Wall clock time and date at job start Sat Apr 11 2020 03:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47069 * 2 1 4 4 H 1.09006 * 109.47117 * 304.99561 * 3 2 1 5 5 F 1.39899 * 109.47752 * 64.99878 * 3 2 1 6 6 C 1.50703 * 109.47113 * 185.00142 * 3 2 1 7 7 O 1.21283 * 119.99488 * 314.99590 * 6 3 2 8 8 N 1.34777 * 120.00290 * 135.00030 * 6 3 2 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 3 10 10 H 1.09004 * 110.64070 * 327.86302 * 9 8 6 11 11 C 1.55160 * 110.72044 * 91.19909 * 9 8 6 12 12 C 1.54914 * 101.58029 * 153.86492 * 11 9 8 13 13 N 1.47432 * 104.83170 * 322.99062 * 12 11 9 14 14 C 1.34770 * 125.64612 * 204.16654 * 13 12 11 15 15 O 1.21290 * 119.99917 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00266 * 359.95635 * 14 13 12 17 17 S 1.81000 * 109.47393 * 180.02562 * 16 14 13 18 18 C 1.76191 * 100.00466 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99709 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00554 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00319 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 119.99591 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46982 * 90.00044 * 22 20 18 24 24 H 1.48498 * 109.47029 * 209.99988 * 22 20 18 25 25 H 1.48493 * 109.47174 * 330.00127 * 22 20 18 26 26 C 1.47020 * 108.70275 * 24.12610 * 13 12 11 27 27 H 1.08992 * 109.88623 * 239.52601 * 26 13 12 28 28 C 1.53008 * 110.00785 * 118.42891 * 26 13 12 29 29 H 1.09003 * 109.46926 * 60.00358 * 1 2 3 30 30 H 1.09001 * 109.47389 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47133 * 300.00536 * 1 2 3 32 32 H 1.08999 * 109.46839 * 239.99926 * 2 1 3 33 33 H 1.09003 * 109.46926 * 119.99642 * 2 1 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 8 6 3 35 35 H 1.08996 * 111.00405 * 271.93543 * 11 9 8 36 36 H 1.08994 * 111.00430 * 35.79405 * 11 9 8 37 37 H 1.08995 * 110.36718 * 204.15258 * 12 11 9 38 38 H 1.09000 * 110.45900 * 81.87549 * 12 11 9 39 39 H 1.08998 * 109.47497 * 299.99827 * 16 14 13 40 40 H 1.08997 * 109.47457 * 59.99906 * 16 14 13 41 41 H 0.96994 * 119.99640 * 180.02562 * 21 20 18 42 42 H 1.08995 * 109.47154 * 302.11611 * 28 26 13 43 43 H 1.09001 * 109.46728 * 62.11974 * 28 26 13 44 44 H 1.08999 * 109.46890 * 182.11363 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 9 1.6699 2.0681 1.1953 6 6 3.5419 1.4443 -0.1239 7 8 4.2063 0.6810 0.5447 8 7 4.1467 2.2940 -0.9774 9 6 5.6064 2.2915 -1.1022 10 1 6.0728 2.0325 -0.1517 11 6 6.0598 1.3195 -2.2235 12 6 7.4142 1.9419 -2.6456 13 7 7.2048 3.3984 -2.5549 14 6 7.8983 4.3352 -3.2315 15 8 7.6389 5.5101 -3.0786 16 6 8.9962 3.9230 -4.1778 17 16 9.7323 5.3972 -4.9268 18 6 10.9487 4.6435 -5.9547 19 1 11.0494 3.5682 -5.9727 20 6 11.7775 5.4313 -6.7414 21 7 12.6859 4.8681 -7.5097 22 14 11.6029 7.2909 -6.7109 23 1 12.4837 7.8535 -5.6560 24 1 11.9945 7.8466 -8.0311 25 1 10.1916 7.6508 -6.4212 26 6 6.1137 3.6596 -1.6047 27 1 5.3060 4.1934 -2.1054 28 6 6.6322 4.4869 -0.4266 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6152 2.9042 -1.5123 35 1 6.1978 0.3109 -1.8340 36 1 5.3529 1.3231 -3.0530 37 1 7.6602 1.6570 -3.6685 38 1 8.2058 1.6293 -1.9646 39 1 9.7616 3.3740 -3.6294 40 1 8.5822 3.2862 -4.9595 41 1 13.2653 5.4187 -8.0591 42 1 7.4512 3.9555 0.0580 43 1 6.9886 5.4512 -0.7889 44 1 5.8261 4.6434 0.2901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719635649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:29 Heat of formation + Delta-G solvation = -151.839114 kcal Electronic energy + Delta-G solvation = -26072.803252 eV Core-core repulsion = 22064.486315 eV Total energy + Delta-G solvation = -4008.316936 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.93596 -41.64979 -40.53345 -38.64600 -35.51668 -34.93659 -34.67569 -32.91939 -32.12927 -30.22608 -28.71880 -27.85021 -26.41863 -24.05546 -23.36711 -22.14271 -21.75902 -20.50487 -19.52944 -18.87291 -18.38190 -17.75532 -17.48866 -17.13480 -16.96815 -16.48708 -16.34253 -15.79627 -15.71900 -15.36661 -15.27308 -14.91437 -14.77436 -14.70676 -14.13075 -14.04917 -13.91578 -13.70342 -13.34830 -13.33249 -13.27981 -13.07852 -13.01215 -12.87972 -12.75644 -12.60052 -12.32675 -12.01083 -11.90288 -11.85834 -11.82457 -11.17570 -11.02871 -10.90155 -10.54681 -10.28451 -9.80713 -9.00865 -8.51818 -6.22925 0.93666 1.24585 1.31273 1.40970 1.48706 1.51346 1.73194 2.11667 2.24501 2.66925 2.86416 3.17370 3.34045 3.43747 3.52828 3.69965 3.74541 3.86551 3.92155 4.09669 4.13376 4.19993 4.24289 4.40783 4.41764 4.51565 4.51632 4.62630 4.69873 4.75107 4.83754 4.93372 5.00525 5.06370 5.15002 5.16325 5.26352 5.35505 5.36724 5.70403 6.11168 6.24213 6.31165 6.93235 6.94735 7.03400 8.60421 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.032445 B = 0.002105 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.788501 B =13300.655943 C =13612.532931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.140 4.140 3 C 0.083 3.917 4 H 0.141 0.859 5 F -0.204 7.204 6 C 0.496 3.504 7 O -0.558 6.558 8 N -0.698 5.698 9 C 0.143 3.857 10 H 0.101 0.899 11 C -0.131 4.131 12 C 0.091 3.909 13 N -0.610 5.610 14 C 0.552 3.448 15 O -0.555 6.555 16 C -0.104 4.104 17 S -0.173 6.173 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.236 1.236 26 C 0.133 3.867 27 H 0.086 0.914 28 C -0.159 4.159 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.420 0.580 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.277 0.723 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.432 -10.729 14.195 31.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.178 4.178 3 C 0.044 3.956 4 H 0.158 0.842 5 F -0.185 7.185 6 C 0.281 3.719 7 O -0.435 6.435 8 N -0.351 5.351 9 C 0.037 3.963 10 H 0.119 0.881 11 C -0.170 4.170 12 C -0.031 4.031 13 N -0.346 5.346 14 C 0.340 3.660 15 O -0.432 6.432 16 C -0.255 4.255 17 S 0.054 5.946 18 C -0.676 4.676 19 H 0.081 0.919 20 C -0.160 4.160 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.188 1.188 24 H -0.183 1.183 25 H -0.160 1.160 26 C 0.029 3.971 27 H 0.104 0.896 28 C -0.217 4.217 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.258 0.742 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.165 -9.457 14.756 30.667 hybrid contribution 0.879 -0.370 -0.586 1.120 sum -24.286 -9.827 14.170 29.785 Atomic orbital electron populations 1.21775 0.92918 1.03313 1.02906 1.22003 0.98279 0.92851 1.04712 1.21877 0.90050 0.97435 0.86245 0.84154 1.92870 1.91950 1.84192 1.49489 1.21424 0.91353 0.80049 0.79124 1.90742 1.67108 1.40535 1.45102 1.45890 1.06892 1.39462 1.42865 1.21926 0.80766 0.93386 1.00173 0.88082 1.23170 0.95876 0.99543 0.98394 1.22635 0.98882 0.77800 1.03825 1.48360 1.35700 1.07592 1.42926 1.19585 0.81722 0.84734 0.79943 1.90689 1.68021 1.18707 1.65824 1.23219 0.99318 1.01937 1.01008 1.84694 1.43540 1.12129 1.54262 1.22445 1.20422 0.95925 1.28828 0.91909 1.25557 0.93474 1.03529 0.93417 1.70013 1.20629 1.38087 1.26636 0.85875 0.81509 0.79956 0.79080 1.18811 1.18332 1.15991 1.21700 0.89777 0.95691 0.89913 0.89574 1.22094 1.02085 1.00189 0.97379 0.90669 0.91058 0.92771 0.88507 0.91505 0.74191 0.88086 0.88645 0.88874 0.89760 0.87319 0.86895 0.91370 0.92291 0.93306 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.83 71.98 0.71 -0.26 16 2 C -0.14 -1.29 5.41 30.59 0.17 -1.12 16 3 C 0.08 0.82 3.77 29.85 0.11 0.93 16 4 H 0.14 0.27 8.00 -2.38 -0.02 0.25 16 5 F -0.20 -3.24 16.75 44.97 0.75 -2.48 16 6 C 0.50 7.24 7.17 87.66 0.63 7.87 16 7 O -0.56 -12.90 16.25 -3.04 -0.05 -12.95 16 8 N -0.70 -7.46 5.18 -436.90 -2.26 -9.73 16 9 C 0.14 2.06 2.84 46.18 0.13 2.19 16 10 H 0.10 1.77 7.26 -2.38 -0.02 1.75 16 11 C -0.13 -1.61 6.77 31.99 0.22 -1.39 16 12 C 0.09 1.51 6.69 86.86 0.58 2.09 16 13 N -0.61 -14.43 3.07 -788.03 -2.42 -16.85 16 14 C 0.55 18.66 7.66 87.66 0.67 19.33 16 15 O -0.55 -22.93 14.92 -3.06 -0.05 -22.98 16 16 C -0.10 -3.86 5.16 71.23 0.37 -3.49 16 17 S -0.17 -8.61 18.55 -56.49 -1.05 -9.65 16 18 C -0.53 -30.40 10.04 67.95 0.68 -29.72 16 19 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 20 C 0.05 2.66 5.50 84.86 0.47 3.13 16 21 N -0.92 -55.27 13.97 21.65 0.30 -54.96 16 22 Si 0.91 44.57 27.74 68.60 1.90 46.47 16 23 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 25 H -0.24 -11.45 6.74 99.48 0.67 -10.78 16 26 C 0.13 2.53 3.20 45.35 0.15 2.67 16 27 H 0.09 1.56 7.72 -2.39 -0.02 1.54 16 28 C -0.16 -3.39 9.10 71.98 0.66 -2.74 16 29 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.45 7.94 -2.39 -0.02 0.43 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.91 8.05 -2.39 -0.02 0.89 16 34 H 0.42 2.15 8.26 -92.71 -0.77 1.38 16 35 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.46 7.47 -2.39 -0.02 1.45 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 40 H 0.11 3.82 7.85 -2.40 -0.02 3.80 16 41 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.35 6.91 -2.39 -0.02 1.34 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -78.05 379.59 2.87 -75.18 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.20 Total: 8.47 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.53 Total: -0.52 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -4.38 Total: -81.54 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.10 Total: -35.93 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.75 Total: -2.48 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.47 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.05 Total: -9.65 kcal Total: -78.05 2.87 -75.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719635649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.661 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds