Wall clock time and date at job start Sat Apr 11 2020 03:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00335 * 2 1 4 4 H 1.48502 * 109.47389 * 240.00255 * 3 2 1 5 5 H 1.48499 * 109.47223 * 119.99855 * 3 2 1 6 6 H 1.48500 * 109.47095 * 0.02562 * 3 2 1 7 7 C 1.38816 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00318 * 207.26377 * 7 2 1 9 9 N 1.36933 * 119.99961 * 27.26821 * 7 2 1 10 10 C 1.47425 * 125.64884 * 13.32323 * 9 7 2 11 11 C 1.55140 * 104.72236 * 155.81526 * 10 9 7 12 12 H 1.08992 * 110.90138 * 155.27569 * 11 10 9 13 13 O 1.42899 * 111.22399 * 279.18013 * 11 10 9 14 14 C 1.55163 * 101.48282 * 37.29725 * 11 10 9 15 15 H 1.08996 * 110.71881 * 82.69635 * 14 11 10 16 16 C 1.52995 * 110.86789 * 205.89415 * 14 11 10 17 17 N 1.46506 * 109.46858 * 180.02562 * 16 14 11 18 18 C 1.34779 * 119.99895 * 180.02562 * 17 16 14 19 19 O 1.21578 * 120.00156 * 0.02562 * 18 17 16 20 20 C 1.47604 * 119.99729 * 180.02562 * 18 17 16 21 21 C 1.39753 * 120.26396 * 359.97438 * 20 18 17 22 22 C 1.37478 * 120.19656 * 180.13837 * 21 20 18 23 23 C 1.39585 * 120.43050 * 359.97438 * 22 21 20 24 24 C 1.39183 * 119.10534 * 359.72563 * 23 22 21 25 25 C 1.37306 * 120.93658 * 0.17834 * 24 23 22 26 26 C 1.51681 * 106.99807 * 180.57362 * 24 23 22 27 27 C 1.54693 * 101.90187 * 15.38334 * 26 24 23 28 28 O 1.35999 * 129.72302 * 179.05999 * 23 22 21 29 29 C 1.47029 * 125.64936 * 193.62770 * 9 7 2 30 30 H 0.97006 * 120.00147 * 185.85356 * 1 2 3 31 31 H 1.08995 * 110.36729 * 274.74866 * 10 9 7 32 32 H 1.08999 * 110.36759 * 37.07366 * 10 9 7 33 33 H 0.96705 * 113.99864 * 292.19978 * 13 11 10 34 34 H 1.08995 * 109.47631 * 300.06792 * 16 14 11 35 35 H 1.09004 * 109.47301 * 60.06964 * 16 14 11 36 36 H 0.96998 * 119.99915 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.90348 * 0.11383 * 21 20 18 38 38 H 1.08001 * 119.78262 * 180.02562 * 22 21 20 39 39 H 1.07998 * 120.07370 * 179.97438 * 25 24 23 40 40 H 1.09001 * 110.94432 * 133.53852 * 26 24 23 41 41 H 1.09006 * 110.94035 * 257.19278 * 26 24 23 42 42 H 1.09008 * 110.74151 * 92.99174 * 27 26 24 43 43 H 1.09002 * 110.74407 * 216.14246 * 27 26 24 44 44 H 1.08996 * 109.88404 * 300.44326 * 29 9 7 45 45 H 1.09003 * 109.87364 * 61.45371 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 3.1040 1.6963 1.2125 6 1 1.2853 2.7464 0.0006 7 6 2.0102 -1.2022 0.0005 8 1 3.0002 -1.2541 0.4290 9 7 1.4396 -2.3224 -0.5423 10 6 0.2377 -2.3470 -1.3956 11 6 0.3679 -3.6531 -2.2226 12 1 -0.6101 -4.0046 -2.5510 13 8 1.2457 -3.4751 -3.3361 14 6 0.9844 -4.6202 -1.1775 15 1 0.2090 -5.0425 -0.5384 16 6 1.7802 -5.7310 -1.8657 17 7 2.3471 -6.6249 -0.8528 18 6 3.0926 -7.6829 -1.2290 19 8 3.2951 -7.8951 -2.4089 20 6 3.6633 -8.5838 -0.2086 21 6 3.4345 -8.3447 1.1492 22 6 3.9691 -9.1831 2.0986 23 6 4.7438 -10.2799 1.7176 24 6 4.9629 -10.5164 0.3636 25 6 4.4321 -9.6865 -0.5928 26 6 5.8150 -11.7673 0.2642 27 6 5.6726 -12.3641 1.6842 28 8 5.3710 -11.2101 2.4864 29 6 1.9205 -3.7005 -0.3655 30 1 -0.4851 -0.8357 0.0857 31 1 -0.6628 -2.3719 -0.7820 32 1 0.2237 -1.4801 -2.0563 33 1 0.9029 -2.8785 -4.0156 34 1 1.1202 -6.2974 -2.5226 35 1 2.5862 -5.2904 -2.4526 36 1 2.1860 -6.4554 0.0885 37 1 2.8364 -7.4986 1.4536 38 1 3.7877 -8.9922 3.1461 39 1 4.6112 -9.8829 -1.6396 40 1 5.4185 -12.4502 -0.4871 41 1 6.8535 -11.5151 0.0492 42 1 4.8547 -13.0838 1.7202 43 1 6.6063 -12.8267 2.0040 44 1 2.9409 -3.7878 -0.7384 45 1 1.8870 -3.9722 0.6896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958417708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:10 Heat of formation + Delta-G solvation = -87.605932 kcal Electronic energy + Delta-G solvation = -27861.751787 eV Core-core repulsion = 23844.236564 eV Total energy + Delta-G solvation = -4017.515223 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21938 -41.01040 -39.99722 -38.09524 -36.55938 -36.27143 -34.18515 -33.70641 -31.94375 -30.97885 -30.22876 -29.57778 -27.12987 -25.77775 -24.38101 -24.03677 -22.87880 -22.32768 -21.47988 -21.09574 -19.70748 -18.89276 -18.46727 -18.32301 -17.59516 -17.13055 -16.81327 -16.46965 -16.33875 -15.94740 -15.66679 -15.51808 -15.17167 -15.15658 -14.77286 -14.63106 -14.29103 -14.09948 -13.94262 -13.91196 -13.61860 -13.45444 -13.18039 -12.74436 -12.68300 -12.56234 -12.38901 -12.19643 -11.92836 -11.91683 -11.83117 -11.79897 -11.62565 -11.11267 -10.88615 -10.54644 -10.20977 -10.05747 -9.26907 -9.01371 -8.33527 -5.31689 -0.27758 0.20792 1.56133 1.63638 1.69928 1.82830 2.04298 2.21796 2.61866 2.70629 3.14672 3.21441 3.38173 3.43321 3.57271 3.65028 3.77248 3.78141 3.83361 3.85312 4.09398 4.12732 4.15635 4.29732 4.38644 4.45157 4.53583 4.61567 4.69064 4.78230 4.81930 4.84419 4.87849 4.96992 5.01933 5.04783 5.09038 5.18885 5.21771 5.23721 5.32599 5.40956 5.62598 6.03344 6.30793 6.44507 6.83641 6.92107 7.11625 7.69169 8.26364 8.99636 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.002330 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.130296 B =12013.331042 C =12913.607411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.076 4.076 3 Si 1.113 2.887 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.289 1.289 7 C -0.344 4.344 8 H 0.055 0.945 9 N -0.622 5.622 10 C 0.119 3.881 11 C 0.105 3.895 12 H 0.101 0.899 13 O -0.566 6.566 14 C -0.091 4.091 15 H 0.118 0.882 16 C 0.155 3.845 17 N -0.714 5.714 18 C 0.561 3.439 19 O -0.583 6.583 20 C -0.180 4.180 21 C -0.043 4.043 22 C -0.149 4.149 23 C 0.123 3.877 24 C -0.192 4.192 25 C -0.021 4.021 26 C -0.108 4.108 27 C 0.046 3.954 28 O -0.316 6.316 29 C 0.143 3.857 30 H 0.258 0.742 31 H 0.022 0.978 32 H 0.026 0.974 33 H 0.391 0.609 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.411 0.589 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.135 0.865 44 H 0.015 0.985 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -25.782 1.927 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.272 4.272 3 Si 0.937 3.063 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.215 1.215 7 C -0.473 4.473 8 H 0.073 0.927 9 N -0.349 5.349 10 C -0.007 4.007 11 C 0.044 3.956 12 H 0.119 0.881 13 O -0.374 6.374 14 C -0.110 4.110 15 H 0.136 0.864 16 C 0.031 3.969 17 N -0.365 5.365 18 C 0.350 3.650 19 O -0.464 6.464 20 C -0.183 4.183 21 C -0.062 4.062 22 C -0.168 4.168 23 C 0.077 3.923 24 C -0.193 4.193 25 C -0.040 4.040 26 C -0.145 4.145 27 C -0.027 4.027 28 O -0.230 6.230 29 C 0.018 3.982 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.248 0.752 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.152 0.848 44 H 0.033 0.967 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.850 -24.614 1.656 25.603 hybrid contribution -0.280 -0.748 0.111 0.806 sum 6.570 -25.362 1.767 26.258 Atomic orbital electron populations 1.70910 1.07332 1.29594 1.51154 1.26996 0.96640 1.04018 0.99558 0.82878 0.73909 0.72349 0.77140 1.21199 1.20133 1.21461 1.19988 0.99089 0.89511 1.38700 0.92665 1.44662 1.31489 1.02223 1.56519 1.22279 0.89428 0.96568 0.92412 1.22980 0.93168 0.93369 0.86068 0.88114 1.86424 1.48383 1.70038 1.32541 1.22465 0.98385 0.93797 0.96377 0.86446 1.20930 0.96913 0.89063 0.89961 1.45871 1.52267 1.27099 1.11282 1.18400 0.77750 0.80735 0.88086 1.90744 1.61493 1.74340 1.19851 1.19700 1.06149 0.98880 0.93580 1.21244 0.96383 0.98132 0.90432 1.20447 0.99761 0.94836 1.01745 1.20115 0.91239 0.91279 0.89710 1.20996 1.03834 1.01453 0.93032 1.20374 0.92575 0.91183 0.99846 1.21933 1.00404 0.93087 0.99069 1.24204 1.04362 0.86272 0.87911 1.86795 1.71739 1.26865 1.37580 1.21429 0.95792 0.84262 0.96753 0.93138 0.96079 0.95568 0.75982 0.90569 0.92887 0.75156 0.82604 0.82746 0.84963 0.87044 0.88026 0.88873 0.84754 0.96716 0.95369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.46 12.82 21.65 0.28 -57.19 16 2 C -0.08 -4.41 5.09 84.86 0.43 -3.97 16 3 Si 1.11 51.82 30.00 68.60 2.06 53.88 16 4 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.34 -19.84 10.05 84.03 0.84 -18.99 16 8 H 0.06 3.21 7.96 -2.91 -0.02 3.18 16 9 N -0.62 -31.58 3.33 -691.52 -2.30 -33.88 16 10 C 0.12 5.35 4.97 86.94 0.43 5.78 16 11 C 0.10 3.46 4.17 32.07 0.13 3.59 16 12 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 13 O -0.57 -19.11 12.25 -148.98 -1.82 -20.93 16 14 C -0.09 -2.81 2.93 -9.61 -0.03 -2.84 16 15 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 16 C 0.16 4.59 4.60 86.38 0.40 4.99 16 17 N -0.71 -18.49 5.35 -466.20 -2.49 -20.99 16 18 C 0.56 16.27 7.77 86.71 0.67 16.94 16 19 O -0.58 -21.26 16.36 -3.96 -0.06 -21.32 16 20 C -0.18 -4.26 5.88 -20.06 -0.12 -4.38 16 21 C -0.04 -0.81 9.52 22.46 0.21 -0.60 16 22 C -0.15 -2.65 10.05 22.42 0.23 -2.43 16 23 C 0.12 2.34 7.04 22.82 0.16 2.50 16 24 C -0.19 -3.55 6.26 -19.54 -0.12 -3.67 16 25 C -0.02 -0.46 9.58 22.43 0.21 -0.25 16 26 C -0.11 -1.16 7.12 30.74 0.22 -0.94 16 27 C 0.05 0.42 8.00 72.56 0.58 1.00 16 28 O -0.32 -5.43 11.09 -93.54 -1.04 -6.47 16 29 C 0.14 5.78 6.52 86.73 0.57 6.34 16 30 H 0.26 15.63 5.83 -92.70 -0.54 15.09 16 31 H 0.02 1.01 6.84 -2.39 -0.02 0.99 16 32 H 0.03 1.32 7.73 -2.39 -0.02 1.30 16 33 H 0.39 10.26 9.12 -74.05 -0.68 9.59 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 1.92 7.45 -2.39 -0.02 1.90 16 36 H 0.41 8.55 6.36 -92.71 -0.59 7.96 16 37 H 0.16 2.18 6.40 -2.91 -0.02 2.16 16 38 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.13 3.03 7.66 -2.91 -0.02 3.01 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 43 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.01 0.65 7.77 -2.39 -0.02 0.63 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -79.95 368.37 -0.56 -80.51 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.00 Total: 23.31 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 4.82 Total: 3.07 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.52 Total: -112.05 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -2.93 Total: -48.72 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 2.06 Total: 53.88 kcal Total: -79.95 -0.56 -80.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958417708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.092 kcal (2) G-P(sol) polarization free energy of solvation -79.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds