Wall clock time and date at job start Sat Apr 11 2020 03:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 F 1.39901 * 109.46944 * 240.00080 * 2 1 3 5 5 C 1.50699 * 109.47389 * 120.00085 * 2 1 3 6 6 O 1.21279 * 120.00130 * 250.00066 * 5 2 1 7 7 N 1.34776 * 119.99830 * 69.99518 * 5 2 1 8 8 C 1.46499 * 119.99921 * 179.97438 * 7 5 2 9 9 H 1.09003 * 109.47054 * 325.00617 * 8 7 5 10 10 C 1.53001 * 109.47392 * 205.00705 * 8 7 5 11 11 N 1.46493 * 109.47084 * 54.99694 * 10 8 7 12 12 C 1.34784 * 119.99864 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99649 * 359.72839 * 12 11 10 14 14 C 1.50694 * 119.99988 * 179.72721 * 12 11 10 15 15 S 1.81005 * 109.47244 * 179.97438 * 14 12 11 16 16 C 1.76192 * 100.00090 * 179.97438 * 15 14 12 17 17 H 1.08001 * 120.00308 * 0.02562 * 16 15 14 18 18 C 1.38797 * 119.99747 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00171 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47362 * 89.99969 * 20 18 16 22 22 H 1.48505 * 109.46829 * 209.99955 * 20 18 16 23 23 H 1.48498 * 109.47111 * 329.99341 * 20 18 16 24 24 C 1.52997 * 109.47039 * 85.00104 * 8 7 5 25 25 C 1.53003 * 117.50025 * 8.75213 * 24 8 7 26 26 C 1.52997 * 117.50117 * 300.09063 * 24 8 7 27 27 H 1.09001 * 109.47169 * 300.00008 * 1 2 3 28 28 H 1.08993 * 109.47461 * 60.00104 * 1 2 3 29 29 H 1.09001 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46609 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46872 * 300.00012 * 3 2 1 32 32 H 1.08994 * 109.46902 * 60.00174 * 3 2 1 33 33 H 0.97000 * 120.00581 * 0.02562 * 7 5 2 34 34 H 1.09007 * 109.46593 * 294.99951 * 10 8 7 35 35 H 1.09006 * 109.47216 * 175.00409 * 10 8 7 36 36 H 0.97000 * 120.00740 * 359.72857 * 11 10 8 37 37 H 1.08998 * 109.47224 * 299.99701 * 14 12 11 38 38 H 1.09002 * 109.47054 * 60.00213 * 14 12 11 39 39 H 0.97000 * 119.99868 * 179.97438 * 19 18 16 40 40 H 1.09006 * 115.54757 * 154.41612 * 24 8 7 41 41 H 1.09001 * 117.49296 * 359.97438 * 25 24 8 42 42 H 1.08991 * 117.50309 * 145.01577 * 25 24 8 43 43 H 1.08999 * 117.49717 * 214.97918 * 26 24 8 44 44 H 1.08993 * 117.49842 * 359.97328 * 26 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0324 -0.7104 1.2304 6 8 2.5732 -0.0817 2.1153 7 7 1.8806 -2.0445 1.3475 8 6 2.3695 -2.7352 2.5433 9 1 3.2844 -2.2557 2.8913 10 6 2.6579 -4.1991 2.2048 11 7 3.5848 -4.2649 1.0722 12 6 3.9830 -5.4613 0.5960 13 8 3.5778 -6.4832 1.1082 14 6 4.9316 -5.5290 -0.5729 15 16 5.2741 -7.2609 -0.9725 16 6 6.3738 -7.0494 -2.3327 17 1 6.6345 -6.0561 -2.6671 18 6 6.9052 -8.1595 -2.9746 19 7 6.5879 -9.3701 -2.5668 20 14 8.0718 -7.9353 -4.4163 21 1 9.4684 -7.8651 -3.9167 22 1 7.9359 -9.0850 -5.3464 23 1 7.7382 -6.6776 -5.1320 24 6 1.3075 -2.6655 3.6425 25 6 -0.0692 -2.1176 3.2610 26 6 0.8774 -1.2779 4.1224 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.4483 -2.5474 0.6396 34 1 1.7268 -4.7014 1.9420 35 1 3.1046 -4.6908 3.0690 36 1 3.9086 -3.4476 0.6623 37 1 4.4806 -5.0391 -1.4358 38 1 5.8630 -5.0252 -0.3147 39 1 6.9589 -10.1458 -3.0157 40 1 1.3435 -3.4652 4.3824 41 1 -0.2181 -1.8064 2.2270 42 1 -0.9388 -2.5564 3.7501 43 1 0.6302 -1.1647 5.1779 44 1 1.3514 -0.4146 3.6554 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720723509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:41 Heat of formation + Delta-G solvation = -101.656821 kcal Electronic energy + Delta-G solvation = -26569.375288 eV Core-core repulsion = 22563.234419 eV Total energy + Delta-G solvation = -4006.140869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.30159 -40.82262 -39.15646 -37.76725 -35.21735 -34.17081 -33.52456 -32.42940 -30.51685 -28.51625 -27.89115 -25.50682 -24.51844 -23.49498 -22.59531 -20.87707 -20.46593 -20.09949 -18.42975 -17.86134 -16.97147 -16.90534 -16.22220 -16.06654 -15.89925 -15.54445 -15.15269 -14.85036 -14.79628 -14.53804 -13.96061 -13.65445 -13.58178 -13.26810 -13.05293 -13.04833 -12.80792 -12.61702 -12.57758 -12.55359 -12.33546 -12.16685 -11.84245 -11.66371 -11.46556 -11.06173 -11.02493 -10.78540 -10.73236 -10.34982 -10.12884 -9.82126 -9.55809 -9.42739 -9.07683 -8.98093 -8.24652 -6.50485 -6.21855 -3.92449 1.95076 2.47127 2.97669 3.05068 3.22762 3.27489 3.31412 3.49160 3.66920 3.82464 3.94351 4.15483 4.20381 4.25600 4.30577 4.51182 4.63268 4.83087 4.94084 4.96898 5.01869 5.10479 5.13502 5.14711 5.17498 5.36009 5.40001 5.45408 5.47065 5.56844 5.61690 5.65322 5.75599 5.79343 5.87991 5.97310 6.01237 6.13733 6.50426 6.92122 7.59485 7.60536 7.62210 8.35338 8.54946 9.23681 10.85582 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.015425 B = 0.002664 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.759266 B =10508.583403 C =11840.764208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 C -0.159 4.159 4 F -0.192 7.192 5 C 0.503 3.497 6 O -0.515 6.515 7 N -0.714 5.714 8 C 0.164 3.836 9 H 0.102 0.898 10 C 0.117 3.883 11 N -0.740 5.740 12 C 0.533 3.467 13 O -0.516 6.516 14 C -0.154 4.154 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.167 4.167 25 C -0.176 4.176 26 C -0.181 4.181 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.408 0.592 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.721 22.133 9.145 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.080 3.920 3 C -0.217 4.217 4 F -0.173 7.173 5 C 0.287 3.713 6 O -0.391 6.391 7 N -0.366 5.366 8 C 0.060 3.940 9 H 0.120 0.880 10 C -0.008 4.008 11 N -0.396 5.396 12 C 0.320 3.680 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.187 4.187 25 C -0.214 4.214 26 C -0.218 4.218 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.244 0.756 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.964 20.636 10.600 27.607 hybrid contribution 1.150 1.306 -2.090 2.719 sum -13.814 21.942 8.510 27.289 Atomic orbital electron populations 1.22427 0.91423 1.04409 1.04907 1.21219 0.96431 0.93654 0.80706 1.22187 1.03316 0.92106 1.04049 1.92961 1.90185 1.82544 1.51561 1.20841 0.79154 0.82743 0.88529 1.90688 1.41502 1.65786 1.41099 1.46128 1.60754 1.07606 1.22106 1.20818 0.97196 0.92058 0.83955 0.88047 1.21521 0.94456 0.94013 0.90775 1.45997 1.49545 1.08959 1.35075 1.20319 0.80931 0.82711 0.84081 1.90710 1.55428 1.33820 1.58991 1.23533 1.00387 1.08541 0.97982 1.85372 1.60258 0.96213 1.41432 1.22869 1.32054 0.95515 1.17935 0.90913 1.24990 0.96532 0.94438 0.97605 1.70016 1.42394 0.97684 1.40230 0.86167 0.80417 0.77975 0.80947 1.20266 1.20749 1.19668 1.22603 0.96160 0.98982 1.00940 1.22974 0.93024 1.04457 1.00901 1.23341 1.03141 0.95215 1.00113 0.89872 0.89753 0.90752 0.90633 0.90536 0.89724 0.75608 0.90678 0.89726 0.76691 0.89166 0.89214 0.92182 0.86516 0.88939 0.88866 0.89115 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 8.80 37.16 0.33 -0.54 16 2 C 0.10 0.75 1.54 -91.77 -0.14 0.61 16 3 C -0.16 -1.07 8.28 37.16 0.31 -0.76 16 4 F -0.19 -1.81 16.74 2.25 0.04 -1.78 16 5 C 0.50 4.44 5.63 -10.99 -0.06 4.38 16 6 O -0.52 -5.80 13.01 5.56 0.07 -5.73 16 7 N -0.71 -5.60 3.02 -53.81 -0.16 -5.76 16 8 C 0.16 1.40 2.59 -67.93 -0.18 1.23 16 9 H 0.10 0.99 7.58 -51.93 -0.39 0.60 16 10 C 0.12 1.22 5.21 -4.04 -0.02 1.20 16 11 N -0.74 -9.41 5.39 -60.29 -0.32 -9.74 16 12 C 0.53 9.67 7.85 -10.98 -0.09 9.59 16 13 O -0.52 -11.36 15.86 5.56 0.09 -11.27 16 14 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 15 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 20 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.17 -1.30 5.70 -90.62 -0.52 -1.82 16 25 C -0.18 -1.26 9.74 -26.69 -0.26 -1.52 16 26 C -0.18 -1.47 9.82 -26.69 -0.26 -1.73 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.34 8.00 -51.93 -0.42 -0.07 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.53 7.99 -51.93 -0.41 0.11 16 33 H 0.41 2.92 8.57 -40.82 -0.35 2.58 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 4.38 8.13 -40.82 -0.33 4.05 16 37 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 39 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.12 0.84 8.11 -51.93 -0.42 0.42 16 41 H 0.09 0.62 6.43 -51.93 -0.33 0.29 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.12 1.13 5.01 -51.93 -0.26 0.87 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -34.73 382.37 -8.19 -42.93 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.69 Total: 3.63 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.47 Total: -5.22 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.25 Total: -40.95 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.16 Total: -17.00 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.73 -8.19 -42.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720723509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.731 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds