Wall clock time and date at job start Sat Apr 11 2020 03:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 O 1.42905 * 114.38419 * 272.46719 * 11 10 9 13 13 C 1.52997 * 114.21050 * 139.65380 * 11 10 9 14 14 N 1.46504 * 109.46941 * 86.39889 * 13 11 10 15 15 C 1.34780 * 119.99814 * 180.02562 * 14 13 11 16 16 O 1.21561 * 119.99966 * 0.02562 * 15 14 13 17 17 C 1.47846 * 119.99967 * 180.02562 * 15 14 13 18 18 C 1.39444 * 120.00055 * 0.02562 * 17 15 14 19 19 C 1.37933 * 119.72609 * 179.97438 * 18 17 15 20 20 C 1.38226 * 120.03094 * 0.11233 * 19 18 17 21 21 C 1.38709 * 120.58410 * 0.02562 * 20 19 18 22 22 C 1.37666 * 119.96639 * 359.50702 * 21 20 19 23 23 C 1.50638 * 121.58304 * 180.81748 * 22 21 20 24 24 O 1.42725 * 110.26160 * 343.92666 * 23 22 21 25 25 C 1.43215 * 113.11546 * 51.77848 * 24 23 22 26 26 C 1.50760 * 118.71289 * 179.46040 * 21 20 19 27 27 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 29 29 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 30 30 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 31 31 H 0.96696 * 113.99817 * 273.68776 * 12 11 10 32 32 H 1.09003 * 109.47151 * 206.40104 * 13 11 10 33 33 H 1.08997 * 109.47141 * 326.39972 * 13 11 10 34 34 H 0.96992 * 120.00307 * 0.02562 * 14 13 11 35 35 H 1.07997 * 120.13058 * 359.93084 * 18 17 15 36 36 H 1.07998 * 119.98708 * 180.13140 * 19 18 17 37 37 H 1.07999 * 119.70732 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.33365 * 104.16752 * 23 22 21 39 39 H 1.09004 * 109.33820 * 223.68181 * 23 22 21 40 40 H 1.08997 * 109.63269 * 49.15178 * 25 24 23 41 41 H 1.08996 * 109.62951 * 169.55251 * 25 24 23 42 42 H 1.09004 * 109.42312 * 283.16327 * 26 21 20 43 43 H 1.09000 * 109.42059 * 42.97345 * 26 21 20 44 44 H 1.09005 * 113.46156 * 321.64040 * 27 9 7 45 45 H 1.08994 * 113.46837 * 92.01680 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 8 0.3874 -4.0066 -2.1181 13 6 -0.3820 -5.3441 -0.1867 14 7 -1.6426 -5.5094 -0.9148 15 6 -2.4508 -6.5510 -0.6350 16 8 -2.1341 -7.3531 0.2218 17 6 -3.7227 -6.7181 -1.3701 18 6 -4.0857 -5.7983 -2.3533 19 6 -5.2733 -5.9600 -3.0360 20 6 -6.0995 -7.0288 -2.7433 21 6 -5.7467 -7.9463 -1.7647 22 6 -4.5596 -7.8019 -1.0827 23 6 -4.1320 -8.7867 -0.0260 24 8 -5.2424 -9.5834 0.3856 25 6 -5.9366 -10.1895 -0.7107 26 6 -6.6851 -9.0892 -1.4713 27 6 1.6797 -3.8155 0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.4897 -2.9528 1.0077 30 1 -0.7251 -2.1596 -0.6083 31 1 -0.4588 -4.1818 -2.5519 32 1 0.2490 -6.2179 -0.3498 33 1 -0.5887 -5.2389 0.8783 34 1 -1.8955 -4.8692 -1.5982 35 1 -3.4400 -4.9625 -2.5787 36 1 -5.5577 -5.2513 -3.7997 37 1 -7.0280 -7.1506 -3.2814 38 1 -3.3534 -9.4339 -0.4298 39 1 -3.7379 -8.2450 0.8339 40 1 -5.2212 -10.6791 -1.3714 41 1 -6.6480 -10.9236 -0.3327 42 1 -7.5219 -8.7270 -0.8741 43 1 -7.0608 -9.4994 -2.4087 44 1 2.5452 -4.0479 -0.6200 45 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500850737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:37 Heat of formation + Delta-G solvation = -31.926953 kcal Electronic energy + Delta-G solvation = -28345.436846 eV Core-core repulsion = 24330.336044 eV Total energy + Delta-G solvation = -4015.100801 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.00550 -39.62013 -38.64653 -37.62749 -35.14850 -34.16184 -33.32372 -32.06832 -31.90383 -30.15620 -28.49780 -26.39048 -25.63208 -24.82311 -24.17959 -23.63261 -21.91960 -20.92133 -20.17104 -19.43878 -18.26938 -16.99031 -16.69729 -16.66110 -16.12910 -15.83781 -15.67040 -15.44752 -15.38704 -14.84442 -14.41102 -14.26391 -14.02663 -13.92381 -13.68957 -13.41483 -13.14249 -12.97326 -12.73312 -12.52359 -12.32166 -12.27675 -11.95161 -11.87572 -11.70986 -11.11513 -10.95899 -10.93955 -10.74949 -10.45088 -10.05685 -9.91167 -9.73560 -9.54640 -9.33960 -9.10699 -8.95147 -8.87675 -8.85472 -6.93475 -5.80371 -3.12275 0.55735 0.98407 2.67704 3.01411 3.37808 3.42932 3.45594 3.51365 3.70136 4.24658 4.35228 4.39935 4.41056 4.46873 4.54240 4.70972 4.81462 4.91704 4.95597 5.07410 5.15367 5.17626 5.27589 5.32297 5.40292 5.46519 5.55129 5.56863 5.65592 5.70636 5.72566 5.94584 5.96569 6.08842 6.19936 6.27906 6.34945 6.48266 6.49228 6.52874 6.91454 6.94922 7.11347 7.34894 7.45915 7.91895 8.02107 8.11702 8.99757 9.66511 10.56839 11.37471 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.002446 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.492483 B =11445.756177 C =12060.040296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.083 0.917 9 N -0.600 5.600 10 C 0.136 3.864 11 C 0.056 3.944 12 O -0.520 6.520 13 C 0.107 3.893 14 N -0.716 5.716 15 C 0.558 3.442 16 O -0.535 6.535 17 C -0.128 4.128 18 C -0.084 4.084 19 C -0.124 4.124 20 C -0.092 4.092 21 C -0.088 4.088 22 C -0.059 4.059 23 C 0.095 3.905 24 O -0.378 6.378 25 C 0.054 3.946 26 C -0.112 4.112 27 C 0.135 3.865 28 H 0.253 0.747 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.358 0.642 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.397 0.603 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.136 0.864 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 -18.637 -6.606 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.746 3.254 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.340 4.340 8 H 0.101 0.899 9 N -0.325 5.325 10 C 0.010 3.990 11 C 0.013 3.987 12 O -0.324 6.324 13 C -0.017 4.017 14 N -0.369 5.369 15 C 0.346 3.654 16 O -0.414 6.414 17 C -0.131 4.131 18 C -0.102 4.102 19 C -0.142 4.142 20 C -0.110 4.110 21 C -0.088 4.088 22 C -0.060 4.060 23 C 0.020 3.980 24 O -0.297 6.297 25 C -0.023 4.023 26 C -0.150 4.150 27 C 0.008 3.992 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.204 0.796 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.234 0.766 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.153 0.847 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.845 -18.676 -5.665 23.928 hybrid contribution -0.290 1.383 -0.786 1.617 sum -14.135 -17.293 -6.450 23.248 Atomic orbital electron populations 1.69822 1.05042 1.25235 1.56734 1.24794 0.95748 0.97577 1.02420 0.85992 0.78745 0.83467 0.77238 1.20391 1.21670 1.21732 1.18961 0.90178 0.81148 1.43711 0.89896 1.45282 1.02288 0.99144 1.85768 1.22752 0.89718 0.89818 0.96731 1.23450 0.99941 0.93396 0.81927 1.86659 1.34989 1.93659 1.17065 1.22001 0.83572 0.98906 0.97231 1.45860 1.21960 1.27848 1.41244 1.18219 0.83465 0.81133 0.82611 1.90705 1.74141 1.43303 1.33284 1.19802 0.96076 0.97459 0.99797 1.21323 0.96914 0.97694 0.94296 1.21079 0.94430 0.98316 1.00393 1.21282 0.99417 0.93850 0.96487 1.19471 0.95012 0.97694 0.96654 1.20337 0.93514 0.95365 0.96784 1.21987 0.87119 0.90790 0.98133 1.88147 1.44912 1.65414 1.31186 1.22693 0.95775 0.94332 0.89523 1.21174 0.97834 0.94378 1.01568 1.22374 0.93618 0.87010 0.96243 0.93732 0.94835 0.90549 0.79558 0.90739 0.89884 0.76645 0.85151 0.85010 0.85473 0.91072 0.84691 0.92647 0.88427 0.89425 0.89726 0.93007 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 11.51 55.49 0.64 -26.55 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.21 -6.03 10.75 -15.06 -0.16 -6.19 16 8 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 9 N -0.60 -15.46 3.78 -184.76 -0.70 -16.16 16 10 C 0.14 3.09 6.83 -8.51 -0.06 3.03 16 11 C 0.06 1.00 1.73 -90.12 -0.16 0.85 16 12 O -0.52 -9.33 13.56 -35.23 -0.48 -9.80 16 13 C 0.11 1.58 5.43 -4.04 -0.02 1.56 16 14 N -0.72 -9.11 5.29 -61.25 -0.32 -9.44 16 15 C 0.56 7.58 7.73 -12.33 -0.10 7.48 16 16 O -0.54 -8.51 13.16 5.31 0.07 -8.44 16 17 C -0.13 -1.51 5.88 -104.89 -0.62 -2.13 16 18 C -0.08 -0.80 9.54 -39.24 -0.37 -1.18 16 19 C -0.12 -1.03 10.03 -39.70 -0.40 -1.43 16 20 C -0.09 -0.75 9.66 -39.41 -0.38 -1.13 16 21 C -0.09 -0.85 5.77 -104.63 -0.60 -1.46 16 22 C -0.06 -0.69 5.83 -104.23 -0.61 -1.30 16 23 C 0.10 1.18 5.20 35.98 0.19 1.36 16 24 O -0.38 -4.48 10.80 -35.23 -0.38 -4.86 16 25 C 0.05 0.44 6.87 37.30 0.26 0.69 16 26 C -0.11 -0.82 6.01 -27.71 -0.17 -0.99 16 27 C 0.13 2.76 8.11 -8.52 -0.07 2.69 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 30 H 0.08 1.92 7.12 -51.93 -0.37 1.55 16 31 H 0.36 4.70 7.20 45.56 0.33 5.03 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 34 H 0.40 4.26 4.97 -40.82 -0.20 4.06 16 35 H 0.13 1.01 6.39 -52.49 -0.34 0.67 16 36 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.14 1.90 6.03 -51.93 -0.31 1.59 16 40 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -34.88 364.58 -9.54 -44.42 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.48 Total: 6.62 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -3.36 Total: 1.51 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.38 Total: -52.14 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.79 Total: -23.11 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.88 -9.54 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500850737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.494 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds