Wall clock time and date at job start Sat Apr 11 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00014 * 2 1 4 4 H 1.48501 * 109.46741 * 89.99795 * 3 2 1 5 5 H 1.48493 * 109.47215 * 209.99722 * 3 2 1 6 6 H 1.48496 * 109.46927 * 329.99970 * 3 2 1 7 7 C 1.38814 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99721 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00248 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99760 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.91204 * 34.31092 * 10 9 7 12 12 C 1.53870 * 109.92460 * 273.18700 * 10 9 7 13 13 C 1.54133 * 106.49411 * 242.35093 * 12 10 9 14 14 C 1.54840 * 104.63512 * 335.50466 * 13 12 10 15 15 H 1.09007 * 113.73207 * 273.72025 * 14 13 12 16 16 C 1.54208 * 108.04671 * 146.45003 * 14 13 12 17 17 N 1.49666 * 106.35245 * 272.09963 * 16 14 13 18 18 C 1.34776 * 125.34911 * 181.57487 * 17 16 14 19 19 O 1.21274 * 120.00052 * 175.54683 * 18 17 16 20 20 C 1.50707 * 119.99840 * 355.54582 * 18 17 16 21 21 C 1.52999 * 115.55132 * 273.35776 * 20 18 17 22 22 F 1.39895 * 109.47446 * 54.81151 * 21 20 18 23 23 F 1.39896 * 109.47171 * 174.81662 * 21 20 18 24 24 F 1.39901 * 109.46739 * 294.81179 * 21 20 18 25 25 C 1.52997 * 117.49539 * 127.65019 * 20 18 17 26 26 C 1.53000 * 117.49812 * 59.02716 * 20 18 17 27 27 C 1.47340 * 109.02907 * 2.09473 * 17 16 14 28 28 C 1.53718 * 109.91681 * 155.42000 * 10 9 7 29 29 H 1.09005 * 112.96340 * 264.46312 * 28 10 9 30 30 H 0.97000 * 119.99610 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00056 * 0.02562 * 9 7 2 32 32 H 1.09001 * 110.05150 * 1.61200 * 12 10 9 33 33 H 1.09003 * 110.05176 * 123.04434 * 12 10 9 34 34 H 1.09003 * 110.40205 * 94.29289 * 13 12 10 35 35 H 1.08996 * 110.40306 * 216.59216 * 13 12 10 36 36 H 1.09004 * 109.82226 * 32.52547 * 16 14 13 37 37 H 1.09003 * 109.81724 * 153.46390 * 16 14 13 38 38 H 1.09003 * 117.50357 * 359.97438 * 25 20 18 39 39 H 1.09002 * 117.49827 * 145.02559 * 25 20 18 40 40 H 1.08999 * 117.49966 * 214.97934 * 26 20 18 41 41 H 1.08998 * 117.49650 * 359.97438 * 26 20 18 42 42 H 1.09002 * 110.29631 * 216.63574 * 27 17 16 43 43 H 1.08998 * 110.37996 * 94.53851 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.6999 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0011 11 1 3.5644 -3.2162 -0.5755 12 6 4.3052 -2.9636 1.4460 13 6 5.8257 -3.0022 1.6956 14 6 6.4498 -3.1538 0.2867 15 1 6.5276 -4.1877 -0.0497 16 6 7.7920 -2.3946 0.2745 17 7 7.4740 -0.9827 -0.1067 18 6 8.3773 0.0055 -0.2614 19 8 8.0210 1.0972 -0.6515 20 6 9.8301 -0.2460 0.0505 21 6 10.2377 -0.0356 1.5101 22 9 9.4225 -0.8138 2.3388 23 9 11.5734 -0.4150 1.6806 24 9 10.0901 1.3145 1.8455 25 6 10.8557 0.1085 -1.0280 26 6 10.5375 -1.3575 -0.7273 27 6 6.0163 -0.8465 -0.2725 28 6 5.5119 -2.2679 -0.6008 29 1 5.5585 -2.5144 -1.6616 30 1 -0.4849 0.8401 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.8294 -2.2736 2.1429 33 1 3.8814 -3.9613 1.5604 34 1 6.1582 -2.0741 2.1607 35 1 6.0863 -3.8550 2.3225 36 1 8.2526 -2.4423 1.2613 37 1 8.4586 -2.8344 -0.4674 38 1 10.4797 0.5233 -1.9633 39 1 11.8212 0.4918 -0.6978 40 1 11.2935 -1.9387 -0.1993 41 1 9.9519 -1.9071 -1.4643 42 1 5.7911 -0.1662 -1.0939 43 1 5.5611 -0.4876 0.6506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026363421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:46 Heat of formation + Delta-G solvation = -131.487387 kcal Electronic energy + Delta-G solvation = -30635.474474 eV Core-core repulsion = 26074.199669 eV Total energy + Delta-G solvation = -4561.274806 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.43570 -47.99346 -47.86384 -40.76784 -39.18332 -36.93671 -35.24225 -33.35261 -31.28898 -29.58480 -28.86631 -27.64239 -25.97219 -24.35969 -23.15837 -22.97756 -22.31045 -19.95728 -19.81266 -19.02541 -18.74939 -18.63079 -18.27217 -17.63034 -16.75869 -15.97466 -15.77328 -15.13772 -14.92823 -14.75195 -14.71276 -14.41107 -14.33182 -14.23924 -14.09177 -13.98426 -13.63561 -13.36991 -13.05427 -12.76844 -12.65402 -12.54406 -12.27516 -12.15142 -12.09390 -11.55988 -11.37253 -11.29598 -10.91188 -10.77340 -10.66722 -10.48678 -10.43816 -10.34772 -10.06777 -9.86370 -9.57989 -8.94311 -8.74235 -7.29569 -5.78763 -3.14979 1.91600 2.49225 2.54935 2.80780 3.34216 3.39135 3.43368 3.48364 3.67285 3.88043 3.90061 4.28555 4.30310 4.39147 4.57033 4.58812 4.74694 4.93035 4.96313 5.17818 5.26555 5.28357 5.34859 5.35953 5.44703 5.49910 5.53371 5.71001 5.72792 5.80076 5.87397 5.98865 6.15102 6.22598 6.23980 6.39429 6.49079 6.69806 6.95802 7.28836 7.89304 7.97557 8.40261 9.17924 9.90875 10.08812 11.39352 Molecular weight = 332.15amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.003975 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.705745 B = 7042.579231 C = 7751.356534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.009 3.991 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.289 1.289 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.749 5.749 10 C 0.188 3.812 11 H 0.064 0.936 12 C -0.145 4.145 13 C -0.118 4.118 14 C -0.102 4.102 15 H 0.106 0.894 16 C 0.101 3.899 17 N -0.605 5.605 18 C 0.565 3.435 19 O -0.516 6.516 20 C -0.234 4.234 21 C 0.502 3.498 22 F -0.172 7.172 23 F -0.176 7.176 24 F -0.170 7.170 25 C -0.116 4.116 26 C -0.136 4.136 27 C 0.113 3.887 28 C -0.105 4.105 29 H 0.093 0.907 30 H 0.260 0.740 31 H 0.362 0.638 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.081 0.919 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.791 -7.606 0.297 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.187 4.187 3 Si 0.705 3.295 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.215 1.215 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.394 5.394 10 C 0.078 3.922 11 H 0.082 0.918 12 C -0.185 4.185 13 C -0.156 4.156 14 C -0.122 4.122 15 H 0.124 0.876 16 C -0.021 4.021 17 N -0.339 5.339 18 C 0.350 3.650 19 O -0.391 6.391 20 C -0.239 4.239 21 C 0.447 3.553 22 F -0.153 7.153 23 F -0.158 7.158 24 F -0.151 7.151 25 C -0.153 4.153 26 C -0.173 4.173 27 C -0.008 4.008 28 C -0.125 4.125 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.197 0.803 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.100 0.900 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 25.364 -6.979 0.107 26.307 hybrid contribution 0.541 1.325 0.469 1.506 sum 25.904 -5.654 0.576 26.521 Atomic orbital electron populations 1.69692 1.05081 1.25857 1.57342 1.24639 0.95162 0.97059 1.01856 0.86703 0.79442 0.85290 0.78025 1.20992 1.20158 1.21534 1.19072 0.80557 0.94699 1.43274 0.89064 1.43058 1.04152 1.01926 1.90224 1.20650 0.88926 0.89488 0.93127 0.91815 1.22932 0.94024 1.01302 1.00283 1.22446 0.96855 1.01292 0.94994 1.23216 0.92768 0.98987 0.97183 0.87609 1.22743 0.98150 0.80469 1.00764 1.49087 1.07548 1.09940 1.67300 1.18288 0.83974 0.83762 0.78955 1.90776 1.79531 1.23370 1.45446 1.22473 0.96060 1.14109 0.91250 1.18941 0.74569 0.74487 0.87299 1.93209 1.72698 1.74869 1.74546 1.93175 1.35246 1.91213 1.96122 1.93249 1.95309 1.33055 1.93477 1.23180 0.97173 0.97549 0.97370 1.23342 1.01246 0.91914 1.00781 1.22262 0.77465 0.98420 1.02677 1.23295 0.96354 0.93137 0.99711 0.88827 0.93016 0.80295 0.90633 0.92432 0.91826 0.91984 0.90256 0.91211 0.86192 0.86467 0.86274 0.86289 0.90021 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.20 13.97 55.49 0.78 -28.43 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 22.61 27.74 -169.99 -4.71 17.90 16 4 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.28 -6.83 6.52 56.52 0.37 -6.46 16 6 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.25 -6.78 10.44 -15.06 -0.16 -6.94 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.75 -17.06 4.60 -52.63 -0.24 -17.30 16 10 C 0.19 3.31 3.23 -67.10 -0.22 3.10 16 11 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 12 C -0.14 -2.28 6.57 -25.69 -0.17 -2.45 16 13 C -0.12 -1.46 5.57 -25.17 -0.14 -1.60 16 14 C -0.10 -1.10 4.17 -87.08 -0.36 -1.46 16 15 H 0.11 0.89 8.14 -51.92 -0.42 0.47 16 16 C 0.10 1.00 5.41 -1.65 -0.01 1.00 16 17 N -0.61 -8.25 3.39 -168.82 -0.57 -8.82 16 18 C 0.57 8.25 6.79 -10.98 -0.07 8.17 16 19 O -0.52 -9.71 17.30 5.56 0.10 -9.61 16 20 C -0.23 -2.46 1.48 -155.66 -0.23 -2.69 16 21 C 0.50 5.62 3.06 37.16 0.11 5.74 16 22 F -0.17 -2.04 15.47 2.25 0.03 -2.00 16 23 F -0.18 -1.66 15.90 2.25 0.04 -1.63 16 24 F -0.17 -2.28 17.29 2.25 0.04 -2.24 16 25 C -0.12 -0.89 9.67 -26.73 -0.26 -1.15 16 26 C -0.14 -0.88 8.37 -26.73 -0.22 -1.10 16 27 C 0.11 1.84 4.44 -2.87 -0.01 1.83 16 28 C -0.11 -1.49 4.06 -87.60 -0.36 -1.84 16 29 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 31 H 0.36 8.32 3.19 -40.82 -0.13 8.19 16 32 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.87 7.32 -51.93 -0.38 0.49 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.76 6.21 -51.93 -0.32 0.44 16 37 H 0.07 0.52 6.41 -51.93 -0.33 0.19 16 38 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.12 0.71 7.94 -51.93 -0.41 0.30 16 40 H 0.12 0.56 7.63 -51.93 -0.40 0.17 16 41 H 0.12 0.68 7.13 -51.93 -0.37 0.31 16 42 H 0.08 1.50 7.98 -51.93 -0.41 1.08 16 43 H 0.08 1.46 6.31 -51.93 -0.33 1.14 16 LS Contribution 348.31 15.07 5.25 5.25 Total: -1.00 -33.39 348.31 -7.11 -40.51 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.62 Total: 5.63 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.19 Total: 0.75 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.04 Total: -54.55 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.10 Total: -9.61 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.11 Total: -5.87 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.39 -7.11 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026363421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.981 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds