Wall clock time and date at job start Sat Apr 11 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47358 * 2 1 4 4 C 1.53001 * 109.47535 * 120.00455 * 2 1 3 5 5 H 1.09004 * 109.46782 * 305.14368 * 4 2 1 6 6 F 1.39890 * 109.47389 * 185.14629 * 4 2 1 7 7 C 1.50700 * 109.47254 * 65.13979 * 4 2 1 8 8 O 1.21285 * 119.99641 * 64.86196 * 7 4 2 9 9 N 1.34772 * 120.00474 * 244.86635 * 7 4 2 10 10 C 1.47932 * 134.62803 * 4.40960 * 9 7 4 11 11 C 1.53952 * 86.11904 * 204.70614 * 10 9 7 12 12 C 1.47582 * 134.49285 * 184.50842 * 9 7 4 13 13 H 1.08997 * 113.76365 * 269.65214 * 12 9 7 14 14 C 1.52991 * 113.77188 * 40.93986 * 12 9 7 15 15 N 1.46501 * 109.47216 * 281.08932 * 14 12 9 16 16 C 1.34777 * 120.00246 * 184.45759 * 15 14 12 17 17 O 1.21282 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00339 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47378 * 179.97438 * 18 16 15 20 20 C 1.76206 * 99.99922 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99774 * 359.97438 * 20 19 18 22 22 C 1.38795 * 119.99693 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00122 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46990 * 90.00139 * 24 22 20 26 26 H 1.48499 * 109.47350 * 210.00455 * 24 22 20 27 27 H 1.48506 * 109.46884 * 330.00086 * 24 22 20 28 28 H 1.09005 * 109.46733 * 299.99669 * 1 2 3 29 29 H 1.08998 * 109.47522 * 59.99452 * 1 2 3 30 30 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46733 * 240.00331 * 2 1 3 32 32 H 1.09000 * 109.47168 * 305.02194 * 3 2 1 33 33 H 1.08998 * 109.46742 * 65.02311 * 3 2 1 34 34 H 1.08996 * 109.47193 * 185.01908 * 3 2 1 35 35 H 1.08999 * 113.76639 * 90.40814 * 10 9 7 36 36 H 1.08995 * 113.87663 * 319.02201 * 10 9 7 37 37 H 1.08997 * 113.73858 * 222.05084 * 11 10 9 38 38 H 1.09002 * 113.73529 * 90.74382 * 11 10 9 39 39 H 1.08999 * 109.47592 * 41.08617 * 14 12 9 40 40 H 1.08999 * 109.47240 * 161.08802 * 14 12 9 41 41 H 0.96998 * 119.99814 * 4.45537 * 15 14 12 42 42 H 1.08998 * 109.46751 * 299.99973 * 18 16 15 43 43 H 1.09005 * 109.47130 * 59.99488 * 18 16 15 44 44 H 0.97003 * 119.99666 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6034 -0.2635 2.1368 6 9 3.4339 -0.6198 1.3098 7 6 1.6444 -2.1741 1.1871 8 8 2.0994 -2.8900 0.3202 9 7 0.7849 -2.6779 2.0948 10 6 -0.0083 -2.1055 3.2045 11 6 0.0238 -3.5176 3.8170 12 6 0.2572 -4.0258 2.3826 13 1 -0.6613 -4.2618 1.8454 14 6 1.3079 -5.1335 2.2842 15 7 1.5312 -5.4710 0.8762 16 6 2.3533 -6.4877 0.5491 17 8 2.9086 -7.1228 1.4204 18 6 2.5836 -6.8345 -0.8992 19 16 3.7278 -8.2325 -1.0104 20 6 3.8151 -8.4180 -2.7605 21 1 3.2493 -7.7589 -3.4022 22 6 4.6110 -9.4112 -3.3141 23 7 5.3002 -10.2148 -2.5319 24 14 4.7031 -9.6084 -5.1695 25 1 5.8083 -8.7717 -5.7019 26 1 4.9553 -11.0330 -5.5040 27 1 3.4186 -9.1771 -5.7774 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8932 -0.5138 -0.8901 32 1 1.6051 1.9817 -0.8416 33 1 1.7520 1.9296 0.9316 34 1 3.1263 1.4438 -0.0899 35 1 -1.0048 -1.7775 2.9087 36 1 0.5281 -1.3598 3.7913 37 1 -0.9281 -3.8321 4.2446 38 1 0.8681 -3.6868 4.4853 39 1 2.2420 -4.7888 2.7277 40 1 0.9562 -6.0163 2.8181 41 1 1.0874 -4.9628 0.1794 42 1 1.6348 -7.1032 -1.3636 43 1 3.0101 -5.9744 -1.4155 44 1 5.8561 -10.9091 -2.9189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738640158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:33 Heat of formation + Delta-G solvation = -95.340734 kcal Electronic energy + Delta-G solvation = -26568.663058 eV Core-core repulsion = 22562.796075 eV Total energy + Delta-G solvation = -4005.866983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.15701 -40.88553 -38.81935 -38.14425 -35.97578 -34.22600 -32.34336 -30.93766 -29.85088 -27.89012 -27.60700 -27.39930 -25.39459 -23.50862 -22.74880 -20.90082 -20.20712 -19.43075 -18.17496 -17.68759 -16.94268 -16.67902 -16.30204 -16.01445 -15.89460 -15.10819 -14.92785 -14.72621 -14.69711 -14.34857 -13.96954 -13.85110 -13.39639 -13.20409 -13.09338 -12.99454 -12.76581 -12.67431 -12.56268 -12.52588 -12.37062 -11.97722 -11.63909 -11.60346 -11.54213 -11.42030 -11.05130 -10.99272 -10.93541 -10.68062 -9.90194 -9.72181 -9.23399 -9.18688 -8.98546 -8.69132 -8.12479 -6.39118 -6.13168 -3.82348 2.12464 2.16656 3.15302 3.27946 3.29322 3.33962 3.39415 3.64746 3.79475 3.91438 3.97771 4.17735 4.29115 4.31908 4.43967 4.54632 4.60824 4.72952 4.80220 4.83414 4.99815 5.01986 5.07052 5.16628 5.21702 5.22277 5.29933 5.33054 5.37566 5.51282 5.57307 5.62655 5.76351 5.78731 5.81341 5.92596 6.06771 6.32450 6.77793 7.17781 7.68300 7.69429 7.92800 8.44321 8.79747 9.32051 10.94393 Molecular weight = 332.14amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.002771 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.338659 B =10103.132867 C =11412.773651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.093 3.907 5 H 0.095 0.905 6 F -0.185 7.185 7 C 0.512 3.488 8 O -0.499 6.499 9 N -0.642 5.642 10 C 0.098 3.902 11 C -0.142 4.142 12 C 0.124 3.876 13 H 0.103 0.897 14 C 0.122 3.878 15 N -0.725 5.725 16 C 0.535 3.465 17 O -0.526 6.526 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.401 0.599 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.801 25.197 12.857 32.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.204 4.204 4 C 0.054 3.946 5 H 0.113 0.887 6 F -0.166 7.166 7 C 0.299 3.701 8 O -0.371 6.371 9 N -0.381 5.381 10 C -0.025 4.025 11 C -0.180 4.180 12 C 0.021 3.979 13 H 0.121 0.879 14 C -0.004 4.004 15 N -0.380 5.380 16 C 0.322 3.678 17 O -0.401 6.401 18 C -0.300 4.300 19 S 0.165 5.835 20 C -0.681 4.681 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.237 0.763 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.303 23.683 13.685 31.342 hybrid contribution -0.690 0.972 -2.508 2.777 sum -15.993 24.655 11.177 31.441 Atomic orbital electron populations 1.21808 0.93523 1.02346 1.02792 1.21655 0.97157 0.97488 0.97273 1.21805 1.02160 0.94076 1.02349 1.21535 0.77924 0.93513 1.01663 0.88737 1.92899 1.29322 1.96661 1.97700 1.20667 0.79340 0.89665 0.80437 1.90808 1.53051 1.59888 1.33383 1.50403 1.43634 1.11122 1.32901 1.23314 0.95804 0.97615 0.85760 1.23552 1.04254 0.94666 0.95556 1.23193 0.96509 0.83459 0.94754 0.87906 1.21384 0.97846 0.96480 0.84643 1.45854 1.49689 1.35232 1.07272 1.20230 0.77670 0.78881 0.91063 1.90677 1.47758 1.51111 1.50575 1.23492 1.05653 1.06096 0.94801 1.85318 1.55236 1.34048 1.08937 1.22884 1.33020 1.20624 0.91564 0.90989 1.24987 0.94696 0.94824 0.99135 1.70028 1.27242 1.18067 1.35107 0.86171 0.78581 0.77470 0.83291 1.20291 1.20795 1.19719 0.92169 0.91248 0.92397 0.88723 0.91569 0.92367 0.91626 0.89049 0.89648 0.88811 0.88162 0.91537 0.89932 0.76346 0.89523 0.89148 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.01 37.15 0.33 -0.50 16 2 C -0.12 -0.91 2.72 -90.62 -0.25 -1.15 16 3 C -0.15 -0.93 8.95 37.16 0.33 -0.59 16 4 C 0.09 0.85 3.30 -27.88 -0.09 0.75 16 5 H 0.09 0.55 7.15 -51.93 -0.37 0.18 16 6 F -0.19 -2.30 16.45 2.25 0.04 -2.27 16 7 C 0.51 5.84 6.03 -10.99 -0.07 5.77 16 8 O -0.50 -7.97 15.07 5.55 0.08 -7.88 16 9 N -0.64 -5.23 3.51 -170.06 -0.60 -5.83 16 10 C 0.10 0.35 8.25 -2.78 -0.02 0.32 16 11 C -0.14 -0.58 7.86 -25.79 -0.20 -0.78 16 12 C 0.12 0.96 4.26 -66.87 -0.29 0.67 16 13 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 14 C 0.12 1.52 5.36 -4.05 -0.02 1.50 16 15 N -0.73 -11.60 4.47 -60.30 -0.27 -11.87 16 16 C 0.54 11.34 7.85 -10.99 -0.09 11.25 16 17 O -0.53 -12.98 15.86 5.56 0.09 -12.89 16 18 C -0.15 -3.42 6.16 36.01 0.22 -3.20 16 19 S -0.06 -1.80 20.57 -107.50 -2.21 -4.01 16 20 C -0.53 -16.03 9.50 30.94 0.29 -15.73 16 21 H 0.07 2.07 7.80 -52.49 -0.41 1.66 16 22 C 0.07 2.16 5.49 -17.43 -0.10 2.06 16 23 N -0.87 -27.20 13.22 55.49 0.73 -26.46 16 24 Si 0.92 22.32 29.55 -169.99 -5.02 17.30 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.38 7.38 -51.93 -0.38 0.00 16 31 H 0.09 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.49 7.84 -51.93 -0.41 0.08 16 35 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.09 0.20 7.80 -51.93 -0.41 -0.21 16 37 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 38 H 0.10 0.46 8.10 -51.93 -0.42 0.04 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.40 5.93 7.23 -40.82 -0.30 5.63 16 42 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.09 2.03 8.14 -51.91 -0.42 1.60 16 44 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -39.37 384.00 -8.20 -47.57 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.90 Total: 0.19 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 0.06 Total: 0.37 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.13 Total: -44.16 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.17 Total: -20.77 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.21 Total: -4.01 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.37 -8.20 -47.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738640158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.768 kcal (2) G-P(sol) polarization free energy of solvation -39.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds