Wall clock time and date at job start Sat Apr 11 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 C 1.50697 * 109.47491 * 179.97438 * 11 10 9 13 13 C 1.38237 * 119.99934 * 269.72981 * 12 11 10 14 14 C 1.38237 * 119.99929 * 179.74074 * 13 12 11 15 15 C 1.38232 * 119.99984 * 0.54853 * 14 13 12 16 16 C 1.50700 * 120.00141 * 179.72496 * 15 14 13 17 17 N 1.46503 * 109.46955 * 269.97650 * 16 15 14 18 18 C 1.34780 * 119.99735 * 179.97438 * 17 16 15 19 19 O 1.21273 * 120.00114 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99729 * 180.02562 * 18 17 16 21 21 H 1.09003 * 115.55376 * 325.58612 * 20 18 17 22 22 C 1.53006 * 117.49747 * 111.25595 * 20 18 17 23 23 C 1.53006 * 117.49771 * 179.91482 * 20 18 17 24 24 H 1.08996 * 117.49924 * 359.97438 * 23 20 18 25 25 C 1.50698 * 117.49762 * 144.99822 * 23 20 18 26 26 O 1.20823 * 120.00058 * 0.02562 * 25 23 20 27 27 O 1.34234 * 120.00020 * 180.02562 * 25 23 20 28 28 C 1.38234 * 119.99954 * 359.70435 * 15 14 13 29 29 C 1.38231 * 120.00088 * 0.02562 * 28 15 14 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 35 35 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 36 36 H 1.08002 * 119.99812 * 359.97438 * 13 12 11 37 37 H 1.08002 * 119.99635 * 180.26919 * 14 13 12 38 38 H 1.09002 * 109.47067 * 29.97435 * 16 15 14 39 39 H 1.08993 * 109.47405 * 149.97849 * 16 15 14 40 40 H 0.96999 * 120.00405 * 359.97438 * 17 16 15 41 41 H 1.09003 * 117.49688 * 214.97456 * 22 20 18 42 42 H 1.08991 * 117.49888 * 359.97438 * 22 20 18 43 43 H 0.96700 * 116.99695 * 179.97438 * 27 25 23 44 44 H 1.08008 * 120.00070 * 180.02562 * 28 15 14 45 45 H 1.08004 * 119.99945 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 6 1.8170 -6.1248 0.0190 13 6 2.1578 -6.7319 -1.1753 14 6 2.8535 -7.9264 -1.1696 15 6 3.1986 -8.5195 0.0304 16 6 3.9517 -9.8249 0.0367 17 7 2.9993 -10.9380 0.0422 18 6 3.4481 -12.2089 0.0478 19 8 4.6404 -12.4309 0.0487 20 6 2.4684 -13.3539 0.0529 21 1 1.5463 -13.1813 0.6080 22 6 2.3830 -14.2162 -1.2082 23 6 3.0404 -14.7731 0.0571 24 1 4.1253 -14.8784 0.0558 25 6 2.2859 -15.8251 0.8284 26 8 1.2694 -15.5331 1.4127 27 8 2.7430 -17.0866 0.8663 28 6 2.8533 -7.9151 1.2247 29 6 2.1625 -6.7178 1.2189 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 0.4367 -4.7574 0.9022 35 1 0.4373 -4.7664 -0.8777 36 1 1.8837 -6.2711 -2.1128 37 1 3.1235 -8.3985 -2.1027 38 1 4.5782 -9.8872 -0.8531 39 1 4.5784 -9.8785 0.9268 40 1 2.0457 -10.7605 0.0418 41 1 1.4048 -14.6112 -1.4825 42 1 3.0351 -13.9550 -2.0415 43 1 2.2251 -17.7261 1.3742 44 1 3.1233 -8.3783 2.1623 45 1 1.8924 -6.2457 2.1521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:24 Heat of formation + Delta-G solvation = -74.902856 kcal Electronic energy + Delta-G solvation = -25894.106250 eV Core-core repulsion = 21877.141873 eV Total energy + Delta-G solvation = -4016.964376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.21103 -40.20006 -39.42755 -37.21556 -36.33169 -35.75976 -34.79214 -32.83907 -30.97524 -30.96041 -28.77892 -26.78510 -25.68979 -24.23765 -23.27286 -22.76780 -21.65045 -21.46333 -20.62078 -20.32739 -18.98848 -18.00469 -17.26074 -17.05601 -16.39621 -16.19892 -15.99209 -15.66470 -15.21347 -15.10035 -14.65362 -14.48992 -14.40624 -13.67398 -13.56547 -13.42605 -13.30339 -13.13642 -12.97030 -12.72173 -12.58363 -12.37118 -12.17201 -11.49131 -11.38050 -11.25032 -11.20711 -11.14737 -11.10676 -10.91199 -10.70645 -10.62475 -10.37788 -10.04976 -9.73698 -9.49531 -8.96733 -8.87857 -8.60260 -6.94075 -5.78011 -3.06981 1.14040 1.37659 1.44471 1.96878 2.25519 2.89507 3.15448 3.42719 3.48454 3.50745 3.74775 3.86571 4.05950 4.26547 4.44449 4.55791 4.58848 4.69678 4.71903 4.93976 4.94943 5.01133 5.08815 5.23601 5.27956 5.38609 5.46772 5.51158 5.58579 5.74254 5.83131 5.88842 5.90346 5.97269 6.05348 6.17808 6.25928 6.42481 6.45591 6.58925 6.79565 6.91080 6.96429 7.06417 7.31724 7.69717 7.75262 8.40913 9.52117 10.09268 10.44141 11.44992 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.001440 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.857254 B =19438.540119 C =19669.217797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.161 3.839 11 C -0.095 4.095 12 C -0.051 4.051 13 C -0.118 4.118 14 C -0.098 4.098 15 C -0.129 4.129 16 C 0.166 3.834 17 N -0.716 5.716 18 C 0.543 3.457 19 O -0.538 6.538 20 C -0.157 4.157 21 H 0.141 0.859 22 C -0.114 4.114 23 C -0.139 4.139 24 H 0.151 0.849 25 C 0.512 3.488 26 O -0.513 6.513 27 O -0.509 6.509 28 C -0.098 4.098 29 C -0.118 4.118 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.406 0.594 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.414 0.586 44 H 0.121 0.879 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.887 -33.813 -1.268 34.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.033 3.967 11 C -0.133 4.133 12 C -0.051 4.051 13 C -0.136 4.136 14 C -0.116 4.116 15 C -0.130 4.130 16 C 0.043 3.957 17 N -0.367 5.367 18 C 0.329 3.671 19 O -0.415 6.415 20 C -0.178 4.178 21 H 0.159 0.841 22 C -0.151 4.151 23 C -0.158 4.158 24 H 0.169 0.831 25 C 0.355 3.645 26 O -0.401 6.401 27 O -0.321 6.321 28 C -0.116 4.116 29 C -0.136 4.136 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.240 0.760 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.274 0.726 44 H 0.139 0.861 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.863 -33.470 -1.329 33.847 hybrid contribution -0.677 0.693 0.487 1.085 sum 4.186 -32.777 -0.842 33.054 Atomic orbital electron populations 1.69673 1.05123 1.25559 1.57899 1.24749 0.95546 0.97724 1.03007 0.86106 0.78810 0.84026 0.77205 1.20523 1.21827 1.21834 1.19289 0.91108 0.84121 1.42543 0.91103 1.42381 1.05895 1.00005 1.89587 1.20584 0.93112 0.84908 0.98061 1.20880 0.98121 0.91050 1.03209 1.20097 0.96286 0.95804 0.92947 1.21130 0.98979 0.95385 0.98148 1.21007 0.97867 0.95623 0.97127 1.19676 1.02622 0.96821 0.93841 1.20196 0.90479 0.81865 1.03149 1.46016 1.10978 1.04928 1.74812 1.19422 0.88400 0.83237 0.76061 1.90732 1.16445 1.84664 1.49652 1.22337 1.01668 0.89259 1.04584 0.84129 1.23140 1.03037 0.98480 0.90473 1.21623 1.01834 0.90440 1.01893 0.83134 1.22180 0.82451 0.82080 0.77836 1.90749 1.24982 1.81532 1.42826 1.84499 1.57027 1.20307 1.70223 1.21019 0.97862 0.95524 0.97233 1.21131 0.98966 0.95405 0.98113 0.93553 0.78278 0.96233 0.96247 0.90759 0.90758 0.85674 0.86146 0.90506 0.90530 0.75965 0.86690 0.86249 0.72644 0.86147 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.74 5.60 -59.91 -0.34 -19.08 16 10 C 0.16 3.25 6.24 -4.04 -0.03 3.22 16 11 C -0.09 -1.50 5.46 -27.89 -0.15 -1.65 16 12 C -0.05 -0.67 5.13 -104.62 -0.54 -1.21 16 13 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 14 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 15 C -0.13 -1.23 5.25 -104.63 -0.55 -1.78 16 16 C 0.17 1.41 5.80 -5.19 -0.03 1.38 16 17 N -0.72 -5.30 5.55 -61.47 -0.34 -5.64 16 18 C 0.54 4.68 7.61 -10.99 -0.08 4.59 16 19 O -0.54 -6.50 16.26 5.56 0.09 -6.41 16 20 C -0.16 -1.00 5.70 -91.77 -0.52 -1.52 16 21 H 0.14 0.83 7.67 -51.93 -0.40 0.43 16 22 C -0.11 -0.52 9.94 -26.69 -0.27 -0.78 16 23 C -0.14 -0.88 5.82 -91.73 -0.53 -1.41 16 24 H 0.15 1.01 7.67 -51.93 -0.40 0.62 16 25 C 0.51 3.61 8.11 36.00 0.29 3.90 16 26 O -0.51 -5.03 17.02 -18.75 -0.32 -5.34 16 27 O -0.51 -2.48 13.42 -39.27 -0.53 -3.01 16 28 C -0.10 -1.00 9.70 -39.59 -0.38 -1.39 16 29 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 30 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.38 10.18 7.67 -40.82 -0.31 9.87 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.41 2.32 8.46 -40.82 -0.35 1.98 16 41 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.41 0.26 9.10 45.56 0.41 0.68 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -35.70 395.00 -9.62 -45.32 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.65 Total: 7.39 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -4.19 Total: -9.06 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.05 Total: -52.29 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.76 Total: -14.76 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.70 -9.62 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.585 kcal (2) G-P(sol) polarization free energy of solvation -35.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds