Wall clock time and date at job start Sat Apr 11 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34776 * 120.00124 * 2 1 4 4 O 1.21280 * 119.99834 * 185.36540 * 3 2 1 5 5 C 1.50698 * 120.00001 * 5.35944 * 3 2 1 6 6 H 1.09004 * 109.73947 * 314.15598 * 5 3 2 7 7 C 1.53463 * 109.71264 * 74.76663 * 5 3 2 8 8 O 1.43176 * 108.25348 * 179.42572 * 7 5 3 9 9 C 1.36108 * 116.71220 * 313.83649 * 8 7 5 10 10 C 1.38700 * 119.39720 * 197.04428 * 9 8 7 11 11 C 1.38188 * 120.07252 * 180.19784 * 10 9 8 12 12 C 1.38255 * 120.11085 * 0.30278 * 11 10 9 13 13 C 1.38197 * 120.10880 * 359.40200 * 12 11 10 14 14 C 1.38699 * 120.07207 * 0.53126 * 13 12 11 15 15 O 1.36105 * 119.40401 * 179.91897 * 14 13 12 16 16 C 1.46500 * 120.00036 * 179.97438 * 2 1 3 17 17 H 1.09001 * 110.64616 * 179.30123 * 16 2 1 18 18 C 1.55160 * 110.72173 * 302.44615 * 16 2 1 19 19 C 1.55127 * 101.48381 * 153.73158 * 18 16 2 20 20 N 1.47424 * 104.94532 * 323.22032 * 19 18 16 21 21 C 1.36931 * 125.64988 * 203.97124 * 20 19 18 22 22 H 1.08006 * 119.99903 * 180.02562 * 21 20 19 23 23 C 1.38815 * 120.00277 * 0.03910 * 21 20 19 24 24 N 1.31622 * 119.99439 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00450 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46787 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47045 * 119.99996 * 25 23 21 28 28 H 1.48493 * 109.47229 * 240.00096 * 25 23 21 29 29 C 1.47024 * 108.70398 * 24.00365 * 20 19 18 30 30 H 1.09000 * 109.47286 * 93.77244 * 1 2 3 31 31 H 1.09000 * 109.47250 * 213.77704 * 1 2 3 32 32 H 1.09005 * 109.47154 * 333.77313 * 1 2 3 33 33 H 1.08998 * 109.70503 * 59.73173 * 7 5 3 34 34 H 1.09000 * 109.74220 * 299.13598 * 7 5 3 35 35 H 1.08003 * 119.96443 * 0.17793 * 10 9 8 36 36 H 1.08001 * 119.95119 * 180.02562 * 11 10 9 37 37 H 1.07997 * 119.94332 * 179.64739 * 12 11 10 38 38 H 1.08007 * 119.96783 * 180.25820 * 13 12 11 39 39 H 1.08995 * 111.00276 * 271.93518 * 18 16 2 40 40 H 1.08998 * 111.00205 * 35.78795 * 18 16 2 41 41 H 1.08999 * 110.41723 * 204.29288 * 19 18 16 42 42 H 1.08999 * 110.29904 * 82.09294 * 19 18 16 43 43 H 0.97000 * 119.99463 * 180.02562 * 24 23 21 44 44 H 1.08995 * 109.88349 * 239.52518 * 29 20 19 45 45 H 1.09000 * 110.01267 * 118.42918 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3477 1.1694 -0.0982 5 6 1.3903 2.4694 0.1219 6 1 0.5303 2.4638 -0.5478 7 6 0.9180 2.6614 1.5693 8 8 0.2241 3.9111 1.6526 9 6 0.8195 4.9821 1.0601 10 6 0.4051 6.2627 1.3947 11 6 0.9971 7.3600 0.7987 12 6 1.9995 7.1843 -0.1371 13 6 2.4214 5.9112 -0.4704 14 6 1.8324 4.8057 0.1250 15 8 2.2573 3.5580 -0.2146 16 6 2.1975 -1.2687 0.0006 17 1 3.2729 -1.0916 -0.0120 18 6 1.7977 -2.1329 1.2256 19 6 2.0880 -3.5640 0.7020 20 7 1.7051 -3.5331 -0.7212 21 6 1.3452 -4.6184 -1.4746 22 1 1.0809 -4.4906 -2.5140 23 6 1.3196 -5.8829 -0.9025 24 7 1.6409 -6.0384 0.3644 25 14 0.8294 -7.3636 -1.9304 26 1 0.5176 -6.9241 -3.3141 27 1 1.9499 -8.3375 -1.9614 28 1 -0.3685 -8.0062 -1.3328 29 6 1.7743 -2.1440 -1.1980 30 1 -0.3634 -0.0676 -1.0254 31 1 -0.3634 -0.8542 0.5713 32 1 -0.3634 0.9219 0.4542 33 1 1.7785 2.6734 2.2382 34 1 0.2469 1.8491 1.8484 35 1 -0.3814 6.4026 2.1215 36 1 0.6731 8.3563 1.0609 37 1 2.4564 8.0436 -0.6054 38 1 3.2076 5.7768 -1.1987 39 1 2.4185 -1.8966 2.0897 40 1 0.7404 -2.0114 1.4611 41 1 1.4860 -4.2955 1.2410 42 1 3.1480 -3.7964 0.8048 43 1 1.6235 -6.9221 0.7642 44 1 0.7965 -1.8276 -1.5612 45 1 2.5112 -2.0601 -1.9968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033636799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:18 Heat of formation + Delta-G solvation = -29.853534 kcal Electronic energy + Delta-G solvation = -28667.716121 eV Core-core repulsion = 24652.705230 eV Total energy + Delta-G solvation = -4015.010891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77576 -39.97409 -37.99353 -37.69227 -37.11160 -35.03886 -32.55010 -31.48283 -30.95905 -29.41281 -28.84894 -27.58406 -26.84066 -25.54160 -24.42983 -23.14325 -21.94667 -20.55438 -20.30242 -19.18853 -18.93570 -18.17819 -17.41144 -16.99582 -16.73597 -16.08346 -15.87890 -15.32561 -15.04120 -14.82488 -14.63118 -14.49961 -14.29208 -14.13962 -14.06040 -13.70546 -13.18789 -13.06437 -12.58819 -12.39114 -12.32170 -12.15491 -11.93510 -11.63548 -11.63095 -11.46852 -11.11744 -10.96330 -10.87681 -10.86337 -10.50898 -10.14298 -9.90345 -9.78675 -9.63125 -8.97002 -8.72842 -8.55926 -8.38612 -6.91928 -5.72232 -3.14698 0.98037 0.99215 2.18143 2.39753 2.73920 3.25470 3.35979 3.41680 3.42538 3.44228 3.83014 4.11876 4.27571 4.38448 4.44166 4.65022 4.70349 4.89733 4.93926 5.04754 5.08149 5.16523 5.25108 5.32655 5.44270 5.46030 5.50201 5.59314 5.63870 5.79616 5.83150 5.86506 6.08256 6.14954 6.24439 6.30216 6.42452 6.46189 6.54173 6.60507 6.83093 7.07882 7.30553 7.42678 7.55841 7.76657 8.00247 8.27643 9.14564 9.74929 10.38356 11.31703 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.036135 B = 0.002290 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.676775 B =12225.958519 C =12391.476906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.594 5.594 3 C 0.523 3.477 4 O -0.512 6.512 5 C 0.036 3.964 6 H 0.109 0.891 7 C 0.033 3.967 8 O -0.300 6.300 9 C 0.045 3.955 10 C -0.112 4.112 11 C -0.119 4.119 12 C -0.115 4.115 13 C -0.112 4.112 14 C 0.055 3.945 15 O -0.279 6.279 16 C 0.127 3.873 17 H 0.105 0.895 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.602 5.602 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.011 4.011 24 N -0.922 5.922 25 Si 0.916 3.084 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.130 3.870 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.016 0.984 43 H 0.252 0.748 44 H 0.029 0.971 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 24.589 3.312 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.328 5.328 3 C 0.308 3.692 4 O -0.387 6.387 5 C -0.025 4.025 6 H 0.127 0.873 7 C -0.043 4.043 8 O -0.215 6.215 9 C 0.000 4.000 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.133 4.133 13 C -0.130 4.130 14 C 0.009 3.991 15 O -0.193 6.193 16 C 0.025 3.975 17 H 0.123 0.877 18 C -0.193 4.193 19 C 0.028 3.972 20 N -0.328 5.328 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.570 5.570 25 Si 0.746 3.254 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.003 3.997 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.988 24.280 3.266 24.821 hybrid contribution -0.281 -0.968 -0.590 1.168 sum -4.269 23.312 2.676 23.850 Atomic orbital electron populations 1.22028 0.79435 1.03333 1.03152 1.47773 1.07155 1.05456 1.72368 1.19539 0.87766 0.83892 0.78024 1.90749 1.13581 1.86493 1.47845 1.22966 0.93946 0.87034 0.98511 0.87336 1.23633 0.99763 0.85973 0.94933 1.86341 1.46166 1.15726 1.73237 1.18975 0.97002 0.88579 0.95422 1.20447 1.02066 0.88786 1.01788 1.20928 0.97041 0.98294 0.97440 1.20938 0.97725 0.96176 0.98463 1.20493 1.01734 0.89901 1.00905 1.19040 0.97760 0.85579 0.96672 1.86413 1.44099 1.11486 1.77265 1.22355 0.97103 0.80604 0.97486 0.87666 1.23458 1.00810 0.98947 0.96052 1.21987 0.98723 0.91379 0.85113 1.44432 1.79632 1.00885 1.07900 1.19112 1.37899 0.84755 0.93284 0.90364 1.24803 1.01822 0.97507 0.96493 1.69783 1.54791 1.21556 1.10919 0.85975 0.77749 0.82610 0.79022 1.20509 1.21696 1.21694 1.21495 0.98077 0.86262 0.93865 0.91620 0.89347 0.91390 0.89520 0.84993 0.84723 0.85028 0.84969 0.84571 0.91855 0.91524 0.87139 0.96627 0.93672 0.95330 0.95548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.68 8.87 59.84 0.53 1.21 16 2 N -0.59 -8.52 2.88 -171.83 -0.50 -9.02 16 3 C 0.52 7.92 6.99 -10.99 -0.08 7.84 16 4 O -0.51 -9.88 15.95 -13.81 -0.22 -10.10 16 5 C 0.04 0.44 2.55 -27.64 -0.07 0.37 16 6 H 0.11 1.12 7.27 -51.93 -0.38 0.74 16 7 C 0.03 0.34 6.23 37.40 0.23 0.57 16 8 O -0.30 -3.34 10.42 -32.87 -0.34 -3.68 16 9 C 0.05 0.51 6.49 -39.14 -0.25 0.26 16 10 C -0.11 -1.02 9.96 -39.43 -0.39 -1.41 16 11 C -0.12 -0.89 10.04 -39.59 -0.40 -1.29 16 12 C -0.11 -0.91 10.04 -39.59 -0.40 -1.30 16 13 C -0.11 -1.14 9.96 -39.43 -0.39 -1.54 16 14 C 0.05 0.68 6.49 -39.14 -0.25 0.42 16 15 O -0.28 -3.99 9.65 -46.86 -0.45 -4.44 16 16 C 0.13 2.25 3.35 -66.09 -0.22 2.03 16 17 H 0.11 2.04 7.00 -51.93 -0.36 1.68 16 18 C -0.15 -2.75 6.65 -24.46 -0.16 -2.91 16 19 C 0.15 3.59 5.89 -2.41 -0.01 3.57 16 20 N -0.60 -15.00 3.40 -169.93 -0.58 -15.58 16 21 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 22 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 24 N -0.92 -26.23 10.09 55.49 0.56 -25.67 16 25 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 C 0.13 2.68 6.88 -3.06 -0.02 2.66 16 30 H 0.07 0.69 7.72 -51.93 -0.40 0.29 16 31 H 0.09 1.00 6.22 -51.93 -0.32 0.68 16 32 H 0.07 0.53 4.56 -51.93 -0.24 0.29 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.13 1.03 6.31 -51.93 -0.33 0.70 16 35 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 36 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.10 6.22 -51.93 -0.32 0.78 16 41 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.03 0.56 6.73 -51.93 -0.35 0.21 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -33.02 358.25 -9.23 -42.25 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.94 Total: 0.31 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.14 Total: 3.88 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.51 Total: -50.27 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -1.01 Total: -18.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.02 -9.23 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033636799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.393 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds