Wall clock time and date at job start Sat Apr 11 2020 03:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47120 * 2 1 4 4 C 1.45775 * 117.95695 * 270.25141 * 3 2 1 5 5 C 1.52923 * 110.41854 * 199.30709 * 4 3 2 6 6 C 1.53337 * 108.67874 * 309.03210 * 5 4 3 7 7 C 1.53072 * 108.42652 * 67.52866 * 6 5 4 8 8 H 1.08997 * 109.32920 * 71.18755 * 7 6 5 9 9 N 1.46498 * 109.40146 * 190.97270 * 7 6 5 10 10 C 1.34772 * 120.00047 * 205.42649 * 9 7 6 11 11 O 1.21593 * 120.00100 * 0.02562 * 10 9 7 12 12 C 1.47535 * 120.00224 * 180.02562 * 10 9 7 13 13 C 1.39659 * 120.19645 * 0.02562 * 12 10 9 14 14 C 1.37827 * 119.92159 * 179.97438 * 13 12 10 15 15 C 1.38577 * 120.32416 * 0.02562 * 14 13 12 16 16 C 1.38029 * 120.39786 * 359.97438 * 15 14 13 17 17 C 1.38832 * 120.07448 * 359.74199 * 16 15 14 18 18 O 1.35517 * 120.16548 * 180.27486 * 17 16 15 19 19 C 1.34820 * 116.99779 * 354.40476 * 18 17 16 20 20 H 1.07998 * 119.99741 * 5.06495 * 19 18 17 21 21 C 1.38699 * 119.99796 * 185.06381 * 19 18 17 22 22 N 1.31518 * 119.99841 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99782 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47362 * 89.99911 * 23 21 19 25 25 H 1.48501 * 109.47383 * 209.99753 * 23 21 19 26 26 H 1.48501 * 109.47322 * 330.00079 * 23 21 19 27 27 C 1.33349 * 117.95107 * 89.99838 * 3 2 1 28 28 O 1.21282 * 118.24498 * 357.75431 * 27 3 2 29 29 H 1.09005 * 109.47160 * 300.00376 * 1 2 3 30 30 H 1.08999 * 109.47151 * 60.00232 * 1 2 3 31 31 H 1.08997 * 109.47618 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46728 * 239.99807 * 2 1 3 33 33 H 1.08999 * 109.47151 * 119.99768 * 2 1 3 34 34 H 1.08997 * 109.50957 * 78.90739 * 4 3 2 35 35 H 1.09000 * 108.99138 * 319.38329 * 4 3 2 36 36 H 1.08998 * 109.60128 * 189.26985 * 5 4 3 37 37 H 1.09002 * 109.73377 * 68.87220 * 5 4 3 38 38 H 1.09002 * 109.67120 * 307.79752 * 6 5 4 39 39 H 1.09000 * 109.70905 * 187.28296 * 6 5 4 40 40 H 0.96998 * 120.00176 * 25.42872 * 9 7 6 41 41 H 1.08003 * 120.03935 * 359.95236 * 13 12 10 42 42 H 1.08006 * 119.84116 * 179.97438 * 14 13 12 43 43 H 1.08001 * 119.80335 * 179.97438 * 15 14 13 44 44 H 1.07997 * 119.96334 * 180.02562 * 16 15 14 45 45 H 0.97004 * 119.99627 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2408 2.0274 -1.2876 5 6 3.1698 3.2314 -1.1269 6 6 2.6326 4.1189 0.0023 7 6 2.7766 3.3603 1.3240 8 1 3.8307 3.3059 1.5958 9 7 2.0392 4.0676 2.3739 10 6 2.4021 3.9265 3.6641 11 8 3.3419 3.2126 3.9568 12 6 1.6592 4.6384 4.7215 13 6 0.5788 5.4590 4.3901 14 6 -0.1115 6.1209 5.3825 15 6 0.2611 5.9770 6.7094 16 6 1.3268 5.1694 7.0520 17 6 2.0301 4.4903 6.0662 18 8 3.0731 3.6925 6.4010 19 6 3.4515 3.6905 7.6950 20 1 2.8791 4.2425 8.4258 21 6 4.5758 2.9795 8.0877 22 7 5.2724 2.3068 7.1977 23 14 5.1004 2.9772 9.8804 24 1 4.4446 1.8475 10.5867 25 1 6.5751 2.8243 9.9645 26 1 4.6985 4.2581 10.5154 27 6 2.2266 1.9705 1.1779 28 8 1.9624 1.3490 2.1853 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.2872 2.3604 -1.6974 35 1 2.6956 1.3100 -1.9706 36 1 3.1968 3.7992 -2.0569 37 1 4.1746 2.8903 -0.8774 38 1 1.5819 4.3461 -0.1778 39 1 3.2059 5.0449 0.0464 40 1 1.2897 4.6374 2.1404 41 1 0.2849 5.5751 3.3573 42 1 -0.9466 6.7556 5.1247 43 1 -0.2855 6.5000 7.4803 44 1 1.6109 5.0620 8.0883 45 1 6.0585 1.8093 7.4724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928875673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:09:43 Heat of formation + Delta-G solvation = -59.814649 kcal Electronic energy + Delta-G solvation = -29066.717928 eV Core-core repulsion = 25050.407826 eV Total energy + Delta-G solvation = -4016.310102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.68902 -39.34543 -37.86784 -36.42716 -36.26370 -35.18271 -32.89681 -32.26638 -30.68446 -29.97060 -28.86942 -28.49697 -25.35253 -24.71733 -23.68940 -22.58066 -22.05920 -21.29081 -19.84545 -18.72567 -17.97798 -17.48666 -16.77085 -16.60149 -16.10237 -15.91058 -15.10907 -14.60103 -14.30612 -14.20512 -14.18033 -13.99227 -13.83540 -13.74535 -13.58874 -13.49669 -12.92448 -12.71017 -12.54681 -12.42710 -12.12824 -11.87553 -11.65536 -11.60303 -11.44765 -11.26506 -11.14636 -11.03460 -10.96214 -10.84660 -10.71585 -10.40976 -9.74712 -9.49095 -8.81455 -8.76056 -8.69355 -8.46063 -8.20522 -7.23650 -6.37052 -3.97102 1.79422 2.38676 2.77766 2.97420 3.16161 3.17313 3.21908 3.72726 3.87282 3.99329 4.49092 4.51215 4.57659 4.67266 4.76737 5.03426 5.10591 5.15120 5.16738 5.23547 5.24280 5.30852 5.38603 5.47244 5.55132 5.57877 5.62560 5.67585 5.76652 5.80652 5.94083 5.97507 6.12511 6.15864 6.18290 6.48985 6.62684 6.74772 6.87723 6.97795 7.12214 7.30197 7.35313 7.52640 7.76179 7.98354 8.15052 8.41503 9.02038 9.21231 9.75601 10.76636 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012696 B = 0.003587 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.875479 B = 7803.048316 C = 8904.289707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 N -0.611 5.611 4 C 0.116 3.884 5 C -0.133 4.133 6 C -0.129 4.129 7 C 0.143 3.857 8 H 0.117 0.883 9 N -0.729 5.729 10 C 0.560 3.440 11 O -0.484 6.484 12 C -0.222 4.222 13 C -0.039 4.039 14 C -0.232 4.232 15 C -0.052 4.052 16 C -0.238 4.238 17 C 0.190 3.810 18 O -0.122 6.122 19 C -0.404 4.404 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.831 5.831 23 Si 0.940 3.060 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.266 1.266 27 C 0.496 3.504 28 O -0.511 6.511 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.393 0.607 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 3.353 -18.200 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.348 5.348 4 C -0.008 4.008 5 C -0.171 4.171 6 C -0.167 4.167 7 C 0.034 3.966 8 H 0.135 0.865 9 N -0.386 5.386 10 C 0.349 3.651 11 O -0.356 6.356 12 C -0.227 4.227 13 C -0.058 4.058 14 C -0.251 4.251 15 C -0.070 4.070 16 C -0.257 4.257 17 C 0.130 3.870 18 O -0.020 6.020 19 C -0.480 4.480 20 H 0.111 0.889 21 C -0.163 4.163 22 N -0.462 5.462 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C 0.281 3.719 28 O -0.384 6.384 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.228 0.772 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.761 2.159 -17.502 18.886 hybrid contribution -0.327 0.278 0.669 0.794 sum -7.088 2.437 -16.833 18.427 Atomic orbital electron populations 1.22076 0.96038 1.02010 1.02132 1.21443 0.94489 0.82880 1.03062 1.47503 1.66971 1.14528 1.05785 1.21375 0.99266 0.95096 0.85018 1.21845 0.99838 0.95973 0.99460 1.21944 1.02660 0.99317 0.92755 1.20594 0.99056 0.88417 0.88505 0.86549 1.45690 1.36424 1.50632 1.05828 1.18176 0.84168 0.81355 0.81391 1.90951 1.27371 1.36178 1.81075 1.18818 1.03588 1.09327 0.90998 1.20732 0.93033 0.94035 0.97972 1.20438 1.04182 1.07403 0.93061 1.20881 0.94819 0.95547 0.95783 1.21148 1.00266 1.04315 1.00005 1.19269 0.88193 0.88056 0.91470 1.84188 1.38788 1.50630 1.28426 1.21494 1.11348 1.33249 0.81886 0.88910 1.25383 0.95150 0.95683 1.00122 1.70146 1.15684 1.26698 1.33705 0.85736 0.78265 0.79095 0.80438 1.19778 1.20166 1.19076 1.20871 0.78590 0.89610 0.82823 1.90808 1.48979 1.63224 1.35395 0.92072 0.92956 0.91838 0.90974 0.89604 0.91953 0.90854 0.89352 0.90449 0.90743 0.89722 0.77151 0.87216 0.87345 0.87235 0.85105 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.23 37.16 0.38 -1.35 16 2 C 0.10 1.20 5.92 -4.04 -0.02 1.18 16 3 N -0.61 -7.51 2.81 -174.95 -0.49 -8.00 16 4 C 0.12 0.89 6.40 -4.47 -0.03 0.86 16 5 C -0.13 -0.94 6.02 -26.60 -0.16 -1.10 16 6 C -0.13 -1.18 5.51 -26.52 -0.15 -1.32 16 7 C 0.14 2.17 2.70 -69.30 -0.19 1.99 16 8 H 0.12 2.03 7.57 -51.93 -0.39 1.63 16 9 N -0.73 -12.52 4.91 -56.19 -0.28 -12.80 16 10 C 0.56 13.11 7.20 -12.47 -0.09 13.02 16 11 O -0.48 -14.05 14.40 -19.00 -0.27 -14.33 16 12 C -0.22 -5.11 5.89 -104.81 -0.62 -5.73 16 13 C -0.04 -0.70 9.53 -39.20 -0.37 -1.07 16 14 C -0.23 -3.96 10.02 -39.61 -0.40 -4.36 16 15 C -0.05 -0.95 10.03 -39.53 -0.40 -1.35 16 16 C -0.24 -5.34 9.16 -39.44 -0.36 -5.70 16 17 C 0.19 4.95 6.66 -38.60 -0.26 4.69 16 18 O -0.12 -3.77 7.84 -21.06 -0.17 -3.94 16 19 C -0.40 -11.85 9.49 30.90 0.29 -11.56 16 20 H 0.09 2.47 5.21 -52.49 -0.27 2.19 16 21 C 0.04 1.28 5.49 -17.52 -0.10 1.18 16 22 N -0.83 -25.94 13.67 55.48 0.76 -25.18 16 23 Si 0.94 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 C 0.50 8.34 7.19 -11.87 -0.09 8.25 16 28 O -0.51 -11.56 15.01 4.65 0.07 -11.49 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.61 7.86 -51.93 -0.41 0.20 16 33 H 0.09 1.24 7.20 -51.93 -0.37 0.87 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.44 7.91 -51.93 -0.41 0.03 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 38 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 5.35 6.62 -40.82 -0.27 5.08 16 41 H 0.11 1.52 6.40 -52.48 -0.34 1.18 16 42 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 45 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -39.84 370.83 -8.48 -48.32 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.12 Total: 8.05 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.55 Total: -2.37 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.01 Total: -45.99 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.37 Total: -29.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.84 -8.48 -48.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928875673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.492 kcal (2) G-P(sol) polarization free energy of solvation -39.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds