Wall clock time and date at job start Sat Apr 11 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00335 * 2 1 4 4 H 1.48502 * 109.47389 * 240.00255 * 3 2 1 5 5 H 1.48499 * 109.47223 * 119.99855 * 3 2 1 6 6 H 1.48500 * 109.47095 * 0.02562 * 3 2 1 7 7 C 1.38816 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00318 * 207.26377 * 7 2 1 9 9 N 1.36933 * 119.99961 * 27.26821 * 7 2 1 10 10 C 1.47425 * 125.64884 * 13.32323 * 9 7 2 11 11 C 1.55140 * 104.72236 * 155.81526 * 10 9 7 12 12 H 1.08992 * 110.90138 * 155.27569 * 11 10 9 13 13 O 1.42899 * 111.22399 * 279.18013 * 11 10 9 14 14 C 1.55163 * 101.48282 * 37.29725 * 11 10 9 15 15 H 1.08996 * 110.71881 * 82.69635 * 14 11 10 16 16 C 1.52995 * 110.86789 * 205.89415 * 14 11 10 17 17 N 1.46506 * 109.46858 * 180.02562 * 16 14 11 18 18 C 1.34779 * 119.99895 * 180.02562 * 17 16 14 19 19 O 1.21578 * 120.00156 * 0.02562 * 18 17 16 20 20 C 1.47604 * 119.99729 * 180.02562 * 18 17 16 21 21 C 1.39753 * 120.26396 * 359.97438 * 20 18 17 22 22 C 1.37478 * 120.19656 * 180.13837 * 21 20 18 23 23 C 1.39585 * 120.43050 * 359.97438 * 22 21 20 24 24 C 1.39183 * 119.10534 * 359.72563 * 23 22 21 25 25 C 1.37306 * 120.93658 * 0.17834 * 24 23 22 26 26 C 1.51681 * 106.99807 * 180.57362 * 24 23 22 27 27 C 1.54693 * 101.90187 * 15.38334 * 26 24 23 28 28 O 1.35999 * 129.72302 * 179.05999 * 23 22 21 29 29 C 1.47029 * 125.64936 * 193.62770 * 9 7 2 30 30 H 0.97006 * 120.00147 * 185.85356 * 1 2 3 31 31 H 1.08995 * 110.36729 * 274.74866 * 10 9 7 32 32 H 1.08999 * 110.36759 * 37.07366 * 10 9 7 33 33 H 0.96705 * 113.99864 * 292.19978 * 13 11 10 34 34 H 1.08995 * 109.47631 * 300.06792 * 16 14 11 35 35 H 1.09004 * 109.47301 * 60.06964 * 16 14 11 36 36 H 0.96998 * 119.99915 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.90348 * 0.11383 * 21 20 18 38 38 H 1.08001 * 119.78262 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.07370 * 179.97438 * 25 24 23 40 40 H 1.09001 * 110.94432 * 133.53852 * 26 24 23 41 41 H 1.09006 * 110.94035 * 257.19278 * 26 24 23 42 42 H 1.09008 * 110.74151 * 92.99174 * 27 26 24 43 43 H 1.09002 * 110.74407 * 216.14246 * 27 26 24 44 44 H 1.08996 * 109.88404 * 300.44326 * 29 9 7 45 45 H 1.09003 * 109.87364 * 61.45371 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 3.1040 1.6963 1.2125 6 1 1.2853 2.7464 0.0006 7 6 2.0102 -1.2022 0.0005 8 1 3.0002 -1.2541 0.4290 9 7 1.4396 -2.3224 -0.5423 10 6 0.2377 -2.3470 -1.3956 11 6 0.3679 -3.6531 -2.2226 12 1 -0.6101 -4.0046 -2.5510 13 8 1.2457 -3.4751 -3.3361 14 6 0.9844 -4.6202 -1.1775 15 1 0.2090 -5.0425 -0.5384 16 6 1.7802 -5.7310 -1.8657 17 7 2.3471 -6.6249 -0.8528 18 6 3.0926 -7.6829 -1.2290 19 8 3.2951 -7.8951 -2.4089 20 6 3.6633 -8.5838 -0.2086 21 6 3.4345 -8.3447 1.1492 22 6 3.9691 -9.1831 2.0986 23 6 4.7438 -10.2799 1.7176 24 6 4.9629 -10.5164 0.3636 25 6 4.4321 -9.6865 -0.5928 26 6 5.8150 -11.7673 0.2642 27 6 5.6726 -12.3641 1.6842 28 8 5.3710 -11.2101 2.4864 29 6 1.9205 -3.7005 -0.3655 30 1 -0.4851 -0.8357 0.0857 31 1 -0.6628 -2.3719 -0.7820 32 1 0.2237 -1.4801 -2.0563 33 1 0.9029 -2.8785 -4.0156 34 1 1.1202 -6.2974 -2.5226 35 1 2.5862 -5.2904 -2.4526 36 1 2.1860 -6.4554 0.0885 37 1 2.8364 -7.4986 1.4536 38 1 3.7877 -8.9922 3.1461 39 1 4.6112 -9.8829 -1.6396 40 1 5.4185 -12.4502 -0.4871 41 1 6.8535 -11.5151 0.0492 42 1 4.8547 -13.0838 1.7202 43 1 6.6063 -12.8267 2.0040 44 1 2.9409 -3.7878 -0.7384 45 1 1.8870 -3.9722 0.6896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958417708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:11 Heat of formation + Delta-G solvation = -60.616635 kcal Electronic energy + Delta-G solvation = -27860.581443 eV Core-core repulsion = 23844.236564 eV Total energy + Delta-G solvation = -4016.344879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51437 -39.87476 -38.53493 -37.23616 -35.06921 -34.78369 -33.16291 -32.33630 -30.82053 -29.83548 -29.23557 -27.97243 -25.56258 -24.32919 -23.53964 -22.97888 -22.18335 -20.77525 -20.11395 -19.77819 -17.94252 -17.80105 -17.66354 -17.03348 -16.69115 -16.41222 -15.74074 -15.21960 -14.60563 -14.57593 -14.40307 -14.36358 -13.83173 -13.74324 -13.55793 -13.43759 -13.39476 -13.22841 -12.94533 -12.69846 -12.47143 -12.21543 -12.18568 -11.58284 -11.26311 -11.13958 -11.01590 -10.76675 -10.68225 -10.55824 -10.39828 -10.01927 -9.90349 -9.67754 -9.31434 -9.30478 -9.01245 -8.49866 -8.44175 -6.96552 -6.11846 -3.13645 0.57454 0.97122 2.64017 2.86166 3.15058 3.49633 3.54368 3.59470 3.71595 3.97947 4.16301 4.43923 4.49014 4.54125 4.60220 4.64148 4.79794 4.84738 4.95634 5.00150 5.15940 5.19565 5.22227 5.28874 5.29439 5.31520 5.53135 5.63025 5.69935 5.79477 5.87226 5.91336 5.95711 6.01380 6.11786 6.21113 6.24728 6.43740 6.52730 6.70700 6.73240 6.82478 6.87706 7.51517 7.73417 8.07497 8.22023 8.45574 8.99318 9.79256 10.32869 11.21486 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.002330 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.130296 B =12013.331042 C =12913.607411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.027 4.027 3 Si 1.064 2.936 4 H -0.294 1.294 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.331 4.331 8 H 0.066 0.934 9 N -0.597 5.597 10 C 0.118 3.882 11 C 0.092 3.908 12 H 0.060 0.940 13 O -0.553 6.553 14 C -0.107 4.107 15 H 0.088 0.912 16 C 0.141 3.859 17 N -0.722 5.722 18 C 0.561 3.439 19 O -0.542 6.542 20 C -0.160 4.160 21 C -0.048 4.048 22 C -0.144 4.144 23 C 0.129 3.871 24 C -0.187 4.187 25 C -0.009 4.009 26 C -0.109 4.109 27 C 0.051 3.949 28 O -0.302 6.302 29 C 0.145 3.855 30 H 0.267 0.733 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.375 0.625 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.399 0.601 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.031 0.969 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.028 -23.960 1.194 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.228 4.228 3 Si 0.893 3.107 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.459 4.459 8 H 0.084 0.916 9 N -0.324 5.324 10 C -0.008 4.008 11 C 0.032 3.968 12 H 0.078 0.922 13 O -0.359 6.359 14 C -0.126 4.126 15 H 0.106 0.894 16 C 0.018 3.982 17 N -0.373 5.373 18 C 0.348 3.652 19 O -0.421 6.421 20 C -0.164 4.164 21 C -0.067 4.067 22 C -0.163 4.163 23 C 0.083 3.917 24 C -0.188 4.188 25 C -0.028 4.028 26 C -0.146 4.146 27 C -0.024 4.024 28 O -0.215 6.215 29 C 0.019 3.981 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.234 0.766 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.127 0.873 44 H 0.049 0.951 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.487 -22.761 0.906 23.685 hybrid contribution -0.237 -1.223 0.299 1.281 sum 6.250 -23.985 1.204 24.815 Atomic orbital electron populations 1.70816 1.06570 1.30055 1.48968 1.25708 0.96458 1.00907 0.99729 0.83536 0.74818 0.76076 0.76228 1.22116 1.22037 1.21098 1.19764 0.99357 0.87817 1.38944 0.91619 1.44390 1.30748 1.01168 1.56123 1.22274 0.90820 0.94930 0.92789 1.23014 0.91186 0.96186 0.86452 0.92174 1.86441 1.47599 1.69603 1.32224 1.22514 0.98632 0.94596 0.96904 0.89409 1.21221 0.97905 0.89222 0.89858 1.45997 1.52653 1.27722 1.10938 1.18022 0.78347 0.80669 0.88132 1.90773 1.59940 1.73264 1.18074 1.19818 1.04686 0.98513 0.93356 1.21081 0.96569 0.97654 0.91366 1.20184 1.00094 0.95122 1.00864 1.19851 0.91476 0.91021 0.89366 1.20690 1.03967 1.00674 0.93449 1.20333 0.92041 0.90762 0.99699 1.21805 1.00508 0.94276 0.98031 1.23880 1.02455 0.87227 0.88854 1.86810 1.72042 1.26025 1.36639 1.21325 0.95717 0.85384 0.95633 0.92126 0.94988 0.92400 0.77764 0.91576 0.89939 0.76578 0.84452 0.84587 0.84331 0.88735 0.88867 0.90270 0.87335 0.95095 0.96178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.53 12.82 55.49 0.71 -26.81 16 2 C -0.03 -0.78 5.09 -17.43 -0.09 -0.87 16 3 Si 1.06 25.48 30.00 -169.99 -5.10 20.38 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.33 -9.39 10.05 -15.06 -0.15 -9.54 16 8 H 0.07 1.87 7.96 -52.48 -0.42 1.45 16 9 N -0.60 -15.02 3.33 -169.93 -0.57 -15.58 16 10 C 0.12 2.64 4.97 -2.40 -0.01 2.62 16 11 C 0.09 1.60 4.17 -24.45 -0.10 1.50 16 12 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 13 O -0.55 -9.62 12.25 -35.23 -0.43 -10.05 16 14 C -0.11 -1.75 2.93 -88.79 -0.26 -2.01 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.14 2.17 4.60 -4.04 -0.02 2.16 16 17 N -0.72 -9.75 5.35 -61.33 -0.33 -10.07 16 18 C 0.56 8.19 7.77 -12.44 -0.10 8.10 16 19 O -0.54 -9.74 16.36 5.30 0.09 -9.66 16 20 C -0.16 -1.94 5.88 -104.92 -0.62 -2.56 16 21 C -0.05 -0.48 9.52 -39.29 -0.37 -0.86 16 22 C -0.14 -1.40 10.05 -39.36 -0.40 -1.80 16 23 C 0.13 1.33 7.04 -38.73 -0.27 1.06 16 24 C -0.19 -1.84 6.26 -104.13 -0.65 -2.49 16 25 C -0.01 -0.11 9.58 -39.33 -0.38 -0.48 16 26 C -0.11 -0.70 7.12 -26.51 -0.19 -0.89 16 27 C 0.05 0.30 8.00 38.05 0.30 0.60 16 28 O -0.30 -2.91 11.09 -19.74 -0.22 -3.13 16 29 C 0.15 2.97 6.52 -3.06 -0.02 2.95 16 30 H 0.27 7.90 5.83 -40.82 -0.24 7.66 16 31 H 0.03 0.75 6.84 -51.93 -0.36 0.40 16 32 H 0.06 1.42 7.73 -51.93 -0.40 1.02 16 33 H 0.38 5.11 9.12 45.56 0.42 5.53 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.50 7.45 -51.93 -0.39 1.11 16 36 H 0.40 4.50 6.36 -40.82 -0.26 4.24 16 37 H 0.14 1.10 6.40 -52.49 -0.34 0.76 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.14 1.54 7.66 -52.49 -0.40 1.14 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 43 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.67 7.77 -51.93 -0.40 0.27 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -36.01 368.37 -9.00 -45.01 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.39 Total: 6.87 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.32 Total: -2.51 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.18 Total: -52.47 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.56 Total: -22.83 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.10 Total: 20.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.01 -9.00 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958417708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.606 kcal (2) G-P(sol) polarization free energy of solvation -36.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds