Wall clock time and date at job start Sat Apr 11 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47069 * 2 1 4 4 H 1.09006 * 109.47117 * 304.99561 * 3 2 1 5 5 F 1.39899 * 109.47752 * 64.99878 * 3 2 1 6 6 C 1.50703 * 109.47113 * 185.00142 * 3 2 1 7 7 O 1.21283 * 119.99488 * 314.99590 * 6 3 2 8 8 N 1.34777 * 120.00290 * 135.00030 * 6 3 2 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 3 10 10 H 1.09004 * 110.64070 * 327.86302 * 9 8 6 11 11 C 1.55160 * 110.72044 * 91.19909 * 9 8 6 12 12 C 1.54914 * 101.58029 * 153.86492 * 11 9 8 13 13 N 1.47432 * 104.83170 * 322.99062 * 12 11 9 14 14 C 1.34770 * 125.64612 * 204.16654 * 13 12 11 15 15 O 1.21290 * 119.99917 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00266 * 359.95635 * 14 13 12 17 17 S 1.81000 * 109.47393 * 180.02562 * 16 14 13 18 18 C 1.76191 * 100.00466 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99709 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00554 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00319 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99591 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46982 * 90.00044 * 22 20 18 24 24 H 1.48498 * 109.47029 * 209.99988 * 22 20 18 25 25 H 1.48493 * 109.47174 * 330.00127 * 22 20 18 26 26 C 1.47020 * 108.70275 * 24.12610 * 13 12 11 27 27 H 1.08992 * 109.88623 * 239.52601 * 26 13 12 28 28 C 1.53008 * 110.00785 * 118.42891 * 26 13 12 29 29 H 1.09003 * 109.46926 * 60.00358 * 1 2 3 30 30 H 1.09001 * 109.47389 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47133 * 300.00536 * 1 2 3 32 32 H 1.08999 * 109.46839 * 239.99926 * 2 1 3 33 33 H 1.09003 * 109.46926 * 119.99642 * 2 1 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 3 35 35 H 1.08996 * 111.00405 * 271.93543 * 11 9 8 36 36 H 1.08994 * 111.00430 * 35.79405 * 11 9 8 37 37 H 1.08995 * 110.36718 * 204.15258 * 12 11 9 38 38 H 1.09000 * 110.45900 * 81.87549 * 12 11 9 39 39 H 1.08998 * 109.47497 * 299.99827 * 16 14 13 40 40 H 1.08997 * 109.47457 * 59.99906 * 16 14 13 41 41 H 0.96994 * 119.99640 * 180.02562 * 21 20 18 42 42 H 1.08995 * 109.47154 * 302.11611 * 28 26 13 43 43 H 1.09001 * 109.46728 * 62.11974 * 28 26 13 44 44 H 1.08999 * 109.46890 * 182.11363 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 9 1.6699 2.0681 1.1953 6 6 3.5419 1.4443 -0.1239 7 8 4.2063 0.6810 0.5447 8 7 4.1467 2.2940 -0.9774 9 6 5.6064 2.2915 -1.1022 10 1 6.0728 2.0325 -0.1517 11 6 6.0598 1.3195 -2.2235 12 6 7.4142 1.9419 -2.6456 13 7 7.2048 3.3984 -2.5549 14 6 7.8983 4.3352 -3.2315 15 8 7.6389 5.5101 -3.0786 16 6 8.9962 3.9230 -4.1778 17 16 9.7323 5.3972 -4.9268 18 6 10.9487 4.6435 -5.9547 19 1 11.0494 3.5682 -5.9727 20 6 11.7775 5.4313 -6.7414 21 7 12.6859 4.8681 -7.5097 22 14 11.6029 7.2909 -6.7109 23 1 12.4837 7.8535 -5.6560 24 1 11.9945 7.8466 -8.0311 25 1 10.1916 7.6508 -6.4212 26 6 6.1137 3.6596 -1.6047 27 1 5.3060 4.1934 -2.1054 28 6 6.6322 4.4869 -0.4266 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6152 2.9042 -1.5123 35 1 6.1978 0.3109 -1.8340 36 1 5.3529 1.3231 -3.0530 37 1 7.6602 1.6570 -3.6685 38 1 8.2058 1.6293 -1.9646 39 1 9.7616 3.3740 -3.6294 40 1 8.5822 3.2862 -4.9595 41 1 13.2653 5.4187 -8.0591 42 1 7.4512 3.9555 0.0580 43 1 6.9886 5.4512 -0.7889 44 1 5.8261 4.6434 0.2901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719635649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:29 Heat of formation + Delta-G solvation = -127.574723 kcal Electronic energy + Delta-G solvation = -26071.751069 eV Core-core repulsion = 22064.486315 eV Total energy + Delta-G solvation = -4007.264753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.36138 -40.75768 -39.59043 -37.53722 -34.68540 -34.50445 -32.46827 -31.92841 -31.21000 -28.99704 -28.07071 -25.66084 -25.63981 -23.05611 -22.84204 -21.41729 -21.13081 -19.23880 -18.21087 -17.81078 -17.41837 -16.98959 -16.48794 -16.15821 -15.61800 -15.24375 -15.05614 -14.91540 -14.75458 -14.29702 -14.16155 -13.93894 -13.87939 -13.42661 -13.07380 -13.05658 -12.82774 -12.79954 -12.70260 -12.47347 -12.29408 -11.98427 -11.82309 -11.64087 -11.55356 -11.42521 -11.29657 -11.09838 -11.03109 -10.64693 -10.27206 -9.88787 -9.67071 -9.50867 -9.03211 -8.72278 -8.53744 -6.95804 -6.31633 -4.03888 1.89453 2.26374 2.69370 2.86449 3.14691 3.30987 3.47757 3.55307 3.84573 3.91665 4.04596 4.08056 4.19485 4.30371 4.34188 4.64190 4.65299 4.78125 4.82902 4.88326 4.89389 5.04251 5.07394 5.10343 5.18904 5.32079 5.37972 5.40867 5.46629 5.53775 5.58834 5.63578 5.67595 5.70801 5.77032 5.96161 5.97261 6.10413 6.31677 6.81922 7.46448 7.53716 7.91315 8.35022 8.38774 9.14382 10.77509 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.002105 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.788501 B =13300.655943 C =13612.532931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.084 3.916 4 H 0.101 0.899 5 F -0.188 7.188 6 C 0.495 3.505 7 O -0.516 6.516 8 N -0.712 5.712 9 C 0.134 3.866 10 H 0.111 0.889 11 C -0.143 4.143 12 C 0.100 3.900 13 N -0.620 5.620 14 C 0.550 3.450 15 O -0.514 6.514 16 C -0.118 4.118 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.879 5.879 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.134 3.866 27 H 0.079 0.921 28 C -0.163 4.163 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.405 0.595 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.342 -10.338 14.012 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.044 3.956 4 H 0.119 0.881 5 F -0.169 7.169 6 C 0.279 3.721 7 O -0.390 6.390 8 N -0.364 5.364 9 C 0.029 3.971 10 H 0.129 0.871 11 C -0.182 4.182 12 C -0.023 4.023 13 N -0.358 5.358 14 C 0.339 3.661 15 O -0.388 6.388 16 C -0.269 4.269 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C 0.030 3.970 27 H 0.097 0.903 28 C -0.222 4.222 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.241 0.759 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.042 -9.037 14.575 28.723 hybrid contribution 0.284 -0.337 -0.617 0.758 sum -22.758 -9.374 13.958 28.295 Atomic orbital electron populations 1.21782 0.93982 1.02811 1.02592 1.22002 0.97432 0.93319 1.05169 1.21636 0.91633 0.96552 0.85749 0.88114 1.92900 1.91978 1.83866 1.48181 1.21008 0.90469 0.80766 0.79883 1.90755 1.66029 1.38759 1.43462 1.46014 1.07535 1.39660 1.43164 1.22157 0.79842 0.94712 1.00433 0.87080 1.23214 0.96972 0.99598 0.98465 1.22334 0.97193 0.79913 1.02904 1.48477 1.36416 1.06796 1.44141 1.19997 0.81707 0.84712 0.79732 1.90701 1.66740 1.17028 1.64296 1.23261 0.98512 1.04836 1.00256 1.84786 1.44108 1.08279 1.54316 1.22299 1.19460 0.96853 1.28308 0.89367 1.24712 0.93696 0.99228 0.93659 1.69935 1.19660 1.36306 1.25679 0.86736 0.81619 0.85078 0.78420 1.19190 1.19920 1.15949 1.21560 0.90421 0.94399 0.90648 0.90329 1.22153 1.01477 1.01706 0.96820 0.92247 0.91579 0.91865 0.89670 0.89347 0.75945 0.89117 0.89963 0.89587 0.90741 0.88484 0.88506 0.91915 0.92133 0.90362 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.83 37.16 0.37 -0.29 16 2 C -0.14 -0.77 5.41 -26.73 -0.14 -0.92 16 3 C 0.08 0.51 3.77 -27.88 -0.11 0.41 16 4 H 0.10 0.30 8.00 -51.93 -0.42 -0.12 16 5 F -0.19 -1.64 16.75 2.25 0.04 -1.60 16 6 C 0.50 4.15 7.17 -10.98 -0.08 4.07 16 7 O -0.52 -6.27 16.25 5.55 0.09 -6.18 16 8 N -0.71 -4.83 5.18 -52.03 -0.27 -5.10 16 9 C 0.13 1.13 2.84 -66.09 -0.19 0.94 16 10 H 0.11 1.08 7.26 -51.93 -0.38 0.70 16 11 C -0.14 -1.11 6.77 -24.58 -0.17 -1.27 16 12 C 0.10 0.96 6.69 -2.52 -0.02 0.94 16 13 N -0.62 -7.91 3.07 -163.01 -0.50 -8.41 16 14 C 0.55 9.58 7.66 -10.99 -0.08 9.49 16 15 O -0.51 -10.69 14.92 5.55 0.08 -10.60 16 16 C -0.12 -2.25 5.16 36.00 0.19 -2.06 16 17 S -0.14 -3.53 18.55 -107.50 -1.99 -5.52 16 18 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 19 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 20 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 21 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 22 Si 0.86 21.57 27.74 -169.99 -4.72 16.85 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 26 C 0.13 1.41 3.20 -66.95 -0.21 1.19 16 27 H 0.08 0.81 7.72 -51.93 -0.40 0.41 16 28 C -0.16 -1.83 9.10 37.16 0.34 -1.49 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.31 7.94 -51.93 -0.41 -0.11 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.41 1.76 8.26 -40.82 -0.34 1.43 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.80 7.47 -51.93 -0.39 0.41 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 40 H 0.10 1.71 7.85 -51.92 -0.41 1.30 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.09 6.91 -51.93 -0.36 0.73 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 379.59 15.07 5.72 5.72 Total: -1.00 -35.34 379.59 -7.56 -42.91 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.90 Total: -1.75 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 0.11 Total: -0.82 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.01 Total: -39.01 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.17 Total: -16.78 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.85 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.34 -7.56 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719635649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.669 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds