Wall clock time and date at job start Sat Apr 11 2020 03:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47304 * 2 1 4 4 C 1.53007 * 109.47207 * 120.00306 * 2 1 3 5 5 H 1.09001 * 109.46738 * 304.91163 * 4 2 1 6 6 F 1.39903 * 109.46949 * 184.91443 * 4 2 1 7 7 C 1.50690 * 109.47126 * 64.91088 * 4 2 1 8 8 O 1.21287 * 120.00136 * 65.94181 * 7 4 2 9 9 N 1.34777 * 119.99961 * 245.94074 * 7 4 2 10 10 C 1.47581 * 134.49514 * 5.17300 * 9 7 4 11 11 C 1.53943 * 86.11803 * 155.36090 * 10 9 7 12 12 C 1.47586 * 134.49031 * 185.17860 * 9 7 4 13 13 H 1.09001 * 113.87390 * 90.32377 * 12 9 7 14 14 C 1.53004 * 113.76847 * 318.93388 * 12 9 7 15 15 N 1.46505 * 109.46686 * 81.22439 * 14 12 9 16 16 C 1.34774 * 119.99670 * 175.98751 * 15 14 12 17 17 O 1.21274 * 120.00179 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99849 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.47208 * 180.02562 * 18 16 15 20 20 C 1.76196 * 100.00142 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99998 * 0.02562 * 20 19 18 22 22 C 1.38795 * 120.00111 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99855 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99949 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47026 * 60.00470 * 24 22 20 26 26 H 1.48506 * 109.46944 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47324 * 300.00134 * 24 22 20 28 28 H 1.08997 * 109.46829 * 300.00202 * 1 2 3 29 29 H 1.08996 * 109.47174 * 59.99760 * 1 2 3 30 30 H 1.09000 * 109.47152 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46942 * 240.00346 * 2 1 3 32 32 H 1.09006 * 109.47009 * 185.03190 * 3 2 1 33 33 H 1.08998 * 109.46880 * 305.02726 * 3 2 1 34 34 H 1.08998 * 109.47040 * 65.03417 * 3 2 1 35 35 H 1.09002 * 113.76570 * 41.05801 * 10 9 7 36 36 H 1.09001 * 113.76578 * 269.66412 * 10 9 7 37 37 H 1.08999 * 113.74459 * 269.25842 * 11 10 9 38 38 H 1.09001 * 113.74103 * 137.95403 * 11 10 9 39 39 H 1.08997 * 109.46973 * 321.22259 * 14 12 9 40 40 H 1.08997 * 109.46746 * 201.21964 * 14 12 9 41 41 H 0.96993 * 120.00128 * 355.98647 * 15 14 12 42 42 H 1.09000 * 109.46542 * 60.00570 * 18 16 15 43 43 H 1.08995 * 109.46935 * 300.00522 * 18 16 15 44 44 H 0.97006 * 120.00105 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6066 -0.2608 2.1370 6 9 3.4345 -0.6243 1.3071 7 6 1.6395 -2.1728 1.1899 8 8 2.1056 -2.8961 0.3351 9 7 0.7633 -2.6673 2.0867 10 6 -0.0526 -2.0807 3.1674 11 6 -0.9876 -3.2884 2.9748 12 6 0.2346 -4.0131 2.3823 13 1 0.8185 -4.5643 3.1195 14 6 -0.0834 -4.8388 1.1340 15 7 1.1494 -5.4404 0.6195 16 6 1.1008 -6.2803 -0.4334 17 8 0.0367 -6.5376 -0.9552 18 6 2.3689 -6.8988 -0.9631 19 16 1.9767 -7.9694 -2.3688 20 6 3.5919 -8.5434 -2.7763 21 1 4.4439 -8.2116 -2.2015 22 6 3.7692 -9.4228 -3.8353 23 7 2.7308 -9.8276 -4.5356 24 14 5.4818 -10.0308 -4.2678 25 1 6.0604 -10.7493 -3.1042 26 1 5.4011 -10.9527 -5.4293 27 1 6.3452 -8.8733 -4.6142 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1264 1.4438 -0.0901 33 1 1.6051 1.9817 -0.8415 34 1 1.7522 1.9296 0.9316 35 1 -0.5084 -1.1259 2.9049 36 1 0.4480 -2.0626 4.1355 37 1 -1.7866 -3.1143 2.2541 38 1 -1.3438 -3.7211 3.9096 39 1 -0.5178 -4.1921 0.3717 40 1 -0.7925 -5.6259 1.3901 41 1 2.0004 -5.2343 1.0366 42 1 2.8411 -7.4885 -0.1774 43 1 3.0500 -6.1113 -1.2854 44 1 2.8547 -10.4419 -5.2760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738640156.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:30 Heat of formation + Delta-G solvation = -95.338878 kcal Electronic energy + Delta-G solvation = -26608.166386 eV Core-core repulsion = 22602.299484 eV Total energy + Delta-G solvation = -4005.866902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.18498 -40.90691 -38.83019 -38.12375 -35.94870 -34.24017 -32.34650 -30.95033 -29.85078 -27.88769 -27.58804 -27.34142 -25.39663 -23.51278 -22.72331 -20.95101 -20.22088 -19.38822 -18.13180 -17.65645 -16.93143 -16.81196 -16.29716 -15.99521 -15.81143 -15.08524 -15.04594 -14.72828 -14.64495 -14.33109 -13.96132 -13.85271 -13.39689 -13.17207 -13.07540 -13.00023 -12.77653 -12.63388 -12.59015 -12.49189 -12.38117 -11.97290 -11.61258 -11.58057 -11.52362 -11.41694 -11.02921 -10.97105 -10.95779 -10.68900 -9.88919 -9.73359 -9.24630 -9.16487 -8.98144 -8.70005 -8.13580 -6.39675 -6.13394 -3.82719 2.07392 2.23274 3.14467 3.28080 3.29885 3.33086 3.38508 3.64977 3.79453 3.94475 3.97350 4.19746 4.29023 4.34480 4.43380 4.54621 4.63619 4.74364 4.80594 4.82666 5.01215 5.05427 5.09489 5.20066 5.21416 5.22344 5.31464 5.36595 5.41721 5.51288 5.62108 5.64773 5.79736 5.81733 5.82952 5.92653 6.06109 6.31701 6.76462 7.18780 7.67833 7.70638 7.89695 8.43830 8.78560 9.31740 10.94097 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.002729 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.022613 B =10257.205145 C =11325.848723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.146 4.146 4 C 0.093 3.907 5 H 0.095 0.905 6 F -0.186 7.186 7 C 0.511 3.489 8 O -0.495 6.495 9 N -0.642 5.642 10 C 0.096 3.904 11 C -0.141 4.141 12 C 0.123 3.877 13 H 0.104 0.896 14 C 0.124 3.876 15 N -0.725 5.725 16 C 0.536 3.464 17 O -0.526 6.526 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.399 0.601 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.146 23.465 20.595 32.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.053 3.947 5 H 0.113 0.887 6 F -0.167 7.167 7 C 0.297 3.703 8 O -0.367 6.367 9 N -0.381 5.381 10 C -0.026 4.026 11 C -0.180 4.180 12 C 0.020 3.980 13 H 0.121 0.879 14 C -0.001 4.001 15 N -0.379 5.379 16 C 0.323 3.677 17 O -0.401 6.401 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.505 5.505 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.234 0.766 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.538 22.616 18.932 30.705 hybrid contribution 2.951 0.114 0.639 3.022 sum -5.587 22.730 19.571 30.510 Atomic orbital electron populations 1.21817 0.93427 1.02576 1.02737 1.21663 0.97291 0.97417 0.97282 1.21806 1.02044 0.94147 1.02344 1.21535 0.77725 0.93685 1.01740 0.88723 1.92887 1.29361 1.96708 1.97735 1.20670 0.78210 0.89965 0.81417 1.90850 1.51910 1.59862 1.34125 1.50305 1.43680 1.10863 1.33215 1.23264 0.89934 0.98668 0.90743 1.23548 0.96549 0.95361 1.02495 1.23207 0.93104 0.85155 0.96499 0.87856 1.21358 0.88436 0.96433 0.93872 1.45793 1.09588 1.48110 1.34386 1.20207 0.90876 0.77819 0.78829 1.90674 1.31209 1.60744 1.57474 1.23500 0.97947 1.03732 1.04946 1.85301 1.12556 1.53690 1.31916 1.22847 0.93333 1.32503 1.19515 0.91032 1.24981 0.98007 0.95457 0.95152 1.70017 1.29616 1.31696 1.19137 0.86231 0.82708 0.78620 0.77979 1.19971 1.20842 1.19944 0.92242 0.91201 0.92175 0.88713 0.91718 0.91541 0.92411 0.89609 0.89201 0.88181 0.88857 0.91448 0.90069 0.76647 0.89512 0.89163 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.01 37.16 0.33 -0.66 16 2 C -0.12 -0.98 2.72 -90.61 -0.25 -1.23 16 3 C -0.15 -0.97 8.95 37.16 0.33 -0.64 16 4 C 0.09 0.84 3.29 -27.88 -0.09 0.74 16 5 H 0.09 0.54 7.40 -51.93 -0.38 0.16 16 6 F -0.19 -2.19 16.45 2.25 0.04 -2.15 16 7 C 0.51 5.81 6.06 -10.99 -0.07 5.74 16 8 O -0.50 -8.00 15.36 5.55 0.09 -7.91 16 9 N -0.64 -5.21 3.49 -171.19 -0.60 -5.81 16 10 C 0.10 0.35 8.11 -2.98 -0.02 0.32 16 11 C -0.14 -0.55 7.86 -25.80 -0.20 -0.76 16 12 C 0.12 0.94 4.29 -66.86 -0.29 0.66 16 13 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 14 C 0.12 1.51 5.20 -4.04 -0.02 1.49 16 15 N -0.72 -11.41 4.42 -60.29 -0.27 -11.67 16 16 C 0.54 11.22 7.85 -10.98 -0.09 11.13 16 17 O -0.53 -12.82 15.86 5.56 0.09 -12.73 16 18 C -0.15 -3.41 6.16 36.01 0.22 -3.19 16 19 S -0.06 -1.77 20.57 -107.50 -2.21 -3.98 16 20 C -0.53 -16.03 9.50 30.94 0.29 -15.73 16 21 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 22 C 0.07 2.17 5.49 -17.43 -0.10 2.08 16 23 N -0.87 -27.13 13.22 55.49 0.73 -26.40 16 24 Si 0.92 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 7.38 -51.93 -0.38 0.11 16 31 H 0.09 1.04 8.09 -51.92 -0.42 0.62 16 32 H 0.06 0.49 7.85 -51.93 -0.41 0.08 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.10 0.42 8.10 -51.93 -0.42 -0.01 16 38 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.40 5.81 7.73 -40.82 -0.32 5.49 16 42 H 0.09 1.81 8.14 -51.92 -0.42 1.38 16 43 H 0.09 2.01 8.14 -51.92 -0.42 1.59 16 44 H 0.27 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -39.06 385.10 -8.24 -47.30 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.95 Total: 0.31 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 0.06 Total: -0.04 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.13 Total: -43.87 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.17 Total: -20.64 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.06 -8.24 -47.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738640156.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.041 kcal (2) G-P(sol) polarization free energy of solvation -39.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds