.53 4.76 7.64 -10.99 -0.08 4.67 16 23 O -0.54 -6.87 15.03 5.56 0.08 -6.79 16 24 C -0.13 -0.66 4.71 -27.88 -0.13 -0.80 16 25 C -0.14 -0.85 4.96 -26.73 -0.13 -0.98 16 26 C 0.06 0.29 7.55 37.16 0.28 0.57 16 27 F -0.22 -1.84 17.36 2.25 0.04 -1.80 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.81 6.90 -51.93 -0.36 0.45 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.40 3.78 8.37 -40.82 -0.34 3.44 16 32 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 33 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.30 7.48 -51.93 -0.39 -0.09 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.29 7.85 -51.93 -0.41 -0.12 16 41 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 42 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -35.80 382.56 -8.16 -43.97 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.89 Total: -0.57 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 0.02 Total: -2.70 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.04 Total: -39.52 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.17 Total: -17.48 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.80 -8.16 -43.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719599274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.018 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds