Wall clock time and date at job start Sat Apr 11 2020 03:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 O 1.42905 * 114.38419 * 272.46719 * 11 10 9 13 13 C 1.52997 * 114.21050 * 139.65380 * 11 10 9 14 14 N 1.46504 * 109.46941 * 86.39889 * 13 11 10 15 15 C 1.34780 * 119.99814 * 180.02562 * 14 13 11 16 16 O 1.21561 * 119.99966 * 0.02562 * 15 14 13 17 17 C 1.47846 * 119.99967 * 180.02562 * 15 14 13 18 18 C 1.39444 * 120.00055 * 0.02562 * 17 15 14 19 19 C 1.37933 * 119.72609 * 179.97438 * 18 17 15 20 20 C 1.38226 * 120.03094 * 0.11233 * 19 18 17 21 21 C 1.38709 * 120.58410 * 0.02562 * 20 19 18 22 22 C 1.37666 * 119.96639 * 359.50702 * 21 20 19 23 23 C 1.50638 * 121.58304 * 180.81748 * 22 21 20 24 24 O 1.42725 * 110.26160 * 343.92666 * 23 22 21 25 25 C 1.43215 * 113.11546 * 51.77848 * 24 23 22 26 26 C 1.50760 * 118.71289 * 179.46040 * 21 20 19 27 27 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 29 29 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 30 30 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 31 31 H 0.96696 * 113.99817 * 273.68776 * 12 11 10 32 32 H 1.09003 * 109.47151 * 206.40104 * 13 11 10 33 33 H 1.08997 * 109.47141 * 326.39972 * 13 11 10 34 34 H 0.96992 * 120.00307 * 0.02562 * 14 13 11 35 35 H 1.07997 * 120.13058 * 359.93084 * 18 17 15 36 36 H 1.07998 * 119.98708 * 180.13140 * 19 18 17 37 37 H 1.07999 * 119.70732 * 180.02562 * 20 19 18 38 38 H 1.09003 * 109.33365 * 104.16752 * 23 22 21 39 39 H 1.09004 * 109.33820 * 223.68181 * 23 22 21 40 40 H 1.08997 * 109.63269 * 49.15178 * 25 24 23 41 41 H 1.08996 * 109.62951 * 169.55251 * 25 24 23 42 42 H 1.09004 * 109.42312 * 283.16327 * 26 21 20 43 43 H 1.09000 * 109.42059 * 42.97345 * 26 21 20 44 44 H 1.09005 * 113.46156 * 321.64040 * 27 9 7 45 45 H 1.08994 * 113.46837 * 92.01680 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 8 0.3874 -4.0066 -2.1181 13 6 -0.3820 -5.3441 -0.1867 14 7 -1.6426 -5.5094 -0.9148 15 6 -2.4508 -6.5510 -0.6350 16 8 -2.1341 -7.3531 0.2218 17 6 -3.7227 -6.7181 -1.3701 18 6 -4.0857 -5.7983 -2.3533 19 6 -5.2733 -5.9600 -3.0360 20 6 -6.0995 -7.0288 -2.7433 21 6 -5.7467 -7.9463 -1.7647 22 6 -4.5596 -7.8019 -1.0827 23 6 -4.1320 -8.7867 -0.0260 24 8 -5.2424 -9.5834 0.3856 25 6 -5.9366 -10.1895 -0.7107 26 6 -6.6851 -9.0892 -1.4713 27 6 1.6797 -3.8155 0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.4897 -2.9528 1.0077 30 1 -0.7251 -2.1596 -0.6083 31 1 -0.4588 -4.1818 -2.5519 32 1 0.2490 -6.2179 -0.3498 33 1 -0.5887 -5.2389 0.8783 34 1 -1.8955 -4.8692 -1.5982 35 1 -3.4400 -4.9625 -2.5787 36 1 -5.5577 -5.2513 -3.7997 37 1 -7.0280 -7.1506 -3.2814 38 1 -3.3534 -9.4339 -0.4298 39 1 -3.7379 -8.2450 0.8339 40 1 -5.2212 -10.6791 -1.3714 41 1 -6.6480 -10.9236 -0.3327 42 1 -7.5219 -8.7270 -0.8741 43 1 -7.0608 -9.4994 -2.4087 44 1 2.5452 -4.0479 -0.6200 45 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500850737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:36 Heat of formation + Delta-G solvation = -58.223951 kcal Electronic energy + Delta-G solvation = -28346.577169 eV Core-core repulsion = 24330.336044 eV Total energy + Delta-G solvation = -4016.241125 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.89447 -40.90875 -39.88563 -38.41427 -36.67375 -35.42005 -34.16314 -33.97502 -32.66345 -31.09767 -29.96778 -27.88416 -26.65650 -26.49361 -24.84816 -24.73599 -23.51189 -21.84007 -21.06799 -20.94656 -19.34533 -18.69177 -17.75989 -17.57428 -17.22486 -17.00844 -16.76307 -16.63556 -16.30221 -16.11598 -15.75876 -15.67294 -15.14423 -15.06543 -14.90662 -14.56675 -14.46606 -14.06956 -13.84481 -13.73052 -13.51640 -13.20102 -13.01630 -12.99071 -12.86320 -12.60771 -12.52380 -12.48833 -12.20869 -11.79844 -11.62171 -11.39941 -11.00211 -10.89215 -10.71006 -10.63639 -10.30331 -9.80610 -9.65234 -8.96399 -7.93439 -5.26406 -0.22837 0.27116 1.44811 1.45978 1.56305 1.75993 1.95136 2.44771 2.71851 2.94664 3.00887 3.28259 3.31146 3.48790 3.58898 3.62129 3.65682 3.86679 3.90214 4.12585 4.18967 4.30569 4.34785 4.39034 4.50465 4.57700 4.66453 4.70793 4.74592 4.77546 4.81661 4.87052 4.91168 4.92909 5.07731 5.13519 5.21600 5.25436 5.28896 5.40655 5.45485 5.50104 5.86272 5.88982 6.13256 6.33367 6.77367 6.88223 7.04820 7.56208 8.54636 9.24113 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023260 B = 0.002446 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.492483 B =11445.756177 C =12060.040296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.084 0.916 9 N -0.635 5.635 10 C 0.134 3.866 11 C 0.093 3.907 12 O -0.535 6.535 13 C 0.123 3.877 14 N -0.710 5.710 15 C 0.556 3.444 16 O -0.564 6.564 17 C -0.148 4.148 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.085 4.085 21 C -0.097 4.097 22 C -0.081 4.081 23 C 0.103 3.897 24 O -0.400 6.400 25 C 0.044 3.956 26 C -0.109 4.109 27 C 0.128 3.872 28 H 0.249 0.751 29 H 0.027 0.973 30 H 0.046 0.954 31 H 0.380 0.620 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.407 0.593 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.120 0.880 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.054 0.946 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.095 -19.313 -8.396 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.102 0.898 9 N -0.361 5.361 10 C 0.008 3.992 11 C 0.050 3.950 12 O -0.341 6.341 13 C -0.002 4.002 14 N -0.364 5.364 15 C 0.346 3.654 16 O -0.446 6.446 17 C -0.151 4.151 18 C -0.107 4.107 19 C -0.141 4.141 20 C -0.103 4.103 21 C -0.098 4.098 22 C -0.082 4.082 23 C 0.027 3.973 24 O -0.319 6.319 25 C -0.032 4.032 26 C -0.146 4.146 27 C 0.002 3.998 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.230 0.770 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.245 0.755 35 H 0.163 0.837 36 H 0.178 0.822 37 H 0.178 0.822 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.077 0.923 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.133 0.867 44 H 0.073 0.927 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.176 -19.385 -7.481 25.730 hybrid contribution 0.052 1.510 -0.269 1.535 sum -15.124 -17.874 -7.750 24.664 Atomic orbital electron populations 1.69999 1.06357 1.25559 1.58069 1.25646 0.96705 1.00846 1.02860 0.84957 0.78144 0.79132 0.76768 1.19024 1.21717 1.21833 1.19330 0.90684 0.82666 1.42867 0.89809 1.45645 1.03874 1.00467 1.86064 1.22749 0.88204 0.91789 0.96479 1.22849 0.97962 0.92390 0.81774 1.86605 1.37012 1.93710 1.16820 1.21691 0.84345 0.97304 0.96903 1.45721 1.21242 1.28119 1.41281 1.18579 0.84013 0.80568 0.82267 1.90697 1.74913 1.44345 1.34609 1.19728 0.95482 0.98807 1.01077 1.21568 0.97893 0.97521 0.93704 1.21476 0.93562 0.98704 1.00312 1.21694 1.00305 0.92795 0.95491 1.19821 0.94497 0.98843 0.96599 1.20400 0.94869 0.95529 0.97427 1.21676 0.87303 0.90903 0.97430 1.88098 1.44943 1.65660 1.33219 1.22997 0.96112 0.95072 0.89006 1.21236 0.97173 0.93299 1.02898 1.22613 0.95010 0.84439 0.97714 0.94249 0.95510 0.93512 0.77037 0.89638 0.90438 0.75453 0.83698 0.82196 0.82199 0.91967 0.87327 0.92303 0.86200 0.88899 0.86746 0.92748 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 11.51 21.65 0.25 -57.08 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 7 C -0.23 -13.03 10.75 84.03 0.90 -12.13 16 8 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 9 N -0.63 -33.08 3.78 -738.94 -2.79 -35.88 16 10 C 0.13 6.19 6.83 83.18 0.57 6.76 16 11 C 0.09 3.30 1.73 -10.47 -0.02 3.28 16 12 O -0.54 -18.57 13.56 -148.98 -2.02 -20.59 16 13 C 0.12 3.53 5.43 86.38 0.47 4.00 16 14 N -0.71 -17.66 5.29 -465.95 -2.47 -20.13 16 15 C 0.56 15.22 7.73 86.79 0.67 15.89 16 16 O -0.56 -18.58 13.16 -3.91 -0.05 -18.63 16 17 C -0.15 -3.43 5.88 -20.04 -0.12 -3.55 16 18 C -0.09 -1.54 9.54 22.49 0.21 -1.32 16 19 C -0.12 -1.64 10.03 22.19 0.22 -1.42 16 20 C -0.08 -1.09 9.66 22.38 0.22 -0.88 16 21 C -0.10 -1.68 5.77 -19.87 -0.11 -1.80 16 22 C -0.08 -1.87 5.83 -19.61 -0.11 -1.99 16 23 C 0.10 2.66 5.20 71.22 0.37 3.03 16 24 O -0.40 -9.60 10.80 -148.98 -1.61 -11.21 16 25 C 0.04 0.65 6.87 72.07 0.50 1.15 16 26 C -0.11 -1.31 6.01 29.96 0.18 -1.13 16 27 C 0.13 5.18 8.11 83.17 0.67 5.86 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.03 1.27 7.93 -2.38 -0.02 1.25 16 30 H 0.05 2.42 7.12 -2.39 -0.02 2.40 16 31 H 0.38 9.36 7.20 -74.06 -0.53 8.82 16 32 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 2.37 7.89 -2.39 -0.02 2.35 16 34 H 0.41 8.31 4.97 -92.71 -0.46 7.85 16 35 H 0.15 1.95 6.39 -2.91 -0.02 1.93 16 36 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.06 1.63 8.07 -2.39 -0.02 1.61 16 39 H 0.11 3.32 6.03 -2.38 -0.01 3.31 16 40 H 0.06 0.82 8.07 -2.39 -0.02 0.80 16 41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 Total: -1.00 -77.57 364.58 -1.53 -79.10 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.04 Total: 23.92 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.09 Total: 12.33 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -5.01 Total: -113.08 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -3.68 Total: -50.44 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -77.57 -1.53 -79.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500850737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.876 kcal (2) G-P(sol) polarization free energy of solvation -77.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds