Wall clock time and date at job start Sat Apr 11 2020 03:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34771 * 119.99931 * 2 1 4 4 O 1.21281 * 119.99785 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00465 * 359.97438 * 3 2 1 6 6 C 1.52996 * 109.47123 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.70323 * 54.42868 * 6 5 3 8 8 C 1.53475 * 109.70060 * 175.00301 * 6 5 3 9 9 O 1.43184 * 108.23016 * 179.41459 * 8 6 5 10 10 C 1.36104 * 116.69039 * 313.71020 * 9 8 6 11 11 C 1.38703 * 119.39173 * 197.56515 * 10 9 8 12 12 C 1.38196 * 120.06575 * 180.43231 * 11 10 9 13 13 C 1.38255 * 120.11173 * 359.48131 * 12 11 10 14 14 C 1.38199 * 120.11428 * 0.22157 * 13 12 11 15 15 C 1.38708 * 120.06378 * 359.97438 * 14 13 12 16 16 O 1.36110 * 119.40053 * 180.35600 * 15 14 13 17 17 C 1.46503 * 119.99907 * 179.97438 * 2 1 3 18 18 C 1.53943 * 113.73875 * 38.73928 * 17 2 1 19 19 N 1.47815 * 86.03570 * 222.08503 * 18 17 2 20 20 C 1.36940 * 134.45487 * 204.64791 * 19 18 17 21 21 H 1.08004 * 119.99814 * 179.86718 * 20 19 18 22 22 C 1.38813 * 120.00371 * 359.86532 * 20 19 18 23 23 N 1.31620 * 119.99649 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00192 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46653 * 60.00292 * 24 22 20 26 26 H 1.48495 * 109.46837 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47026 * 300.00110 * 24 22 20 28 28 C 1.47574 * 91.05182 * 24.55240 * 19 18 17 29 29 H 1.08997 * 109.47074 * 89.99775 * 1 2 3 30 30 H 1.08997 * 109.47125 * 210.00349 * 1 2 3 31 31 H 1.09003 * 109.46836 * 330.00194 * 1 2 3 32 32 H 1.09001 * 109.46309 * 59.99949 * 5 3 2 33 33 H 1.08999 * 109.47156 * 300.00675 * 5 3 2 34 34 H 1.08996 * 109.71673 * 59.73179 * 8 6 5 35 35 H 1.09003 * 109.74633 * 299.11643 * 8 6 5 36 36 H 1.07998 * 119.96916 * 0.14778 * 11 10 9 37 37 H 1.08002 * 119.94846 * 179.76700 * 12 11 10 38 38 H 1.07999 * 119.94907 * 180.19837 * 13 12 11 39 39 H 1.08000 * 119.97044 * 179.97438 * 14 13 12 40 40 H 1.08996 * 112.94537 * 170.33185 * 17 2 1 41 41 H 1.08999 * 113.77318 * 336.35162 * 18 17 2 42 42 H 1.09004 * 113.76970 * 107.74899 * 18 17 2 43 43 H 0.96998 * 120.00178 * 179.97438 * 23 22 20 44 44 H 1.08999 * 113.77178 * 221.15477 * 28 19 18 45 45 H 1.08996 * 113.87393 * 89.76182 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 6 2.3798 3.6352 -0.0011 7 1 3.0723 3.5261 -0.8358 8 6 1.6220 4.9638 -0.1276 9 8 2.5791 6.0286 -0.1110 10 6 3.5435 5.9689 0.8475 11 6 4.2634 7.1123 1.1610 12 6 5.2519 7.0654 2.1256 13 6 5.5187 5.8817 2.7882 14 6 4.8010 4.7403 2.4850 15 6 3.8103 4.7796 1.5150 16 8 3.1067 3.6492 1.2323 17 6 2.1976 -1.2688 0.0006 18 6 1.5555 -2.3554 -0.8808 19 7 1.8610 -3.2878 0.2248 20 6 2.0638 -4.6394 0.3112 21 1 2.2808 -5.0928 1.2671 22 6 1.9905 -5.4266 -0.8298 23 7 1.7255 -4.8740 -1.9946 24 14 2.2678 -7.2702 -0.7120 25 1 1.2582 -7.8652 0.1999 26 1 2.1353 -7.8777 -2.0605 27 1 3.6299 -7.5329 -0.1818 28 6 1.8621 -2.1776 1.1970 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7585 2.5302 0.8892 33 1 0.7591 2.5299 -0.8907 34 1 0.9333 5.0755 0.7099 35 1 1.0667 4.9832 -1.0653 36 1 4.0544 8.0391 0.6475 37 1 5.8138 7.9559 2.3655 38 1 6.2897 5.8487 3.5439 39 1 5.0117 3.8167 3.0038 40 1 3.2669 -1.1421 -0.1681 41 1 0.4887 -2.2098 -1.0506 42 1 2.1091 -2.5619 -1.7968 43 1 1.6746 -5.4240 -2.7920 44 1 2.6599 -2.2423 1.9369 45 1 0.8863 -1.9783 1.6400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042801421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:05:08 Heat of formation + Delta-G solvation = -12.573892 kcal Electronic energy + Delta-G solvation = -28232.001345 eV Core-core repulsion = 24217.739755 eV Total energy + Delta-G solvation = -4014.261589 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49359 -39.84683 -38.08114 -37.61215 -37.20375 -34.49283 -33.10874 -31.95430 -30.84008 -29.44781 -28.04330 -27.19396 -26.58104 -24.84301 -24.32449 -23.06454 -22.71359 -20.90679 -19.93323 -18.93935 -18.44805 -17.77597 -17.10210 -16.97815 -16.68887 -15.92775 -15.54482 -15.37527 -15.14129 -14.91253 -14.69548 -14.51114 -14.06642 -13.95804 -13.86191 -13.52963 -13.22030 -12.95369 -12.50544 -12.32308 -12.16895 -12.07900 -11.95326 -11.78430 -11.53033 -11.39946 -11.32135 -11.10128 -10.90306 -10.73253 -10.59780 -10.27868 -10.10897 -9.58899 -9.50098 -8.83204 -8.82695 -8.23002 -8.16962 -6.94472 -5.81522 -3.14439 1.10978 1.14008 2.76592 2.84898 2.99840 3.18569 3.38487 3.42285 3.43452 3.55113 3.94490 4.36866 4.38058 4.44670 4.55820 4.71999 4.80151 4.90000 4.95919 5.06386 5.10980 5.17264 5.23185 5.28508 5.31040 5.42535 5.46962 5.47734 5.67946 5.73770 5.82102 5.95536 6.01665 6.06571 6.14054 6.27690 6.41300 6.44403 6.55505 6.74544 6.75620 7.15722 7.27574 7.30879 7.48251 7.72485 7.92426 8.41695 8.99546 9.65660 10.52458 11.35718 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.002240 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.185514 B =12496.831540 C =13119.196477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.601 5.601 3 C 0.511 3.489 4 O -0.533 6.533 5 C -0.134 4.134 6 C 0.069 3.931 7 H 0.094 0.906 8 C 0.026 3.974 9 O -0.307 6.307 10 C 0.043 3.957 11 C -0.115 4.115 12 C -0.123 4.123 13 C -0.116 4.116 14 C -0.114 4.114 15 C 0.062 3.938 16 O -0.288 6.288 17 C 0.091 3.909 18 C 0.157 3.843 19 N -0.606 5.606 20 C -0.224 4.224 21 H 0.081 0.919 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.108 3.892 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.115 0.885 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.047 0.953 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 25.046 5.522 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.334 5.334 3 C 0.298 3.702 4 O -0.409 6.409 5 C -0.174 4.174 6 C 0.012 3.988 7 H 0.112 0.888 8 C -0.050 4.050 9 O -0.221 6.221 10 C -0.002 4.002 11 C -0.134 4.134 12 C -0.141 4.141 13 C -0.134 4.134 14 C -0.133 4.133 15 C 0.017 3.983 16 O -0.203 6.203 17 C -0.012 4.012 18 C 0.031 3.969 19 N -0.333 5.333 20 C -0.351 4.351 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.745 3.255 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.133 0.867 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.142 24.643 5.345 25.242 hybrid contribution -0.333 -1.230 -0.071 1.277 sum -1.475 23.413 5.274 24.045 Atomic orbital electron populations 1.21805 0.79970 1.03017 1.01968 1.48032 1.06846 1.06227 1.72255 1.20240 0.88088 0.85001 0.76846 1.90725 1.13710 1.87111 1.49377 1.21738 0.98157 0.91858 1.05680 1.22854 0.94161 0.94408 0.87403 0.88783 1.23697 0.90318 0.85810 1.05148 1.86298 1.38804 1.46769 1.50268 1.18946 0.93617 0.93597 0.94047 1.20414 0.97505 0.96162 0.99299 1.20884 0.98101 0.98443 0.96695 1.20930 0.99906 0.92072 1.00472 1.20532 0.94227 0.99943 0.98569 1.19011 0.95521 0.84933 0.98876 1.86430 1.61169 1.34208 1.38451 1.24032 0.98049 0.79747 0.99399 1.22659 0.96817 0.83515 0.93878 1.45700 1.81978 1.02200 1.03431 1.18952 1.41601 0.80219 0.94332 0.90091 1.24807 1.01890 0.98317 0.95345 1.69801 1.54524 1.34456 0.98040 0.86157 0.78137 0.84544 0.76672 1.21133 1.21506 1.20960 1.22961 0.98012 0.87322 0.93576 0.92350 0.90248 0.91717 0.87616 0.86552 0.90390 0.85857 0.85027 0.85247 0.85165 0.84693 0.86687 0.95065 0.90552 0.93485 0.93523 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 8.84 59.85 0.53 1.41 16 2 N -0.60 -9.36 3.09 -175.74 -0.54 -9.91 16 3 C 0.51 7.83 7.57 -10.99 -0.08 7.75 16 4 O -0.53 -10.45 14.95 -7.28 -0.11 -10.56 16 5 C -0.13 -1.33 3.98 -27.88 -0.11 -1.44 16 6 C 0.07 0.78 2.55 -26.49 -0.07 0.71 16 7 H 0.09 1.21 7.94 -51.93 -0.41 0.80 16 8 C 0.03 0.22 6.56 37.40 0.25 0.47 16 9 O -0.31 -3.48 10.42 -32.86 -0.34 -3.82 16 10 C 0.04 0.52 6.49 -39.14 -0.25 0.26 16 11 C -0.12 -1.15 9.96 -39.43 -0.39 -1.55 16 12 C -0.12 -1.07 10.04 -39.59 -0.40 -1.47 16 13 C -0.12 -1.08 10.04 -39.59 -0.40 -1.47 16 14 C -0.11 -1.34 9.96 -39.42 -0.39 -1.73 16 15 C 0.06 0.82 6.49 -39.14 -0.25 0.56 16 16 O -0.29 -4.09 9.40 -43.76 -0.41 -4.50 16 17 C 0.09 1.81 4.40 -70.14 -0.31 1.50 16 18 C 0.16 3.66 6.97 -2.84 -0.02 3.64 16 19 N -0.61 -15.62 3.70 -177.89 -0.66 -16.28 16 20 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 21 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -27.19 11.39 55.49 0.63 -26.55 16 24 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.11 2.27 8.45 -2.97 -0.03 2.24 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.03 6.35 -51.93 -0.33 0.70 16 31 H 0.06 0.52 6.44 -51.93 -0.33 0.19 16 32 H 0.11 0.85 7.40 -51.93 -0.38 0.47 16 33 H 0.12 0.76 8.11 -51.93 -0.42 0.34 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.12 2.53 7.22 -51.93 -0.37 2.16 16 41 H 0.03 0.71 6.83 -51.93 -0.35 0.35 16 42 H 0.08 2.00 7.17 -51.93 -0.37 1.63 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.04 0.67 6.84 -51.93 -0.36 0.32 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -35.42 367.57 -9.37 -44.80 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.27 Total: 0.06 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.19 Total: 4.15 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.57 Total: -52.74 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.86 Total: -18.89 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.42 -9.37 -44.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042801421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.222 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds