Wall clock time and date at job start Sat Apr 11 2020 03:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48503 * 109.47184 * 270.00445 * 3 2 1 5 5 H 1.48500 * 109.47124 * 29.99755 * 3 2 1 6 6 H 1.48499 * 109.47684 * 150.00390 * 3 2 1 7 7 C 1.38950 * 119.99993 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00178 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00205 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99947 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00265 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99682 * 179.97438 * 10 9 7 13 13 O 1.45204 * 109.47105 * 179.97438 * 12 10 9 14 14 C 1.34713 * 117.00129 * 180.02562 * 13 12 10 15 15 O 1.21472 * 119.99976 * 0.02562 * 14 13 12 16 16 C 1.47723 * 120.00040 * 180.02562 * 14 13 12 17 17 C 1.39628 * 120.14820 * 179.97438 * 16 14 13 18 18 C 1.37949 * 119.84766 * 180.02562 * 17 16 14 19 19 C 1.38372 * 120.14449 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.84236 * 179.97438 * 19 18 17 21 21 N 1.46905 * 109.47059 * 89.99905 * 20 19 18 22 22 C 1.48560 * 110.99577 * 189.99748 * 21 20 19 23 23 C 1.54378 * 104.69549 * 200.89794 * 22 21 20 24 24 C 1.54571 * 104.91190 * 23.88545 * 23 22 21 25 25 C 1.48555 * 110.99889 * 74.58229 * 21 20 19 26 26 C 1.38362 * 120.30976 * 0.27175 * 19 18 17 27 27 C 1.37949 * 120.14480 * 359.45331 * 26 19 18 28 28 H 0.97000 * 119.99708 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00332 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47493 * 60.00246 * 12 10 9 31 31 H 1.09001 * 109.47473 * 299.99976 * 12 10 9 32 32 H 1.07996 * 120.07717 * 359.97438 * 17 16 14 33 33 H 1.07993 * 119.92604 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47305 * 329.99887 * 20 19 18 35 35 H 1.08997 * 109.46731 * 209.99985 * 20 19 18 36 36 H 1.09002 * 110.41441 * 319.73871 * 22 21 20 37 37 H 1.09002 * 110.41248 * 82.06172 * 22 21 20 38 38 H 1.09006 * 110.32557 * 142.80924 * 23 22 21 39 39 H 1.08996 * 110.32821 * 265.02105 * 23 22 21 40 40 H 1.08995 * 110.29758 * 241.08109 * 24 23 22 41 41 H 1.09004 * 110.32005 * 118.89089 * 24 23 22 42 42 H 1.09005 * 110.41154 * 277.81401 * 25 21 20 43 43 H 1.08998 * 110.41848 * 40.13562 * 25 21 20 44 44 H 1.07994 * 119.92817 * 179.73217 * 26 19 18 45 45 H 1.07998 * 120.07553 * 180.27633 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5458 1.4401 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0537 -2.3707 -0.0021 11 8 3.4472 -3.4210 -0.0021 12 6 5.5606 -2.3706 -0.0033 13 8 6.0447 -3.7396 -0.0037 14 6 7.3802 -3.9162 -0.0042 15 8 8.1201 -2.9528 -0.0038 16 6 7.9448 -5.2812 -0.0051 17 6 9.3286 -5.4678 -0.0062 18 6 9.8491 -6.7453 -0.0076 19 6 9.0032 -7.8403 -0.0086 20 6 9.5793 -9.2329 -0.0107 21 7 9.7673 -9.6872 1.3736 22 6 10.5499 -10.9492 1.4181 23 6 10.2139 -11.5702 2.7909 24 6 8.8408 -10.9719 3.1729 25 6 8.4671 -10.0418 1.9987 26 6 7.6310 -7.6627 -0.0137 27 6 7.0971 -6.3908 -0.0066 28 1 -0.4850 0.8401 0.0004 29 1 3.8649 -0.3634 -0.0014 30 1 5.9247 -1.8572 0.8867 31 1 5.9233 -1.8564 -0.8933 32 1 9.9898 -4.6139 -0.0067 33 1 10.9192 -6.8910 -0.0080 34 1 10.5402 -9.2279 -0.5251 35 1 8.8954 -9.9081 -0.5250 36 1 10.2414 -11.6164 0.6132 37 1 11.6168 -10.7376 1.3474 38 1 10.1466 -12.6551 2.7095 39 1 10.9674 -11.2911 3.5274 40 1 8.9214 -10.4005 4.0976 41 1 8.0993 -11.7637 3.2794 42 1 7.9659 -9.1468 2.3675 43 1 7.8318 -10.5651 1.2842 44 1 6.9766 -8.5217 -0.0188 45 1 6.0259 -6.2534 -0.0061 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801868430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:04:17 Heat of formation + Delta-G solvation = -84.466309 kcal Electronic energy + Delta-G solvation = -26884.958378 eV Core-core repulsion = 22867.579300 eV Total energy + Delta-G solvation = -4017.379079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.59507 -39.72454 -38.62823 -38.12965 -36.13795 -34.05657 -33.73457 -31.79781 -31.25574 -30.85460 -29.21881 -28.63725 -26.40194 -24.50789 -23.02587 -22.85106 -21.44837 -21.09239 -20.60149 -19.63847 -18.60370 -18.05251 -16.85927 -16.54807 -16.40586 -16.33731 -15.71892 -15.53809 -15.28131 -14.98432 -14.46471 -14.33929 -14.21540 -13.76216 -13.64832 -13.43881 -13.16804 -13.03613 -12.81749 -12.61517 -12.25719 -12.24073 -12.17444 -11.96760 -11.68853 -11.63211 -11.46241 -11.25790 -11.17872 -10.91247 -10.64402 -10.50943 -10.50403 -10.04436 -9.66987 -9.20871 -9.14432 -8.86955 -8.66186 -8.28681 -6.38691 -3.91493 0.52599 1.19514 2.48126 2.61849 2.99727 3.04308 3.12888 3.45331 3.56714 3.81401 4.04503 4.18470 4.23474 4.37318 4.48050 4.54589 4.64095 4.77667 4.82091 4.83985 4.97803 5.06468 5.12057 5.12962 5.20042 5.25474 5.33551 5.35688 5.38361 5.44006 5.56407 5.59603 5.61802 5.67871 5.68445 5.74910 5.82040 6.05582 6.17755 6.25129 6.42238 6.50615 6.52312 6.65853 7.45498 7.81143 8.01499 8.48500 8.84230 9.30548 9.66233 10.73578 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023802 B = 0.001924 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.080334 B =14548.280023 C =15313.968181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.448 3.552 11 O -0.557 6.557 12 C 0.059 3.941 13 O -0.320 6.320 14 C 0.505 3.495 15 O -0.513 6.513 16 C -0.120 4.120 17 C -0.055 4.055 18 C -0.114 4.114 19 C -0.046 4.046 20 C 0.079 3.921 21 N -0.506 5.506 22 C 0.031 3.969 23 C -0.124 4.124 24 C -0.126 4.126 25 C 0.029 3.971 26 C -0.127 4.127 27 C -0.056 4.056 28 H 0.275 0.725 29 H 0.373 0.627 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.127 0.873 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.295 -19.581 1.871 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.220 5.220 10 C 0.233 3.767 11 O -0.439 6.439 12 C -0.019 4.019 13 O -0.234 6.234 14 C 0.350 3.650 15 O -0.403 6.403 16 C -0.122 4.122 17 C -0.073 4.073 18 C -0.133 4.133 19 C -0.046 4.046 20 C -0.049 4.049 21 N -0.230 5.230 22 C -0.097 4.097 23 C -0.162 4.162 24 C -0.164 4.164 25 C -0.099 4.099 26 C -0.146 4.146 27 C -0.074 4.074 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.105 0.895 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.145 0.855 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 23.115 -19.440 2.141 30.279 hybrid contribution 0.147 1.038 -0.468 1.148 sum 23.262 -18.402 1.674 29.708 Atomic orbital electron populations 1.69614 1.05648 1.27747 1.48416 1.25036 0.95525 0.98066 0.97277 0.86678 0.79877 0.83858 0.79096 1.19410 1.19950 1.19334 1.19422 0.78669 0.96869 1.48645 0.86008 1.42033 1.07634 1.05709 1.66576 1.19179 0.86901 0.85138 0.85439 1.90596 1.69047 1.30719 1.53548 1.22766 0.95109 0.80349 1.03687 1.86594 1.22503 1.31201 1.83141 1.21271 0.81050 0.89846 0.72825 1.90808 1.60678 1.42371 1.46446 1.19133 0.93990 0.90157 1.08886 1.21254 0.93274 0.97978 0.94829 1.20898 0.99970 0.91175 1.01222 1.19930 0.93404 0.94861 0.96451 1.21260 1.00916 0.92600 0.90079 1.65417 1.13688 1.28012 1.15846 1.23130 0.99252 0.90212 0.97119 1.22340 0.97568 0.99641 0.96702 1.22354 0.96748 0.98590 0.98706 1.23212 0.91257 0.99273 0.96109 1.21038 0.94442 0.97225 1.01882 1.21622 1.01064 0.91292 0.93390 0.91399 0.79373 0.89326 0.89317 0.84477 0.85124 0.89543 0.93140 0.93762 0.89991 0.91330 0.90933 0.90874 0.91269 0.89674 0.93612 0.85490 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.96 55.50 0.77 -24.40 16 2 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.13 27.73 -169.99 -4.71 14.41 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 7 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.88 7.39 -52.48 -0.39 3.50 16 9 N -0.58 -13.82 5.09 -10.96 -0.06 -13.87 16 10 C 0.45 10.44 7.86 -10.98 -0.09 10.36 16 11 O -0.56 -15.27 16.08 -14.11 -0.23 -15.50 16 12 C 0.06 1.07 5.95 36.00 0.21 1.29 16 13 O -0.32 -5.90 9.01 -47.21 -0.43 -6.32 16 14 C 0.51 8.27 7.90 34.61 0.27 8.55 16 15 O -0.51 -9.03 16.14 -19.24 -0.31 -9.34 16 16 C -0.12 -1.62 5.87 -104.98 -0.62 -2.24 16 17 C -0.06 -0.63 9.60 -39.17 -0.38 -1.00 16 18 C -0.11 -1.07 9.68 -39.64 -0.38 -1.45 16 19 C -0.05 -0.41 5.20 -104.52 -0.54 -0.96 16 20 C 0.08 0.56 4.98 -4.97 -0.02 0.54 16 21 N -0.51 -3.85 5.33 -231.41 -1.23 -5.08 16 22 C 0.03 0.18 6.45 -2.18 -0.01 0.17 16 23 C -0.12 -0.68 7.02 -25.18 -0.18 -0.85 16 24 C -0.13 -0.78 7.01 -25.18 -0.18 -0.96 16 25 C 0.03 0.21 5.70 -2.19 -0.01 0.20 16 26 C -0.13 -1.26 8.93 -39.64 -0.35 -1.61 16 27 C -0.06 -0.68 9.62 -39.17 -0.38 -1.06 16 28 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.14 1.48 7.65 -52.49 -0.40 1.07 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.09 0.51 8.02 -51.93 -0.42 0.10 16 35 H 0.05 0.33 7.70 -51.93 -0.40 -0.07 16 36 H 0.04 0.24 8.00 -51.93 -0.42 -0.18 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.72 7.90 -51.93 -0.41 0.31 16 43 H 0.05 0.31 7.75 -51.93 -0.40 -0.09 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.15 1.90 7.61 -52.49 -0.40 1.50 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -33.50 380.68 -9.80 -43.30 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.44 Total: 7.76 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -2.90 Total: 3.30 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.51 Total: -43.36 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.96 Total: -31.16 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.50 -9.80 -43.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801868430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.165 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds