Wall clock time and date at job start Sat Apr 11 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48496 * 109.47052 * 239.99964 * 3 2 1 5 5 H 1.48498 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47197 * 120.00026 * 3 2 1 7 7 C 1.38816 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00287 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99800 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64881 * 180.02562 * 9 7 2 11 11 C 1.54909 * 104.83341 * 204.08197 * 10 9 7 12 12 H 1.08999 * 111.03605 * 81.07611 * 11 10 9 13 13 N 1.46499 * 111.00360 * 204.91223 * 11 10 9 14 14 C 1.34774 * 120.00380 * 267.19639 * 13 11 10 15 15 O 1.21277 * 119.99793 * 0.02562 * 14 13 11 16 16 C 1.50700 * 120.00344 * 179.97438 * 14 13 11 17 17 C 1.52998 * 109.47307 * 179.97438 * 16 14 13 18 18 H 1.08995 * 110.13197 * 55.24729 * 17 16 14 19 19 O 1.43942 * 110.15244 * 293.54811 * 17 16 14 20 20 C 1.43945 * 104.94927 * 269.32146 * 19 17 16 21 21 C 1.51076 * 105.95945 * 331.55628 * 20 19 17 22 22 C 1.37965 * 132.69387 * 197.63355 * 21 20 19 23 23 C 1.38292 * 119.92128 * 180.02562 * 22 21 20 24 24 C 1.38262 * 120.04451 * 0.03837 * 23 22 21 25 25 C 1.38301 * 120.03687 * 359.97438 * 24 23 22 26 26 C 1.37964 * 119.92068 * 359.97438 * 25 24 23 27 27 C 1.55151 * 101.57858 * 322.98826 * 11 10 9 28 28 H 1.09010 * 110.71842 * 154.04395 * 27 11 10 29 29 O 1.42899 * 110.72272 * 277.13515 * 27 11 10 30 30 C 1.47020 * 125.64987 * 359.97367 * 9 7 2 31 31 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.36889 * 85.23463 * 10 9 7 33 33 H 1.09010 * 110.36291 * 322.92015 * 10 9 7 34 34 H 0.97005 * 119.99651 * 87.19434 * 13 11 10 35 35 H 1.09001 * 109.46573 * 59.99971 * 16 14 13 36 36 H 1.08996 * 109.47087 * 300.00349 * 16 14 13 37 37 H 1.08996 * 110.15310 * 90.68621 * 20 19 17 38 38 H 1.09005 * 110.15017 * 212.43811 * 20 19 17 39 39 H 1.07998 * 120.03816 * 0.02562 * 22 21 20 40 40 H 1.07999 * 119.97714 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.98336 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.03620 * 179.97438 * 25 24 23 43 43 H 0.96701 * 114.00243 * 179.97438 * 29 27 11 44 44 H 1.09000 * 109.88063 * 59.57203 * 30 9 7 45 45 H 1.08995 * 109.88085 * 298.40383 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.9333 -3.7312 0.0016 11 6 0.8518 -4.6564 -0.6098 12 1 0.8565 -4.5977 -1.6982 13 7 1.0290 -6.0396 -0.1607 14 6 1.7592 -6.8994 -0.8982 15 8 2.2700 -6.5279 -1.9336 16 6 1.9420 -8.3220 -0.4359 17 6 2.8048 -9.0800 -1.4468 18 1 3.7494 -8.5581 -1.5996 19 8 2.1034 -9.2123 -2.6968 20 6 1.3879 -10.4569 -2.5912 21 6 2.1986 -11.3240 -1.6567 22 6 2.2102 -12.6822 -1.4147 23 6 3.0815 -13.2087 -0.4786 24 6 3.9394 -12.3749 0.2145 25 6 3.9277 -11.0134 -0.0279 26 6 3.0592 -10.4882 -0.9625 27 6 -0.4485 -4.0441 -0.0254 28 1 -1.2991 -4.2545 -0.6738 29 8 -0.6887 -4.5338 1.2954 30 6 -0.1376 -2.5328 0.0006 31 1 -0.4850 0.8400 -0.0004 32 1 2.1663 -4.0414 1.0203 33 1 2.8330 -3.7409 -0.6139 34 1 0.6208 -6.3366 0.6677 35 1 0.9685 -8.8055 -0.3548 36 1 2.4326 -8.3275 0.5374 37 1 0.3945 -10.2850 -2.1771 38 1 1.3107 -10.9298 -3.5702 39 1 1.5397 -13.3335 -1.9556 40 1 3.0916 -14.2718 -0.2887 41 1 4.6191 -12.7871 0.9456 42 1 4.5976 -10.3620 0.5138 43 1 -1.4900 -4.1810 1.7060 44 1 -0.5575 -2.0526 -0.8833 45 1 -0.5544 -2.0840 0.9022 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084007021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:47 Heat of formation + Delta-G solvation = -60.858606 kcal Electronic energy + Delta-G solvation = -28174.446495 eV Core-core repulsion = 24158.091123 eV Total energy + Delta-G solvation = -4016.355372 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.18794 -39.48481 -37.98634 -37.39826 -34.82302 -33.86229 -32.65921 -31.67136 -31.56142 -30.35774 -28.45077 -27.27762 -26.45058 -24.63168 -23.99002 -21.87147 -21.54437 -20.55068 -20.21260 -19.82172 -17.56687 -17.09477 -16.88876 -16.81340 -16.50318 -16.01115 -15.61088 -15.23158 -14.83174 -14.72527 -14.36016 -14.03840 -13.91624 -13.73291 -13.41421 -13.14475 -13.08867 -12.79428 -12.66866 -12.54185 -12.23795 -12.15564 -11.88894 -11.53295 -11.26345 -11.14061 -10.92885 -10.81950 -10.48884 -10.44779 -10.21721 -10.12556 -9.79634 -9.61675 -9.30391 -9.23298 -8.89060 -8.66550 -8.57790 -6.85751 -5.73197 -3.06094 0.86872 0.97120 2.90500 3.24663 3.40054 3.42580 3.45877 3.47761 3.76208 3.92260 4.31481 4.50816 4.56961 4.60191 4.66373 4.70440 4.93907 5.03060 5.07851 5.17034 5.20490 5.23030 5.33004 5.39130 5.43222 5.51925 5.57457 5.64791 5.72511 5.76007 5.90428 6.00072 6.07804 6.09804 6.13057 6.25387 6.51728 6.62562 6.65508 6.69604 6.98087 7.35366 7.46025 7.73782 7.88152 8.08933 8.21688 8.55414 9.19578 9.79791 10.44534 11.39051 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026250 B = 0.002254 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.415089 B =12419.036784 C =12658.103453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.131 3.869 11 C 0.139 3.861 12 H 0.105 0.895 13 N -0.710 5.710 14 C 0.511 3.489 15 O -0.531 6.531 16 C -0.154 4.154 17 C 0.139 3.861 18 H 0.113 0.887 19 O -0.332 6.332 20 C 0.081 3.919 21 C -0.127 4.127 22 C -0.097 4.097 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.090 4.090 26 C -0.123 4.123 27 C 0.067 3.933 28 H 0.060 0.940 29 O -0.568 6.568 30 C 0.155 3.845 31 H 0.253 0.747 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.405 0.595 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.379 0.621 44 H 0.055 0.945 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.700 -26.842 1.320 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.033 3.967 12 H 0.122 0.878 13 N -0.362 5.362 14 C 0.297 3.703 15 O -0.407 6.407 16 C -0.195 4.195 17 C 0.080 3.920 18 H 0.131 0.869 19 O -0.250 6.250 20 C 0.005 3.995 21 C -0.127 4.127 22 C -0.115 4.115 23 C -0.134 4.134 24 C -0.135 4.135 25 C -0.108 4.108 26 C -0.123 4.123 27 C 0.007 3.993 28 H 0.078 0.922 29 O -0.374 6.374 30 C 0.029 3.971 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.240 0.760 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.226 0.774 44 H 0.073 0.927 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.563 -26.484 0.251 26.531 hybrid contribution -0.383 0.916 0.806 1.279 sum 1.180 -25.568 1.057 25.617 Atomic orbital electron populations 1.69900 1.04911 1.25221 1.57489 1.24794 0.95786 0.97717 1.02270 0.86142 0.78420 0.82928 0.77961 1.21080 1.21606 1.21171 1.19048 0.90519 0.82199 1.43470 0.90332 1.44274 1.01272 0.99914 1.87307 1.21833 0.94643 0.85791 0.97320 1.22325 0.95147 0.79710 0.99490 0.87759 1.45770 1.53032 1.10971 1.26444 1.20337 0.78800 0.86927 0.84276 1.90741 1.47794 1.78460 1.23667 1.22099 1.02783 0.93895 1.00705 1.21030 0.96277 0.90914 0.83771 0.86895 1.89330 1.63991 1.37569 1.34095 1.21833 0.94715 0.83927 0.99060 1.21147 0.97971 0.94541 0.99045 1.20407 0.99417 0.93130 0.98513 1.21149 0.95995 0.99972 0.96252 1.21156 0.99269 0.93166 0.99905 1.20480 0.97958 0.95311 0.97080 1.21030 0.97549 0.95856 0.97891 1.23521 0.95718 0.96916 0.83124 0.92219 1.86241 1.49198 1.71623 1.30349 1.21850 0.85544 0.87775 1.01896 0.93685 0.95729 0.93833 0.75958 0.88707 0.87774 0.90661 0.88475 0.85744 0.85526 0.85427 0.85471 0.77364 0.92681 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.06 10.31 55.49 0.57 -26.49 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.22 -6.38 10.28 -15.06 -0.15 -6.54 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -15.69 3.39 -170.07 -0.58 -16.27 16 10 C 0.13 2.93 6.92 -2.53 -0.02 2.92 16 11 C 0.14 2.64 3.31 -65.79 -0.22 2.42 16 12 H 0.10 2.15 7.54 -51.93 -0.39 1.76 16 13 N -0.71 -10.99 5.17 -51.73 -0.27 -11.26 16 14 C 0.51 7.92 7.73 -10.99 -0.08 7.83 16 15 O -0.53 -10.44 15.16 -6.34 -0.10 -10.54 16 16 C -0.15 -1.71 5.38 -27.88 -0.15 -1.86 16 17 C 0.14 1.65 2.93 -27.70 -0.08 1.57 16 18 H 0.11 1.45 7.98 -51.93 -0.41 1.03 16 19 O -0.33 -4.57 10.78 -47.13 -0.51 -5.08 16 20 C 0.08 0.80 7.39 36.19 0.27 1.07 16 21 C -0.13 -1.20 6.32 -104.40 -0.66 -1.86 16 22 C -0.10 -0.74 10.04 -39.66 -0.40 -1.14 16 23 C -0.12 -0.79 10.05 -39.55 -0.40 -1.19 16 24 C -0.12 -0.83 10.05 -39.55 -0.40 -1.23 16 25 C -0.09 -0.76 10.04 -39.66 -0.40 -1.16 16 26 C -0.12 -1.23 5.63 -104.40 -0.59 -1.82 16 27 C 0.07 1.23 4.20 -24.90 -0.10 1.12 16 28 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 29 O -0.57 -9.06 12.14 -35.23 -0.43 -9.49 16 30 C 0.15 3.67 5.14 -3.06 -0.02 3.66 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 32 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.04 1.01 8.14 -51.92 -0.42 0.58 16 34 H 0.41 5.48 7.59 -40.82 -0.31 5.17 16 35 H 0.09 0.91 7.97 -51.93 -0.41 0.50 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.38 4.69 9.12 45.56 0.42 5.10 16 44 H 0.06 1.44 7.38 -51.93 -0.38 1.06 16 45 H 0.05 1.35 7.43 -51.93 -0.39 0.97 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -34.92 370.96 -9.89 -44.80 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.66 Total: 7.96 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -3.49 Total: 3.42 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.27 Total: -54.02 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.03 Total: -25.11 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.92 -9.89 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084007021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.054 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds