Wall clock time and date at job start Sat Apr 11 2020 03:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 C 1.50697 * 109.47491 * 179.97438 * 11 10 9 13 13 C 1.38237 * 119.99934 * 269.72981 * 12 11 10 14 14 C 1.38237 * 119.99929 * 179.74074 * 13 12 11 15 15 C 1.38232 * 119.99984 * 0.54853 * 14 13 12 16 16 C 1.50700 * 120.00141 * 179.72496 * 15 14 13 17 17 N 1.46503 * 109.46955 * 269.97650 * 16 15 14 18 18 C 1.34780 * 119.99735 * 179.97438 * 17 16 15 19 19 O 1.21273 * 120.00114 * 0.02562 * 18 17 16 20 20 C 1.50697 * 119.99729 * 180.02562 * 18 17 16 21 21 H 1.09003 * 115.55376 * 325.58612 * 20 18 17 22 22 C 1.53006 * 117.49747 * 111.25595 * 20 18 17 23 23 C 1.53006 * 117.49771 * 179.91482 * 20 18 17 24 24 H 1.08996 * 117.49924 * 359.97438 * 23 20 18 25 25 C 1.50698 * 117.49762 * 144.99822 * 23 20 18 26 26 O 1.20823 * 120.00058 * 0.02562 * 25 23 20 27 27 O 1.34234 * 120.00020 * 180.02562 * 25 23 20 28 28 C 1.38234 * 119.99954 * 359.70435 * 15 14 13 29 29 C 1.38231 * 120.00088 * 0.02562 * 28 15 14 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 33 33 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 34 34 H 1.09004 * 109.47066 * 299.99732 * 11 10 9 35 35 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 36 36 H 1.08002 * 119.99812 * 359.97438 * 13 12 11 37 37 H 1.08002 * 119.99635 * 180.26919 * 14 13 12 38 38 H 1.09002 * 109.47067 * 29.97435 * 16 15 14 39 39 H 1.08993 * 109.47405 * 149.97849 * 16 15 14 40 40 H 0.96999 * 120.00405 * 359.97438 * 17 16 15 41 41 H 1.09003 * 117.49688 * 214.97456 * 22 20 18 42 42 H 1.08991 * 117.49888 * 359.97438 * 22 20 18 43 43 H 0.96700 * 116.99695 * 179.97438 * 27 25 23 44 44 H 1.08008 * 120.00070 * 180.02562 * 28 15 14 45 45 H 1.08004 * 119.99945 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 6 1.8170 -6.1248 0.0190 13 6 2.1578 -6.7319 -1.1753 14 6 2.8535 -7.9264 -1.1696 15 6 3.1986 -8.5195 0.0304 16 6 3.9517 -9.8249 0.0367 17 7 2.9993 -10.9380 0.0422 18 6 3.4481 -12.2089 0.0478 19 8 4.6404 -12.4309 0.0487 20 6 2.4684 -13.3539 0.0529 21 1 1.5463 -13.1813 0.6080 22 6 2.3830 -14.2162 -1.2082 23 6 3.0404 -14.7731 0.0571 24 1 4.1253 -14.8784 0.0558 25 6 2.2859 -15.8251 0.8284 26 8 1.2694 -15.5331 1.4127 27 8 2.7430 -17.0866 0.8663 28 6 2.8533 -7.9151 1.2247 29 6 2.1625 -6.7178 1.2189 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6849 -3.7190 -0.8822 33 1 2.6842 -3.7101 0.8977 34 1 0.4367 -4.7574 0.9022 35 1 0.4373 -4.7664 -0.8777 36 1 1.8837 -6.2711 -2.1128 37 1 3.1235 -8.3985 -2.1027 38 1 4.5782 -9.8872 -0.8531 39 1 4.5784 -9.8785 0.9268 40 1 2.0457 -10.7605 0.0418 41 1 1.4048 -14.6112 -1.4825 42 1 3.0351 -13.9550 -2.0415 43 1 2.2251 -17.7261 1.3742 44 1 3.1233 -8.3783 2.1623 45 1 1.8924 -6.2457 2.1521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:23 Heat of formation + Delta-G solvation = -98.949950 kcal Electronic energy + Delta-G solvation = -25895.149010 eV Core-core repulsion = 21877.141873 eV Total energy + Delta-G solvation = -4018.007136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75748 -40.89178 -40.25909 -37.73203 -37.20112 -36.76280 -35.98768 -34.29638 -32.55889 -31.83849 -30.06470 -27.68989 -26.56198 -25.43993 -24.37302 -23.63518 -23.07886 -21.99669 -21.59078 -21.00049 -19.50646 -19.22892 -18.53508 -17.74552 -17.07160 -16.85827 -16.84175 -16.70235 -16.41591 -16.02041 -15.89469 -15.42466 -15.17526 -15.08205 -15.01026 -14.83863 -14.27798 -13.75615 -13.72498 -13.60509 -13.49841 -13.31056 -12.95739 -12.89784 -12.65933 -12.51621 -12.37400 -12.11704 -12.02730 -11.95214 -11.82550 -11.79760 -11.69291 -11.68328 -11.08759 -10.96954 -10.17504 -9.81589 -9.55584 -9.03529 -7.97585 -5.27286 0.25737 0.51073 0.93314 1.37252 1.47080 1.47807 1.58236 1.77665 2.30551 2.54614 2.66635 2.88964 3.36248 3.39266 3.60995 3.63531 3.77688 3.84932 3.88302 4.09040 4.15014 4.18769 4.29325 4.37752 4.45287 4.50045 4.56998 4.60427 4.70602 4.74840 4.79001 4.81669 4.91248 5.07220 5.11419 5.25473 5.26650 5.32082 5.45638 5.50004 5.53005 5.62012 5.78895 6.07392 6.25093 6.45974 6.93017 7.12722 7.31207 8.05543 8.29910 9.26071 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.038566 B = 0.001440 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.857254 B =19438.540119 C =19669.217797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.747 5.747 10 C 0.162 3.838 11 C -0.080 4.080 12 C -0.071 4.071 13 C -0.126 4.126 14 C -0.094 4.094 15 C -0.116 4.116 16 C 0.170 3.830 17 N -0.707 5.707 18 C 0.545 3.455 19 O -0.576 6.576 20 C -0.162 4.162 21 H 0.147 0.853 22 C -0.092 4.092 23 C -0.149 4.149 24 H 0.145 0.855 25 C 0.518 3.482 26 O -0.545 6.545 27 O -0.506 6.506 28 C -0.097 4.097 29 C -0.127 4.127 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.415 0.585 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.432 0.568 44 H 0.138 0.862 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 -35.372 -1.798 35.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.092 0.908 9 N -0.390 5.390 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.112 4.112 15 C -0.116 4.116 16 C 0.047 3.953 17 N -0.358 5.358 18 C 0.332 3.668 19 O -0.456 6.456 20 C -0.183 4.183 21 H 0.164 0.836 22 C -0.129 4.129 23 C -0.169 4.169 24 H 0.163 0.837 25 C 0.362 3.638 26 O -0.436 6.436 27 O -0.320 6.320 28 C -0.115 4.115 29 C -0.145 4.145 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.161 0.839 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.252 0.748 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.294 0.706 44 H 0.156 0.844 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.668 -35.073 -1.858 35.577 hybrid contribution -0.862 1.027 0.659 1.494 sum 4.806 -34.046 -1.200 34.405 Atomic orbital electron populations 1.69823 1.06610 1.26139 1.59347 1.25588 0.96451 1.01144 1.03429 0.85054 0.78184 0.79586 0.76816 1.19117 1.21781 1.21842 1.19677 0.91512 0.85412 1.41527 0.90800 1.42600 1.05720 1.01221 1.89500 1.20699 0.93810 0.84474 0.97492 1.20639 0.97198 0.90891 1.02999 1.19909 0.97860 0.95217 0.94198 1.21232 0.99298 0.96117 0.97722 1.21217 0.96873 0.94812 0.98285 1.19775 1.01497 0.96863 0.93479 1.20107 0.90463 0.81552 1.03178 1.45915 1.11379 1.04421 1.74094 1.19734 0.88158 0.83824 0.75117 1.90717 1.18107 1.85203 1.51554 1.22271 1.01183 0.88454 1.06358 0.83570 1.23284 1.03703 0.96214 0.89677 1.21643 1.01570 0.90316 1.03366 0.83726 1.22248 0.81821 0.82607 0.77095 1.90738 1.26425 1.82137 1.44289 1.84467 1.57211 1.19986 1.70321 1.21206 0.97114 0.94816 0.98384 1.21210 0.99411 0.96169 0.97706 0.93880 0.79307 0.96389 0.96541 0.91068 0.90904 0.85419 0.83930 0.90304 0.90834 0.74792 0.85023 0.85341 0.70564 0.84384 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.51 13.06 21.65 0.28 -59.22 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.97 46.32 29.55 68.60 2.03 48.35 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 7 C -0.25 -14.21 9.99 84.03 0.84 -13.37 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -38.74 5.60 -343.46 -1.92 -40.67 16 10 C 0.16 6.58 6.24 86.38 0.54 7.12 16 11 C -0.08 -2.53 5.46 29.85 0.16 -2.37 16 12 C -0.07 -1.85 5.13 -19.87 -0.10 -1.95 16 13 C -0.13 -2.83 9.70 22.27 0.22 -2.61 16 14 C -0.09 -1.66 9.70 22.27 0.22 -1.45 16 15 C -0.12 -1.94 5.25 -19.87 -0.10 -2.05 16 16 C 0.17 2.54 5.80 85.63 0.50 3.03 16 17 N -0.71 -9.03 5.55 -466.79 -2.59 -11.62 16 18 C 0.54 8.58 7.61 87.66 0.67 9.25 16 19 O -0.58 -13.41 16.26 -3.01 -0.05 -13.45 16 20 C -0.16 -1.80 5.70 -11.54 -0.07 -1.87 16 21 H 0.15 1.49 7.67 -2.39 -0.02 1.47 16 22 C -0.09 -0.63 9.94 30.62 0.30 -0.32 16 23 C -0.15 -1.71 5.82 -11.51 -0.07 -1.78 16 24 H 0.15 1.85 7.67 -2.39 -0.02 1.84 16 25 C 0.52 6.71 8.11 71.24 0.58 7.29 16 26 O -0.54 -10.19 17.02 21.97 0.37 -9.82 16 27 O -0.51 -4.21 13.42 -51.46 -0.69 -4.90 16 28 C -0.10 -1.80 9.70 22.27 0.22 -1.59 16 29 C -0.13 -2.94 9.70 22.27 0.22 -2.72 16 30 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.37 20.40 7.67 -92.71 -0.71 19.69 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.73 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 2.27 8.09 -2.38 -0.02 2.25 16 35 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 36 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 37 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 38 H 0.08 1.20 8.09 -2.39 -0.02 1.18 16 39 H 0.07 1.19 8.08 -2.39 -0.02 1.17 16 40 H 0.42 3.78 8.46 -92.71 -0.78 2.99 16 41 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.43 -0.09 9.10 -74.06 -0.67 -0.77 16 44 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -76.44 395.00 0.88 -75.56 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -1.13 Total: 24.97 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 4.58 Total: -9.19 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -4.23 Total: -111.51 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.37 Total: -28.18 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -76.44 0.88 -75.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.391 kcal (2) G-P(sol) polarization free energy of solvation -76.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds