Wall clock time and date at job start Sat Apr 11 2020 03:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46711 * 2 1 4 4 H 1.08996 * 109.47111 * 304.99687 * 3 2 1 5 5 F 1.39895 * 109.47232 * 65.00430 * 3 2 1 6 6 C 1.50711 * 109.46544 * 185.00107 * 3 2 1 7 7 O 1.21270 * 120.00254 * 314.99737 * 6 3 2 8 8 N 1.34780 * 119.99583 * 135.00474 * 6 3 2 9 9 C 1.46497 * 119.99653 * 179.97438 * 8 6 3 10 10 C 1.53786 * 113.61643 * 105.85894 * 9 8 6 11 11 C 1.53962 * 87.01719 * 89.22773 * 10 9 8 12 12 C 1.52994 * 113.66220 * 139.93548 * 11 10 9 13 13 N 1.46498 * 109.47402 * 87.44478 * 12 11 10 14 14 C 1.34776 * 120.00338 * 179.97438 * 13 12 11 15 15 O 1.21282 * 119.99996 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00299 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47328 * 179.97438 * 16 14 13 18 18 C 1.76202 * 100.00230 * 180.02562 * 17 16 14 19 19 H 1.08004 * 119.99548 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00058 * 180.02562 * 18 17 16 21 21 N 1.31631 * 119.99701 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00278 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46964 * 90.00328 * 22 20 18 24 24 H 1.48493 * 109.47642 * 210.00576 * 22 20 18 25 25 H 1.48506 * 109.46922 * 330.00546 * 22 20 18 26 26 C 1.53781 * 113.61305 * 203.46742 * 9 8 6 27 27 H 1.08998 * 109.46836 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46937 * 299.99899 * 1 2 3 29 29 H 1.08998 * 109.47401 * 60.00048 * 1 2 3 30 30 H 1.09003 * 109.46937 * 240.00101 * 2 1 3 31 31 H 1.08998 * 109.47401 * 119.99952 * 2 1 3 32 32 H 0.96995 * 120.00200 * 359.97438 * 8 6 3 33 33 H 1.09002 * 112.84935 * 334.66222 * 9 8 6 34 34 H 1.08993 * 113.61491 * 203.74894 * 10 9 8 35 35 H 1.09000 * 113.61138 * 334.65232 * 10 9 8 36 36 H 1.09002 * 113.61454 * 270.79954 * 11 10 9 37 37 H 1.09005 * 109.46709 * 207.43538 * 12 11 10 38 38 H 1.08998 * 109.47556 * 327.43829 * 12 11 10 39 39 H 0.97001 * 120.00130 * 359.97438 * 13 12 11 40 40 H 1.09002 * 109.47398 * 299.99962 * 16 14 13 41 41 H 1.09007 * 109.47078 * 59.99913 * 16 14 13 42 42 H 0.97004 * 119.99511 * 179.97438 * 21 20 18 43 43 H 1.09001 * 113.61695 * 25.34675 * 26 9 8 44 44 H 1.08996 * 113.61580 * 156.16953 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5420 1.4443 -0.1239 7 8 4.2064 0.6812 0.5445 8 7 4.1467 2.2942 -0.9775 9 6 5.6067 2.2963 -1.0975 10 6 6.1193 1.6469 -2.3938 11 6 6.0130 3.0407 -3.0391 12 6 7.1737 3.3725 -3.9789 13 7 6.8685 2.8805 -5.3246 14 6 7.7531 3.0616 -6.3252 15 8 8.8017 3.6324 -6.1116 16 6 7.4393 2.5550 -7.7093 17 16 8.8118 2.9489 -8.8215 18 6 8.1951 2.2639 -10.3232 19 1 7.2283 1.7828 -10.3403 20 6 8.9522 2.3417 -11.4839 21 7 8.4916 1.8295 -12.6056 22 14 10.6246 3.1732 -11.4543 23 1 11.6710 2.1690 -11.1351 24 1 10.9031 3.7727 -12.7840 25 1 10.6293 4.2389 -10.4201 26 6 6.1795 3.6223 -1.6252 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.6152 2.9044 -1.5123 33 1 6.1057 1.9317 -0.1996 34 1 7.1416 1.2759 -2.3218 35 1 5.4312 0.9152 -2.8172 36 1 5.0381 3.2434 -3.4826 37 1 7.3179 4.4525 -4.0110 38 1 8.0836 2.8951 -3.6152 39 1 6.0297 2.4243 -5.4956 40 1 7.2958 1.4750 -7.6771 41 1 6.5290 3.0318 -8.0730 42 1 9.0206 1.8842 -13.4169 43 1 5.5401 4.4830 -1.4290 44 1 7.2179 3.7931 -1.3415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734680536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:10 Heat of formation + Delta-G solvation = -117.581446 kcal Electronic energy + Delta-G solvation = -24972.115298 eV Core-core repulsion = 20965.283885 eV Total energy + Delta-G solvation = -4006.831412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.42099 -40.83653 -39.45011 -38.60798 -34.85025 -34.54737 -33.47736 -32.45802 -30.13205 -28.54678 -27.07662 -26.21258 -25.61825 -23.43208 -22.50252 -21.28476 -20.60204 -19.70074 -18.43708 -17.87866 -17.31250 -16.72839 -16.42846 -16.22394 -15.88294 -15.62366 -15.23087 -15.02483 -14.98330 -14.56934 -14.26591 -14.16423 -13.89162 -13.51793 -13.40735 -13.07449 -12.95170 -12.85614 -12.81320 -12.53160 -12.45814 -11.89530 -11.67368 -11.50201 -11.39903 -11.29405 -11.14026 -11.02450 -10.74187 -10.59872 -10.31074 -9.87461 -9.65764 -9.54072 -9.04255 -8.98413 -8.52344 -6.94067 -6.30916 -4.02806 1.84299 2.33010 2.74070 2.94702 3.27769 3.32417 3.48921 3.61638 3.79173 3.88439 3.97274 4.02531 4.11931 4.27788 4.31442 4.36033 4.36520 4.71570 4.74843 4.85484 4.87067 5.07176 5.08184 5.10378 5.23549 5.28798 5.29422 5.31431 5.37137 5.46773 5.51289 5.60085 5.65074 5.66610 5.75054 5.78062 5.98099 6.04993 6.49638 6.78246 7.49826 7.57054 7.92122 8.39360 8.46005 9.15292 10.78260 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.023201 B = 0.001740 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.545210 B =16091.788471 C =16962.202701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.142 4.142 3 C 0.084 3.916 4 H 0.101 0.899 5 F -0.189 7.189 6 C 0.494 3.506 7 O -0.516 6.516 8 N -0.704 5.704 9 C 0.115 3.885 10 C -0.144 4.144 11 C -0.124 4.124 12 C 0.131 3.869 13 N -0.736 5.736 14 C 0.529 3.471 15 O -0.520 6.520 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.134 4.134 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.404 0.596 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.078 0.922 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.908 0.401 26.501 30.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C 0.044 3.956 4 H 0.119 0.881 5 F -0.170 7.170 6 C 0.278 3.722 7 O -0.390 6.390 8 N -0.356 5.356 9 C 0.010 3.990 10 C -0.183 4.183 11 C -0.143 4.143 12 C 0.007 3.993 13 N -0.390 5.390 14 C 0.315 3.685 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.172 4.172 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.239 0.761 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.232 0.768 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.641 0.780 27.195 30.435 hybrid contribution -1.238 -0.275 -0.931 1.573 sum -14.879 0.506 26.265 30.191 Atomic orbital electron populations 1.21782 0.93923 1.02887 1.02572 1.22008 0.97485 0.93280 1.05206 1.21642 0.91645 0.96602 0.85680 0.88135 1.92895 1.91996 1.83875 1.48223 1.21030 0.90452 0.80758 0.79959 1.90753 1.66040 1.38701 1.43507 1.45759 1.07449 1.39426 1.42954 1.21930 0.79886 0.97703 0.99499 1.23558 1.02741 0.96453 0.95546 1.22910 0.99400 0.97097 0.94855 1.21277 0.96937 0.99753 0.81305 1.45946 1.22250 1.61775 1.09074 1.20286 0.83500 0.78728 0.85950 1.90703 1.24439 1.40891 1.83438 1.23278 1.05139 1.04541 0.94534 1.84798 1.24415 1.77579 1.04793 1.22315 1.08466 1.43183 0.92979 0.89397 1.24717 0.98189 0.94175 0.94256 1.69941 1.38285 1.43557 0.99875 0.86728 0.84039 0.81780 0.79266 1.19202 1.19927 1.15935 1.23292 1.02823 0.96536 0.94579 0.91525 0.91886 0.92217 0.89637 0.89365 0.76123 0.87660 0.88481 0.90771 0.88571 0.91418 0.91308 0.76760 0.88539 0.88512 0.91933 0.90375 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.83 37.16 0.37 -0.26 16 2 C -0.14 -0.76 5.41 -26.73 -0.14 -0.90 16 3 C 0.08 0.47 3.77 -27.88 -0.11 0.37 16 4 H 0.10 0.23 7.99 -51.93 -0.42 -0.18 16 5 F -0.19 -1.53 16.75 2.25 0.04 -1.49 16 6 C 0.49 3.85 7.17 -10.98 -0.08 3.77 16 7 O -0.52 -6.16 16.23 5.57 0.09 -6.07 16 8 N -0.70 -3.79 5.27 -53.01 -0.28 -4.06 16 9 C 0.11 0.71 4.29 -67.12 -0.29 0.42 16 10 C -0.14 -0.92 7.45 -25.82 -0.19 -1.11 16 11 C -0.12 -0.72 3.64 -89.71 -0.33 -1.05 16 12 C 0.13 1.24 5.51 -4.05 -0.02 1.22 16 13 N -0.74 -8.46 5.56 -60.30 -0.33 -8.79 16 14 C 0.53 9.02 7.85 -10.99 -0.09 8.94 16 15 O -0.52 -10.97 15.86 5.56 0.09 -10.88 16 16 C -0.12 -2.33 6.16 36.00 0.22 -2.11 16 17 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 18 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 19 H 0.09 2.61 8.03 -52.48 -0.42 2.19 16 20 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.37 13.97 55.49 0.78 -25.59 16 22 Si 0.86 21.65 27.74 -169.99 -4.71 16.94 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.24 -5.94 6.74 56.52 0.38 -5.55 16 26 C -0.13 -0.67 7.38 -25.92 -0.19 -0.86 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.29 7.94 -51.93 -0.41 -0.12 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.40 1.06 8.60 -40.82 -0.35 0.71 16 33 H 0.11 0.83 7.50 -51.93 -0.39 0.44 16 34 H 0.10 0.67 7.90 -51.93 -0.41 0.26 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.72 7.85 -51.93 -0.41 0.32 16 39 H 0.40 3.44 8.47 -40.82 -0.35 3.10 16 40 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.10 1.68 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.50 8.10 -51.93 -0.42 0.08 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -36.64 386.89 -8.09 -44.73 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.95 Total: -1.55 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.63 Total: -3.49 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.16 Total: -38.45 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.18 Total: -16.95 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.94 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.64 -8.09 -44.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734680536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.854 kcal (2) G-P(sol) polarization free energy of solvation -36.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds