Wall clock time and date at job start Sat Apr 11 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99637 * 2 1 4 4 H 1.48499 * 109.47153 * 90.00310 * 3 2 1 5 5 H 1.48509 * 109.47038 * 210.00291 * 3 2 1 6 6 H 1.48497 * 109.47023 * 329.99996 * 3 2 1 7 7 C 1.38809 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00498 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64843 * 14.42059 * 9 7 2 11 11 C 1.55132 * 104.72550 * 155.81494 * 10 9 7 12 12 C 1.55154 * 101.48372 * 37.28868 * 11 10 9 13 13 C 1.47024 * 125.65036 * 194.71795 * 9 7 2 14 14 H 1.08998 * 109.88224 * 300.44692 * 13 9 7 15 15 C 1.53004 * 109.88008 * 61.45406 * 13 9 7 16 16 N 1.46501 * 109.46923 * 183.76572 * 15 13 9 17 17 C 1.34774 * 119.99870 * 185.65394 * 16 15 13 18 18 O 1.21278 * 120.00239 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00015 * 180.02562 * 17 16 15 20 20 H 1.08998 * 109.70338 * 305.58688 * 19 17 16 21 21 C 1.53462 * 109.71169 * 66.21328 * 19 17 16 22 22 O 1.43162 * 108.25684 * 179.40551 * 21 19 17 23 23 C 1.36111 * 116.71120 * 313.80693 * 22 21 19 24 24 C 1.38696 * 119.39394 * 197.00314 * 23 22 21 25 25 C 1.38201 * 120.06779 * 180.32785 * 24 23 22 26 26 C 1.38256 * 120.10460 * 0.02562 * 25 24 23 27 27 C 1.38190 * 120.11734 * 359.95779 * 26 25 24 28 28 C 1.38702 * 120.06787 * 359.97438 * 27 26 25 29 29 O 1.36105 * 119.39925 * 180.12960 * 28 27 26 30 30 H 0.96996 * 119.99969 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.35893 * 274.74212 * 10 9 7 32 32 H 1.08993 * 110.36855 * 37.05722 * 10 9 7 33 33 H 1.08997 * 111.18331 * 279.18759 * 11 10 9 34 34 H 1.08991 * 110.93998 * 155.28394 * 11 10 9 35 35 H 1.09004 * 110.71705 * 205.97247 * 12 11 10 36 36 H 1.09003 * 110.72280 * 82.70326 * 12 11 10 37 37 H 1.08996 * 109.46887 * 303.76612 * 15 13 9 38 38 H 1.08998 * 109.46843 * 63.76662 * 15 13 9 39 39 H 0.97002 * 120.00336 * 5.65299 * 16 15 13 40 40 H 1.09002 * 109.71319 * 299.10917 * 21 19 17 41 41 H 1.08999 * 109.70739 * 59.72931 * 21 19 17 42 42 H 1.08006 * 119.96961 * 0.34595 * 24 23 22 43 43 H 1.07994 * 119.94772 * 179.97438 * 25 24 23 44 44 H 1.08004 * 119.93408 * 179.97438 * 26 25 24 45 45 H 1.08004 * 119.96273 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5477 1.4404 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1088 -2.5519 -0.2984 11 6 -0.2471 -4.0217 -0.7751 12 6 0.7644 -4.7441 0.1535 13 6 1.8982 -3.7079 0.3025 14 1 2.7012 -3.9336 -0.3991 15 6 2.4381 -3.7246 1.7340 16 7 3.0860 -5.0121 1.9964 17 6 3.5371 -5.2997 3.2334 18 8 3.4072 -4.4925 4.1292 19 6 4.2041 -6.6239 3.5033 20 1 3.5482 -7.4362 3.1904 21 6 5.5296 -6.7022 2.7339 22 8 6.1421 -7.9634 3.0229 23 6 6.1748 -8.3425 4.3297 24 6 7.0431 -9.3493 4.7249 25 6 7.0829 -9.7499 6.0470 26 6 6.2574 -9.1487 6.9789 27 6 5.3902 -8.1448 6.5918 28 6 5.3463 -7.7371 5.2668 29 8 4.4890 -6.7453 4.9010 30 1 -0.4850 0.8400 0.0004 31 1 -0.7040 -2.3842 0.5992 32 1 -0.4127 -1.8667 -1.0896 33 1 0.0404 -4.1251 -1.8214 34 1 -1.2596 -4.3905 -0.6119 35 1 1.1346 -5.6561 -0.3149 36 1 0.3119 -4.9624 1.1209 37 1 3.1637 -2.9208 1.8579 38 1 1.6152 -3.5825 2.4344 39 1 3.1903 -5.6576 1.2799 40 1 5.3387 -6.6228 1.6636 41 1 6.1873 -5.8931 3.0514 42 1 7.6890 -9.8206 3.9988 43 1 7.7594 -10.5343 6.3525 44 1 6.2905 -9.4642 8.0113 45 1 4.7461 -7.6772 7.3218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028298873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:03:45 Heat of formation + Delta-G solvation = -51.075726 kcal Electronic energy + Delta-G solvation = -28211.897994 eV Core-core repulsion = 24195.966840 eV Total energy + Delta-G solvation = -4015.931154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68793 -39.59976 -37.95955 -37.70424 -37.29887 -34.46824 -32.58891 -31.86789 -30.93865 -29.77689 -29.15140 -28.27985 -25.72553 -24.84763 -23.85257 -23.09066 -21.71192 -20.57816 -20.18047 -19.65123 -19.03110 -18.05644 -17.68336 -16.84110 -16.38911 -15.89444 -15.82001 -15.38784 -15.03057 -14.90471 -14.66630 -14.45897 -14.34600 -14.13779 -13.87208 -13.73042 -13.43047 -13.04584 -12.40987 -12.21861 -12.15438 -11.95537 -11.83794 -11.64241 -11.45132 -11.38900 -10.99467 -10.86073 -10.84182 -10.34245 -10.15818 -10.03206 -9.92049 -9.80601 -9.70418 -8.95598 -8.86826 -8.64671 -8.36828 -6.90940 -5.82602 -3.19810 0.99783 1.01087 2.34396 2.48715 2.76327 3.36180 3.38943 3.42533 3.43441 3.49076 3.87788 4.28923 4.40728 4.42913 4.53002 4.68993 4.75628 4.95772 5.06110 5.10229 5.15504 5.25038 5.32113 5.41906 5.53342 5.55430 5.73507 5.84007 5.88404 5.95168 6.03841 6.16295 6.16617 6.31789 6.37648 6.42706 6.47120 6.57566 6.60291 6.70237 6.95313 7.10091 7.45516 7.50120 7.55930 7.73626 8.17035 8.21130 9.11111 9.71679 10.38372 11.29167 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020623 B = 0.002414 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.408481 B =11594.175024 C =12148.112214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.109 3.891 16 N -0.715 5.715 17 C 0.517 3.483 18 O -0.510 6.510 19 C 0.034 3.966 20 H 0.110 0.890 21 C 0.034 3.966 22 O -0.302 6.302 23 C 0.045 3.955 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.112 4.112 28 C 0.055 3.945 29 O -0.278 6.278 30 H 0.255 0.745 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.383 -21.117 6.395 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.197 4.197 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.016 4.016 16 N -0.368 5.368 17 C 0.299 3.701 18 O -0.384 6.384 19 C -0.026 4.026 20 H 0.127 0.873 21 C -0.042 4.042 22 O -0.216 6.216 23 C 0.000 4.000 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.133 4.133 27 C -0.131 4.131 28 C 0.009 3.991 29 O -0.191 6.191 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.231 0.769 40 H 0.148 0.852 41 H 0.104 0.896 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.170 -20.180 6.972 23.649 hybrid contribution 0.376 0.713 -0.317 0.866 sum 10.546 -19.467 6.656 23.119 Atomic orbital electron populations 1.69932 1.05049 1.25439 1.55551 1.24929 0.95689 0.97942 1.01189 0.86147 0.78718 0.83295 0.77759 1.21336 1.20545 1.21589 1.18973 0.90402 0.82139 1.45029 0.90608 1.44511 1.06362 1.00982 1.79322 1.21520 0.84679 0.90211 0.98906 1.23042 0.97568 0.99587 0.98548 1.22619 0.97146 0.96952 0.99799 1.21146 0.94605 0.88299 0.91631 0.94372 1.22395 0.97199 0.82265 0.99706 1.46052 1.60196 1.20882 1.09682 1.19579 0.79895 0.86871 0.83753 1.90784 1.55163 1.48523 1.43903 1.22990 0.97839 0.99365 0.82450 0.87279 1.23582 0.92778 0.85628 1.02196 1.86329 1.76600 1.36802 1.21852 1.18965 0.97999 0.99284 0.83727 1.20447 0.98337 0.97634 0.96719 1.20927 1.00060 1.00703 0.92054 1.20937 0.96180 0.96186 1.00022 1.20501 1.01226 0.98126 0.93198 1.19046 0.92723 0.92744 0.94542 1.86429 1.60654 1.49067 1.22984 0.93508 0.95529 0.90835 0.92220 0.92309 0.92343 0.91800 0.91105 0.91245 0.76946 0.85209 0.89571 0.84753 0.85050 0.84988 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.19 10.57 55.49 0.59 -25.60 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.09 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.33 9.73 -15.06 -0.15 -6.47 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.08 3.13 -162.44 -0.51 -14.59 16 10 C 0.17 3.97 5.42 -2.41 -0.01 3.96 16 11 C -0.15 -2.61 7.10 -24.46 -0.17 -2.78 16 12 C -0.13 -1.99 6.18 -24.90 -0.15 -2.14 16 13 C 0.15 2.81 3.19 -66.95 -0.21 2.60 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 1.97 5.10 -4.04 -0.02 1.95 16 16 N -0.71 -9.66 5.33 -60.29 -0.32 -9.98 16 17 C 0.52 7.78 7.19 -10.99 -0.08 7.71 16 18 O -0.51 -10.32 16.51 -14.14 -0.23 -10.55 16 19 C 0.03 0.41 3.44 -27.64 -0.10 0.32 16 20 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 21 C 0.03 0.34 6.53 37.40 0.24 0.59 16 22 O -0.30 -3.35 10.42 -32.89 -0.34 -3.69 16 23 C 0.05 0.52 6.49 -39.14 -0.25 0.26 16 24 C -0.11 -1.04 9.96 -39.43 -0.39 -1.43 16 25 C -0.12 -0.92 10.04 -39.59 -0.40 -1.32 16 26 C -0.12 -0.94 10.04 -39.59 -0.40 -1.33 16 27 C -0.11 -1.18 9.96 -39.43 -0.39 -1.57 16 28 C 0.05 0.69 6.49 -39.14 -0.25 0.43 16 29 O -0.28 -4.02 9.62 -47.03 -0.45 -4.47 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.07 1.90 6.92 -51.93 -0.36 1.54 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.00 7.80 -51.93 -0.40 0.59 16 37 H 0.07 1.46 7.88 -51.93 -0.41 1.05 16 38 H 0.07 1.43 8.05 -51.93 -0.42 1.02 16 39 H 0.40 3.89 8.34 -40.82 -0.34 3.55 16 40 H 0.13 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 44 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 45 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -33.41 371.12 -10.08 -43.49 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -6.54 Total: 2.37 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.84 Total: 0.67 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.24 Total: -50.17 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -1.03 Total: -18.72 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.41 -10.08 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028298873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.582 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds