Wall clock time and date at job start Sat Apr 11 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47391 * 275.61461 * 3 2 1 5 5 N 1.46899 * 109.47625 * 179.97438 * 4 3 2 6 6 C 1.46896 * 111.00238 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47128 * 325.00143 * 6 5 4 8 8 C 1.52996 * 109.47247 * 205.00156 * 6 5 4 9 9 N 1.46498 * 109.47059 * 54.99642 * 8 6 5 10 10 C 1.34777 * 119.99828 * 179.72339 * 9 8 6 11 11 O 1.21283 * 120.00222 * 0.28168 * 10 9 8 12 12 C 1.50703 * 120.00290 * 180.27728 * 10 9 8 13 13 S 1.81000 * 109.47389 * 180.02562 * 12 10 9 14 14 C 1.76198 * 99.99715 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00516 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99710 * 179.97438 * 14 13 12 17 17 N 1.31634 * 120.00163 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00011 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46850 * 90.00589 * 18 16 14 20 20 H 1.48498 * 109.47329 * 210.00016 * 18 16 14 21 21 H 1.48499 * 109.47220 * 330.01003 * 18 16 14 22 22 C 1.50703 * 109.47079 * 84.99648 * 6 5 4 23 23 C 1.38234 * 119.99878 * 39.73021 * 22 6 5 24 24 C 1.38233 * 119.99864 * 179.78660 * 23 22 6 25 25 C 1.38233 * 120.00095 * 0.43495 * 24 23 22 26 26 C 1.38237 * 120.00034 * 359.81784 * 25 24 23 27 27 C 1.38232 * 119.99833 * 219.99896 * 22 6 5 28 28 H 4.44656 * 5.63306 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47619 * 155.61129 * 3 2 1 30 30 H 1.09007 * 109.47215 * 35.60903 * 3 2 1 31 31 H 1.09000 * 109.47010 * 59.99295 * 4 3 2 32 32 H 1.09003 * 109.46628 * 300.00377 * 4 3 2 33 33 H 1.00900 * 110.99654 * 303.95612 * 5 4 3 34 34 H 1.09004 * 109.47066 * 294.99910 * 8 6 5 35 35 H 1.08994 * 109.46974 * 175.00057 * 8 6 5 36 36 H 0.97001 * 120.00384 * 0.02562 * 9 8 6 37 37 H 1.08998 * 109.46954 * 300.00581 * 12 10 9 38 38 H 1.09002 * 109.46946 * 59.99717 * 12 10 9 39 39 H 0.96991 * 119.99795 * 179.97438 * 17 16 14 40 40 H 1.08003 * 119.99690 * 359.97438 * 23 22 6 41 41 H 1.08007 * 119.99595 * 180.28075 * 24 23 22 42 42 H 1.08001 * 119.99739 * 179.83577 * 25 24 23 43 43 H 1.07991 * 120.00123 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00576 * 359.97438 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1561 -0.1402 1.4356 5 7 4.6251 -0.1402 1.4356 6 6 5.1516 -0.2736 2.8004 7 1 4.4959 0.2507 3.4956 8 6 6.5548 0.3325 2.8673 9 7 6.5120 1.7170 2.3903 10 6 7.6388 2.4560 2.3646 11 8 8.6891 1.9733 2.7315 12 6 7.5937 3.8822 1.8799 13 16 9.2527 4.6010 1.9644 14 6 8.9157 6.2204 1.3573 15 1 7.9103 6.4913 1.0704 16 6 9.9422 7.1484 1.2487 17 7 11.1675 6.8184 1.5988 18 14 9.5852 8.8650 0.6044 19 1 9.2341 9.7565 1.7391 20 1 10.7880 9.3943 -0.0870 21 1 8.4495 8.8090 -0.3507 22 6 5.2159 -1.7322 3.1737 23 6 5.6210 -2.6674 2.2398 24 6 5.6843 -4.0048 2.5836 25 6 5.3339 -4.4081 3.8585 26 6 4.9238 -3.4736 4.7908 27 6 4.8646 -2.1356 4.4484 28 1 -1.0500 0.0002 0.0000 29 1 3.0090 0.9368 -0.4243 30 1 3.0097 -0.8347 -0.5984 31 1 2.7931 -1.0763 1.8599 32 1 2.7923 0.6951 2.0340 33 1 4.9866 -0.8664 0.8356 34 1 7.2313 -0.2473 2.2393 35 1 6.9098 0.3139 3.8976 36 1 5.6719 2.1033 2.0971 37 1 7.2405 3.9045 0.8489 38 1 6.9151 4.4585 2.5089 39 1 11.8848 7.4668 1.5226 40 1 5.8909 -2.3527 1.2425 41 1 6.0052 -4.7349 1.8552 42 1 5.3808 -5.4534 4.1262 43 1 4.6497 -3.7887 5.7867 44 1 4.5444 -1.4054 5.1769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732019397.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:02 Heat of formation + Delta-G solvation = 37.970773 kcal Electronic energy + Delta-G solvation = -24400.627535 eV Core-core repulsion = 20831.310598 eV Total energy + Delta-G solvation = -3569.316937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20944 -38.88788 -37.31506 -35.13500 -33.52893 -32.38062 -31.93029 -31.26616 -29.86448 -29.08097 -27.02321 -25.42281 -23.58816 -23.35200 -22.53029 -20.93240 -20.16250 -18.43833 -17.81581 -17.54779 -16.30702 -16.18232 -16.03983 -15.65795 -15.32142 -14.98027 -14.78809 -14.76057 -14.48251 -13.84939 -13.79196 -13.78043 -13.64016 -13.18373 -12.90781 -12.82657 -12.50110 -12.37492 -12.24133 -11.81354 -11.60350 -11.50973 -11.24248 -11.02549 -10.97531 -10.72245 -10.54171 -10.43142 -9.76708 -9.35506 -9.28423 -9.09708 -9.02326 -8.91450 -8.69458 -8.16687 -6.43798 -6.17024 -3.86696 0.94806 1.04150 2.45622 2.53061 3.11387 3.23448 3.25666 3.30892 3.34448 3.44087 3.60439 3.83546 4.24994 4.25343 4.39022 4.46614 4.62971 4.68916 4.77140 4.80203 4.91496 4.94944 5.12951 5.14604 5.17968 5.22093 5.30370 5.54147 5.56257 5.59312 5.63665 5.66792 5.70738 5.73505 5.92245 5.99655 6.09318 6.09856 6.16305 6.23896 6.55143 6.62035 6.75772 6.94507 7.29846 7.64366 7.91857 8.40128 8.76724 9.28299 10.90424 Molecular weight = 332.13amu Principal moments of inertia in cm(-1) A = 0.011909 B = 0.002390 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.697195 B =11710.257554 C =13651.029214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.184 4.184 3 C -0.013 4.013 4 C 0.064 3.936 5 N -0.678 5.678 6 C 0.118 3.882 7 H 0.094 0.906 8 C 0.141 3.859 9 N -0.725 5.725 10 C 0.530 3.470 11 O -0.524 6.524 12 C -0.151 4.151 13 S -0.062 6.062 14 C -0.534 4.534 15 H 0.072 0.928 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.118 4.118 27 C -0.108 4.108 28 H 0.216 0.784 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.346 0.654 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.505 -21.701 1.481 29.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.184 4.184 3 C -0.050 4.050 4 C -0.065 4.065 5 N -0.309 5.309 6 C 0.007 3.993 7 H 0.112 0.888 8 C 0.015 3.985 9 N -0.379 5.379 10 C 0.316 3.684 11 O -0.399 6.399 12 C -0.302 4.302 13 S 0.165 5.835 14 C -0.682 4.682 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.504 5.504 18 Si 0.744 3.256 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.134 4.134 25 C -0.138 4.138 26 C -0.136 4.136 27 C -0.126 4.126 28 H 0.233 0.767 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.496 -21.752 2.084 28.628 hybrid contribution -2.238 0.781 -0.785 2.497 sum -20.733 -20.970 1.299 29.518 Atomic orbital electron populations 1.24916 0.95999 1.01444 1.00405 1.23013 0.94454 1.00236 1.00726 1.18665 0.84495 1.04256 0.97550 1.21908 0.87409 1.01201 0.95972 1.60623 1.07086 1.54064 1.09165 1.20808 0.97035 0.90723 0.90709 0.88788 1.21157 0.94281 0.82992 1.00033 1.45772 1.11446 1.12530 1.68178 1.20280 0.83241 0.87497 0.77360 1.90697 1.29902 1.72704 1.46560 1.23507 1.07981 0.94853 1.03835 1.85382 1.01538 1.11120 1.85504 1.22876 0.97557 0.97746 1.50009 0.90961 1.24992 0.94453 0.99063 0.95140 1.70022 0.99995 1.35255 1.45095 0.86178 0.77962 0.82502 0.78909 1.20317 1.20796 1.19703 1.20479 1.00129 0.96043 0.94677 1.20960 0.99692 0.93136 0.99451 1.21140 0.99654 0.95843 0.96716 1.21198 0.99259 0.99645 0.93736 1.21178 0.99670 0.93206 0.99533 1.21085 0.99635 0.96177 0.95739 0.76694 0.88268 0.89711 0.94570 0.90297 0.83282 0.91607 0.91254 0.76197 0.89235 0.89408 0.92248 0.85888 0.85913 0.86082 0.85967 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.64 19.25 29.55 0.57 -1.07 16 2 C -0.18 -1.58 13.34 -37.12 -0.50 -2.07 16 3 C -0.01 -0.09 5.96 -29.52 -0.18 -0.27 16 4 C 0.06 0.45 5.43 -3.82 -0.02 0.42 16 5 N -0.68 -5.04 5.67 -107.95 -0.61 -5.65 16 6 C 0.12 0.97 2.38 -68.87 -0.16 0.81 16 7 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 8 C 0.14 1.65 5.35 -4.04 -0.02 1.63 16 9 N -0.72 -9.86 5.39 -60.30 -0.32 -10.18 16 10 C 0.53 10.10 7.85 -10.98 -0.09 10.01 16 11 O -0.52 -12.15 15.86 5.55 0.09 -12.07 16 12 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 13 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 14 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 15 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 16 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 18 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 C -0.11 -0.92 4.71 -104.62 -0.49 -1.41 16 23 C -0.11 -0.90 9.12 -39.58 -0.36 -1.26 16 24 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.11 -0.86 9.67 -39.58 -0.38 -1.24 16 28 H 0.22 0.98 7.80 -54.09 -0.42 0.56 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.27 8.00 -51.93 -0.42 -0.15 16 32 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.35 2.39 6.34 -39.29 -0.25 2.14 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.59 8.14 -40.82 -0.33 4.26 16 37 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.12 0.83 6.50 -52.48 -0.34 0.49 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.83 8.04 -52.49 -0.42 0.40 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -35.46 395.63 -10.14 -45.60 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.35 Total: 3.60 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.41 Total: -14.23 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.20 Total: -41.55 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.46 -10.14 -45.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732019397.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.573 kcal (2) G-P(sol) polarization free energy of solvation -35.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds