Wall clock time and date at job start Sat Apr 11 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.66618 * 2 1 4 4 C 1.54701 * 110.74561 * 236.78772 * 2 1 3 5 5 C 1.51662 * 101.93224 * 216.14956 * 4 2 1 6 6 C 1.37704 * 132.10295 * 195.78847 * 5 4 2 7 7 C 1.38907 * 119.92737 * 179.45939 * 6 5 4 8 8 N 1.40152 * 120.19306 * 179.90910 * 7 6 5 9 9 C 1.34776 * 119.99317 * 35.05662 * 8 7 6 10 10 O 1.21583 * 120.00504 * 355.35378 * 9 8 7 11 11 N 1.34779 * 119.99282 * 175.35582 * 9 8 7 12 12 C 1.47015 * 125.65043 * 0.02562 * 11 9 8 13 13 C 1.54330 * 107.27068 * 181.03881 * 12 11 9 14 14 C 1.55152 * 102.94206 * 22.19562 * 13 12 11 15 15 O 1.42897 * 111.00539 * 82.57122 * 14 13 12 16 16 C 1.50699 * 111.00449 * 206.41946 * 14 13 12 17 17 H 1.08003 * 120.00123 * 0.02562 * 16 14 13 18 18 C 1.37877 * 119.99842 * 179.97438 * 16 14 13 19 19 N 1.31510 * 120.00125 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99795 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47100 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47107 * 120.00534 * 20 18 16 23 23 H 1.48509 * 109.47014 * 240.00529 * 20 18 16 24 24 C 1.47429 * 125.64574 * 179.97438 * 11 9 8 25 25 C 1.38861 * 119.61601 * 0.18190 * 7 6 5 26 26 C 1.37866 * 120.27878 * 359.62038 * 25 7 6 27 27 C 1.38873 * 107.04300 * 15.49098 * 5 4 2 28 28 O 1.36240 * 111.21737 * 0.93871 * 27 5 4 29 29 H 1.09001 * 109.47181 * 183.21851 * 1 2 3 30 30 H 1.09002 * 109.46650 * 303.21336 * 1 2 3 31 31 H 1.08991 * 109.47607 * 63.21192 * 1 2 3 32 32 H 1.09004 * 110.94106 * 97.99463 * 4 2 1 33 33 H 1.08993 * 110.94062 * 334.31089 * 4 2 1 34 34 H 1.08000 * 120.03563 * 359.43151 * 6 5 4 35 35 H 0.96994 * 119.99744 * 215.05060 * 8 7 6 36 36 H 1.08999 * 109.88377 * 61.62726 * 12 11 9 37 37 H 1.08997 * 109.88888 * 300.45817 * 12 11 9 38 38 H 1.09003 * 110.71707 * 140.55881 * 13 12 11 39 39 H 1.09001 * 110.72216 * 263.82802 * 13 12 11 40 40 H 0.96704 * 114.00525 * 179.97438 * 15 14 13 41 41 H 0.97002 * 120.00303 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36708 * 37.05189 * 24 11 9 43 43 H 1.08997 * 110.45883 * 274.77806 * 24 11 9 44 44 H 1.08006 * 119.85641 * 179.87946 * 25 7 6 45 45 H 1.08000 * 119.83276 * 180.32410 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0780 -0.7924 -1.2104 5 6 3.3095 -1.4529 -0.6212 6 6 4.3998 -2.0596 -1.2038 7 6 5.4102 -2.5823 -0.4066 8 7 6.5215 -3.2026 -0.9936 9 6 7.0117 -2.7416 -2.1614 10 8 6.4405 -1.8429 -2.7481 11 7 8.1351 -3.2771 -2.6787 12 6 8.9221 -4.3636 -2.0775 13 6 10.1277 -4.6237 -3.0052 14 6 10.2614 -3.2884 -3.7839 15 8 10.9876 -2.3217 -3.0222 16 6 10.9063 -3.5091 -5.1279 17 1 11.2044 -4.5031 -5.4271 18 6 11.1148 -2.4422 -5.9760 19 7 10.7513 -1.2319 -5.6118 20 14 11.9136 -2.7159 -7.6423 21 1 12.2259 -4.1579 -7.8106 22 1 10.9822 -2.2830 -8.7148 23 1 13.1674 -1.9243 -7.7262 24 6 8.7777 -2.8710 -3.9419 25 6 5.3101 -2.4916 0.9754 26 6 4.2189 -1.8799 1.5547 27 6 3.2008 -1.3582 0.7600 28 8 2.0431 -0.7378 1.1221 29 1 -0.3633 -1.0260 0.0577 30 1 -0.3633 0.5629 0.8598 31 1 -0.3634 0.4631 -0.9173 32 1 2.3484 -0.1210 -2.0254 33 1 1.3581 -1.5391 -1.5453 34 1 4.4691 -2.1294 -2.2793 35 1 6.9377 -3.9635 -0.5594 36 1 8.3127 -5.2641 -2.0006 37 1 9.2723 -4.0650 -1.0895 38 1 11.0272 -4.8218 -2.4222 39 1 9.9192 -5.4484 -3.6867 40 1 11.0970 -1.4708 -3.4684 41 1 10.8983 -0.4812 -6.2083 42 1 8.6995 -1.7923 -4.0777 43 1 8.3244 -3.3925 -4.7849 44 1 6.0925 -2.8984 1.5990 45 1 4.1509 -1.8087 2.6302 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366895430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:57 Heat of formation + Delta-G solvation = -75.191967 kcal Electronic energy + Delta-G solvation = -28360.168897 eV Core-core repulsion = 24343.191984 eV Total energy + Delta-G solvation = -4016.976913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22683 -40.03956 -38.11838 -36.90088 -34.39885 -33.98752 -33.24159 -32.18477 -31.08409 -30.36850 -28.76750 -27.81830 -26.69351 -25.10373 -23.15805 -22.29110 -21.79776 -21.53710 -19.71192 -19.57687 -17.99673 -17.58231 -17.20429 -16.82864 -16.60426 -15.46066 -15.33059 -15.12672 -14.52567 -14.47659 -14.27182 -13.92353 -13.68131 -13.31816 -13.22894 -13.06333 -12.98787 -12.89230 -12.61374 -12.43486 -12.28918 -12.15715 -11.65845 -11.57768 -11.43669 -11.24906 -11.08669 -10.84317 -10.76380 -10.64170 -10.50195 -10.22343 -9.77925 -9.58094 -9.44782 -8.81577 -8.72919 -8.44254 -7.91888 -7.51647 -6.32851 -4.42571 1.26245 1.41802 2.89033 3.15484 3.18038 3.26396 3.29426 3.46166 3.84359 4.18161 4.24852 4.35472 4.44499 4.74799 4.90214 4.93926 4.95727 5.06076 5.25549 5.28839 5.33438 5.38655 5.53001 5.57426 5.66023 5.71302 5.75171 5.79257 5.90894 5.94457 5.97830 6.09423 6.37422 6.41658 6.44731 6.48914 6.65949 6.80031 6.85254 6.88008 7.15588 7.24634 7.27052 7.48694 7.70792 7.95672 8.34660 8.61370 8.93642 9.27490 9.42577 10.74392 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.002508 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.976251 B =11162.940743 C =11996.906983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.077 3.923 3 H 0.085 0.915 4 C -0.105 4.105 5 C -0.155 4.155 6 C -0.071 4.071 7 C 0.151 3.849 8 N -0.688 5.688 9 C 0.715 3.285 10 O -0.581 6.581 11 N -0.621 5.621 12 C 0.102 3.898 13 C -0.116 4.116 14 C 0.249 3.751 15 O -0.584 6.584 16 C -0.537 4.537 17 H 0.068 0.932 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.110 3.890 25 C -0.118 4.118 26 C -0.118 4.118 27 C 0.079 3.921 28 O -0.306 6.306 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.404 0.596 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.387 0.613 41 H 0.271 0.729 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.133 0.867 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.811 -2.260 11.492 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.021 3.979 3 H 0.103 0.897 4 C -0.143 4.143 5 C -0.157 4.157 6 C -0.092 4.092 7 C 0.056 3.944 8 N -0.336 5.336 9 C 0.417 3.583 10 O -0.459 6.459 11 N -0.357 5.357 12 C -0.022 4.022 13 C -0.154 4.154 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.133 4.133 19 N -0.533 5.533 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.012 4.012 25 C -0.139 4.139 26 C -0.138 4.138 27 C 0.034 3.966 28 O -0.221 6.221 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.163 0.837 35 H 0.240 0.760 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.239 0.761 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.151 0.849 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.311 -1.872 11.591 19.294 hybrid contribution 0.676 0.062 -1.237 1.411 sum -14.635 -1.810 10.353 18.018 Atomic orbital electron populations 1.21870 0.92266 1.03387 1.02998 1.23340 0.95490 0.95508 0.83601 0.89720 1.21849 0.94608 0.99360 0.98434 1.20593 0.97176 1.04265 0.93651 1.20486 0.89888 0.97283 1.01522 1.17298 0.87341 0.98681 0.91124 1.42644 1.31610 1.35213 1.24178 1.15506 0.80563 0.81841 0.80373 1.90878 1.60819 1.32696 1.61513 1.47944 1.24044 1.37876 1.25853 1.22003 0.93560 0.89001 0.97611 1.22607 0.95772 0.99224 0.97799 1.19608 0.86024 0.84519 0.89029 1.86060 1.77306 1.27908 1.48183 1.21523 1.40838 0.94950 1.00259 0.91356 1.25095 0.94286 0.95003 0.98906 1.69573 1.46666 0.99277 1.37778 0.86329 0.79032 0.78529 0.82895 1.19558 1.20743 1.20714 1.23247 0.94689 1.01709 0.81508 1.20571 0.98619 1.01845 0.92863 1.19909 0.91854 1.02582 0.99417 1.19456 0.87604 0.96813 0.92731 1.86813 1.34730 1.62904 1.37618 0.91457 0.91456 0.90335 0.88945 0.89163 0.83723 0.76009 0.92911 0.92358 0.90606 0.90367 0.76109 0.91873 0.89930 0.92213 0.84937 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.59 37.16 0.36 -0.69 16 2 C 0.08 0.76 4.25 -25.84 -0.11 0.65 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.14 6.64 -26.51 -0.18 -1.32 16 5 C -0.16 -2.18 6.27 -104.11 -0.65 -2.83 16 6 C -0.07 -1.14 8.69 -39.53 -0.34 -1.48 16 7 C 0.15 2.28 6.31 -83.57 -0.53 1.75 16 8 N -0.69 -10.60 5.31 -14.16 -0.08 -10.68 16 9 C 0.71 14.22 8.34 -86.92 -0.72 13.49 16 10 O -0.58 -13.51 14.04 5.29 0.07 -13.44 16 11 N -0.62 -12.46 3.33 -176.22 -0.59 -13.04 16 12 C 0.10 1.68 6.15 -3.06 -0.02 1.66 16 13 C -0.12 -2.20 6.13 -24.90 -0.15 -2.35 16 14 C 0.25 5.87 0.89 -89.61 -0.08 5.79 16 15 O -0.58 -14.78 13.18 -35.23 -0.46 -15.25 16 16 C -0.54 -13.62 8.25 -34.44 -0.28 -13.90 16 17 H 0.07 1.69 7.76 -52.48 -0.41 1.28 16 18 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 19 N -0.89 -23.50 10.71 55.43 0.59 -22.90 16 20 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.11 2.59 5.63 -2.51 -0.01 2.58 16 25 C -0.12 -1.46 9.94 -39.49 -0.39 -1.86 16 26 C -0.12 -1.45 10.06 -39.33 -0.40 -1.85 16 27 C 0.08 1.08 7.03 -38.95 -0.27 0.80 16 28 O -0.31 -3.90 10.82 -20.51 -0.22 -4.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.86 7.93 -51.93 -0.41 0.45 16 34 H 0.15 2.59 6.23 -52.49 -0.33 2.26 16 35 H 0.40 4.96 7.82 -40.82 -0.32 4.64 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.39 8.01 -51.93 -0.42 0.97 16 40 H 0.39 10.20 6.93 45.56 0.32 10.52 16 41 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.08 2.21 7.64 -51.93 -0.40 1.81 16 43 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 44 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -30.34 367.64 -9.79 -40.12 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -5.74 Total: 16.65 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -3.88 Total: 2.15 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.07 Total: -46.63 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.61 Total: -32.80 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.34 -9.79 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366895430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.068 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds