Wall clock time and date at job start Sat Apr 11 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 110.88747 * 2 1 4 4 C 1.34774 * 119.99961 * 62.42800 * 3 2 1 5 5 O 1.21281 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99741 * 180.02562 * 4 3 2 7 7 S 1.81005 * 109.47173 * 179.97438 * 6 4 3 8 8 C 1.76189 * 100.00097 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00127 * 0.02562 * 8 7 6 10 10 C 1.38805 * 120.00013 * 180.02562 * 8 7 6 11 11 N 1.31633 * 120.00034 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47174 * 270.00277 * 12 10 8 14 14 H 1.48501 * 109.47062 * 30.00228 * 12 10 8 15 15 H 1.48490 * 109.46901 * 150.00205 * 12 10 8 16 16 C 1.55159 * 111.00471 * 123.87946 * 2 1 3 17 17 C 1.54324 * 102.93986 * 153.61207 * 16 2 1 18 18 N 1.47022 * 107.27434 * 337.80590 * 17 16 2 19 19 C 1.34774 * 125.65036 * 178.98428 * 18 17 16 20 20 O 1.21277 * 120.00336 * 179.97438 * 19 18 17 21 21 C 1.50704 * 119.99752 * 359.97438 * 19 18 17 22 22 C 1.52999 * 109.46773 * 179.97438 * 21 19 18 23 23 C 1.53003 * 109.46947 * 179.97438 * 22 21 19 24 24 F 1.39898 * 109.47146 * 180.02562 * 23 22 21 25 25 C 1.47422 * 108.70277 * 358.94314 * 18 17 16 26 26 H 1.09005 * 109.47445 * 60.69857 * 1 2 3 27 27 H 1.09001 * 109.47484 * 180.70581 * 1 2 3 28 28 H 1.09007 * 109.47091 * 300.70309 * 1 2 3 29 29 H 0.97002 * 119.99685 * 242.43301 * 3 2 1 30 30 H 1.09005 * 109.47318 * 59.99759 * 6 4 3 31 31 H 1.09002 * 109.47150 * 299.99724 * 6 4 3 32 32 H 0.97001 * 119.99662 * 179.97438 * 11 10 8 33 33 H 1.08997 * 110.72039 * 271.97652 * 16 2 1 34 34 H 1.09007 * 110.71971 * 35.07322 * 16 2 1 35 35 H 1.08995 * 109.87761 * 97.22879 * 17 16 2 36 36 H 1.09006 * 109.88159 * 218.23724 * 17 16 2 37 37 H 1.08998 * 109.46736 * 299.99400 * 21 19 18 38 38 H 1.08997 * 109.47365 * 59.99734 * 21 19 18 39 39 H 1.08995 * 109.47605 * 299.99626 * 22 21 19 40 40 H 1.09008 * 109.46978 * 60.00288 * 22 21 19 41 41 H 1.08998 * 109.47552 * 300.00495 * 23 22 21 42 42 H 1.08997 * 109.46882 * 60.00144 * 23 22 21 43 43 H 1.09001 * 110.36711 * 265.29035 * 25 18 17 44 44 H 1.09002 * 110.37148 * 142.96066 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1170 1.7979 1.9655 6 6 2.3247 3.5991 1.0343 7 16 1.8013 4.4447 2.5467 8 6 2.5465 6.0204 2.2897 9 1 3.1189 6.2073 1.3932 10 6 2.3979 7.0216 3.2396 11 7 2.9550 8.1987 3.0479 12 14 1.4072 6.6985 4.7900 13 1 -0.0144 7.0558 4.5525 14 1 1.5030 5.2605 5.1480 15 1 1.9456 7.5223 5.9020 16 6 2.0862 -0.8075 1.2026 17 6 3.4678 -1.2730 0.6968 18 7 3.4280 -1.2423 -0.7725 19 6 4.4488 -1.5605 -1.5929 20 8 4.3024 -1.4993 -2.7952 21 6 5.7724 -1.9926 -1.0160 22 6 6.7503 -2.2940 -2.1534 23 6 8.0942 -2.7321 -1.5678 24 9 8.9887 -3.0071 -2.6078 25 6 2.0861 -0.8066 -1.2000 26 1 -0.3634 0.5030 -0.8962 27 1 -0.3634 -1.0276 0.0127 28 1 -0.3634 0.5248 0.8837 29 1 2.5885 1.6832 -0.7447 30 1 1.9390 4.1348 0.1669 31 1 3.4135 3.5728 0.9905 32 1 2.8508 8.8984 3.7115 33 1 2.1916 -0.1693 2.0799 34 1 1.4454 -1.6613 1.4232 35 1 4.2424 -0.5982 1.0609 36 1 3.6670 -2.2872 1.0433 37 1 6.1748 -1.1944 -0.3924 38 1 5.6304 -2.8889 -0.4123 39 1 6.3478 -3.0924 -2.7768 40 1 6.8924 -1.3978 -2.7575 41 1 8.4967 -1.9335 -0.9446 42 1 7.9525 -3.6281 -0.9635 43 1 1.4531 -1.6706 -1.4022 44 1 2.1567 -0.1719 -2.0834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722185243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:43 Heat of formation + Delta-G solvation = -133.720093 kcal Electronic energy + Delta-G solvation = -26113.429737 eV Core-core repulsion = 22105.898500 eV Total energy + Delta-G solvation = -4007.531237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.95631 -40.91185 -39.51187 -37.67348 -34.52484 -34.27863 -32.48066 -31.97678 -30.04445 -28.89855 -28.37675 -26.22078 -25.65457 -23.49633 -22.39188 -21.49034 -19.93340 -19.33666 -17.99178 -17.57020 -17.06135 -16.74290 -16.48180 -16.22298 -15.92347 -15.41276 -15.23223 -15.03347 -14.73533 -14.61540 -14.01064 -13.80118 -13.55935 -13.37883 -13.26905 -12.97233 -12.88826 -12.82590 -12.55877 -12.38518 -12.16140 -11.93983 -11.57536 -11.53235 -11.45108 -11.30624 -11.10255 -11.07484 -11.04509 -10.65692 -10.22510 -9.90012 -9.49517 -9.12476 -9.03808 -9.03582 -8.56080 -6.96920 -6.32863 -4.05141 2.26093 2.52097 2.67063 2.85691 3.20890 3.29464 3.45373 3.57596 3.82925 4.14089 4.23869 4.25906 4.28563 4.31064 4.58300 4.59091 4.66544 4.71491 4.75537 4.84568 4.99644 5.03421 5.06161 5.09670 5.21794 5.26121 5.30383 5.40530 5.50126 5.52903 5.60652 5.65304 5.69343 5.77458 5.83115 5.92768 5.96673 6.15651 6.50525 7.09112 7.51166 7.77379 7.90129 8.37887 8.38896 9.12990 10.76419 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.013868 B = 0.002517 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.620684 B =11122.560495 C =12432.794137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 N -0.724 5.724 4 C 0.536 3.464 5 O -0.514 6.514 6 C -0.126 4.126 7 S -0.139 6.139 8 C -0.523 4.523 9 H 0.088 0.912 10 C 0.095 3.905 11 N -0.880 5.880 12 Si 0.857 3.143 13 H -0.267 1.267 14 H -0.235 1.235 15 H -0.274 1.274 16 C -0.139 4.139 17 C 0.100 3.900 18 N -0.619 5.619 19 C 0.530 3.470 20 O -0.539 6.539 21 C -0.135 4.135 22 C -0.139 4.139 23 C 0.062 3.938 24 F -0.218 7.218 25 C 0.106 3.894 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.400 0.600 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.271 0.729 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -24.128 -7.086 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.078 3.922 3 N -0.379 5.379 4 C 0.322 3.678 5 O -0.389 6.389 6 C -0.276 4.276 7 S 0.087 5.913 8 C -0.670 4.670 9 H 0.106 0.894 10 C -0.114 4.114 11 N -0.516 5.516 12 Si 0.682 3.318 13 H -0.192 1.192 14 H -0.159 1.159 15 H -0.199 1.199 16 C -0.178 4.178 17 C -0.023 4.023 18 N -0.354 5.354 19 C 0.319 3.681 20 O -0.416 6.416 21 C -0.175 4.175 22 C -0.177 4.177 23 C 0.007 3.993 24 F -0.199 7.199 25 C -0.017 4.017 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.235 0.765 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.218 -24.595 -6.186 25.458 hybrid contribution 0.738 0.858 -0.727 1.346 sum 2.956 -23.737 -6.913 24.899 Atomic orbital electron populations 1.22040 0.92471 1.02642 1.04187 1.21291 0.94507 0.81928 0.94472 1.45971 1.56218 1.11958 1.23743 1.20232 0.79485 0.86575 0.81472 1.90663 1.37511 1.76081 1.34608 1.23298 1.04410 0.94547 1.05376 1.84732 1.71302 1.12623 1.22623 1.22312 1.38378 0.95583 1.10735 0.89422 1.24727 0.94642 0.93973 0.98013 1.69940 1.42755 1.03138 1.35786 0.86726 0.80945 0.81210 0.82890 1.19212 1.15940 1.19950 1.23083 0.94639 1.00529 0.99505 1.22130 0.99380 1.01425 0.79344 1.48533 1.12233 1.67273 1.07328 1.20262 0.84759 0.76899 0.86166 1.90736 1.83027 1.53306 1.14563 1.21532 0.92718 1.03673 0.99581 1.21925 0.93467 1.04245 0.98088 1.21994 0.87885 1.02044 0.87412 1.92778 1.70070 1.95511 1.61530 1.22508 0.83347 0.98643 0.97181 0.92076 0.91576 0.89591 0.76513 0.88548 0.88607 0.91905 0.87829 0.89568 0.90983 0.91053 0.88280 0.88499 0.89965 0.89815 0.90555 0.90723 0.89749 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.62 37.16 0.32 -1.18 16 2 C 0.17 1.57 0.82 -129.67 -0.11 1.47 16 3 N -0.72 -8.20 5.17 -45.62 -0.24 -8.44 16 4 C 0.54 8.39 7.23 -10.99 -0.08 8.31 16 5 O -0.51 -9.47 12.67 5.56 0.07 -9.40 16 6 C -0.13 -2.28 6.16 36.01 0.22 -2.06 16 7 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 8 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 9 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 10 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 11 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 12 Si 0.86 21.28 27.74 -169.99 -4.72 16.56 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 16 C -0.14 -1.23 5.80 -24.90 -0.14 -1.37 16 17 C 0.10 0.71 6.48 -3.06 -0.02 0.70 16 18 N -0.62 -5.26 3.33 -170.52 -0.57 -5.82 16 19 C 0.53 5.09 7.85 -10.98 -0.09 5.01 16 20 O -0.54 -7.24 16.24 5.56 0.09 -7.15 16 21 C -0.14 -0.82 4.89 -27.88 -0.14 -0.95 16 22 C -0.14 -0.98 4.96 -26.73 -0.13 -1.11 16 23 C 0.06 0.36 7.55 37.16 0.28 0.64 16 24 F -0.22 -2.04 17.36 2.25 0.04 -2.00 16 25 C 0.11 0.91 5.94 -2.53 -0.02 0.89 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.09 1.09 6.45 -51.92 -0.34 0.75 16 29 H 0.40 3.95 8.51 -40.82 -0.35 3.60 16 30 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 31 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.10 1.21 6.37 -51.93 -0.33 0.88 16 34 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.08 0.72 8.10 -51.92 -0.42 0.30 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 44 H 0.09 0.79 7.96 -51.93 -0.41 0.38 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -34.64 377.12 -7.44 -42.08 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.91 Total: 0.69 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 0.32 Total: -1.42 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: -0.03 Total: -39.69 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.16 Total: -16.55 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.72 Total: 16.56 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.64 -7.44 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722185243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.637 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds