Wall clock time and date at job start Sat Apr 11 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99994 * 2 1 4 4 C 1.52994 * 109.47173 * 269.99545 * 3 2 1 5 5 C 1.53780 * 113.61568 * 274.13702 * 4 3 2 6 6 C 1.53952 * 87.01958 * 220.04539 * 5 4 3 7 7 C 1.53776 * 113.61729 * 176.52782 * 4 3 2 8 8 C 1.34775 * 120.00018 * 179.97438 * 2 1 3 9 9 O 1.21366 * 120.00263 * 180.90832 * 8 2 1 10 10 C 1.49325 * 120.00044 * 0.91718 * 8 2 1 11 11 O 1.21384 * 119.99891 * 354.57240 * 10 8 2 12 12 N 1.34775 * 119.99688 * 174.29649 * 10 8 2 13 13 C 1.39749 * 119.99467 * 173.66080 * 12 10 8 14 14 C 1.38998 * 120.00240 * 319.42271 * 13 12 10 15 15 C 1.37973 * 119.98537 * 179.79187 * 14 13 12 16 16 C 1.38931 * 120.00976 * 0.49050 * 15 14 13 17 17 O 1.35757 * 119.99490 * 179.71838 * 16 15 14 18 18 C 1.34801 * 117.00278 * 178.77896 * 17 16 15 19 19 H 1.08006 * 119.99925 * 4.70450 * 18 17 16 20 20 C 1.38650 * 120.00161 * 184.69012 * 18 17 16 21 21 N 1.31555 * 119.99981 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99898 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47086 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47161 * 120.00656 * 22 20 18 25 25 H 1.48502 * 109.46877 * 240.00424 * 22 20 18 26 26 C 1.38940 * 120.01467 * 359.74654 * 16 15 14 27 27 C 1.37969 * 120.00579 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47361 * 263.46595 * 1 2 3 29 29 H 1.09001 * 109.47035 * 23.47025 * 1 2 3 30 30 H 1.09006 * 109.46621 * 143.46328 * 1 2 3 31 31 H 1.09002 * 109.46890 * 29.99466 * 3 2 1 32 32 H 1.08997 * 109.46839 * 149.99619 * 3 2 1 33 33 H 1.09001 * 112.85008 * 45.33152 * 4 3 2 34 34 H 1.09002 * 113.61303 * 334.56793 * 5 4 3 35 35 H 1.09002 * 113.61433 * 105.47064 * 5 4 3 36 36 H 1.08997 * 113.53953 * 270.81395 * 6 5 4 37 37 H 1.09007 * 113.74170 * 139.93892 * 6 5 4 38 38 H 1.09000 * 113.62074 * 254.53451 * 7 4 3 39 39 H 1.09001 * 113.61294 * 25.34848 * 7 4 3 40 40 H 0.97001 * 120.00430 * 353.65636 * 12 10 8 41 41 H 1.07995 * 120.00679 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.99458 * 180.23767 * 15 14 13 43 43 H 0.97008 * 119.99829 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.99790 * 180.02562 * 26 16 15 45 45 H 1.07998 * 120.00327 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 6 3.7245 1.1025 -2.0570 6 6 3.9737 2.4782 -2.7016 7 6 3.1444 3.0792 -1.5545 8 6 2.1389 -1.1672 0.0005 9 8 3.3524 -1.1673 0.0172 10 6 1.3924 -2.4603 -0.0196 11 8 0.1814 -2.4633 0.0630 12 7 2.0630 -3.6237 -0.1351 13 6 1.3804 -4.8378 -0.0211 14 6 0.3889 -4.9900 0.9411 15 6 -0.2878 -6.1875 1.0505 16 6 0.0288 -7.2442 0.2059 17 8 -0.6333 -8.4241 0.3176 18 6 -0.2953 -9.4000 -0.5488 19 1 0.5227 -9.2506 -1.2381 20 6 -0.9974 -10.5955 -0.5548 21 7 -1.9939 -10.7773 0.2846 22 14 -0.5285 -11.9480 -1.7549 23 1 0.6178 -11.4980 -2.5847 24 1 -0.1441 -13.1679 -1.0004 25 1 -1.6863 -12.2536 -2.6333 26 6 1.0232 -7.0938 -0.7527 27 6 1.6971 -5.8952 -0.8658 28 1 -0.3634 -0.1169 1.0210 29 1 -0.3633 0.9427 -0.4093 30 1 -0.3633 -0.8258 -0.6119 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 1.5717 1.6131 -2.0769 34 1 4.4761 0.8237 -1.3184 35 1 3.5251 0.3107 -2.7791 36 1 3.5094 2.5904 -3.6813 37 1 5.0198 2.7847 -2.6912 38 1 2.4774 3.8809 -1.8713 39 1 3.7359 3.3425 -0.6776 40 1 3.0193 -3.6183 -0.2974 41 1 0.1456 -4.1700 1.6004 42 1 -1.0609 -6.3046 1.7955 43 1 -2.4855 -11.6136 0.2801 44 1 1.2688 -7.9153 -1.4094 45 1 2.4703 -5.7785 -1.6106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262729708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:03 Heat of formation + Delta-G solvation = -32.223773 kcal Electronic energy + Delta-G solvation = -27577.746583 eV Core-core repulsion = 23562.632911 eV Total energy + Delta-G solvation = -4015.113672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05024 -39.65251 -38.88110 -38.16911 -36.75648 -35.73283 -33.90805 -32.24194 -30.31416 -29.59724 -28.28870 -26.94623 -25.90347 -25.52016 -24.63677 -22.83973 -22.23602 -20.94680 -19.89130 -19.73300 -18.12933 -17.90275 -17.42065 -16.95590 -16.42988 -16.10322 -15.77716 -15.37365 -15.04684 -14.65849 -14.54940 -14.20592 -13.94230 -13.64119 -13.45863 -13.33165 -13.16287 -12.89725 -12.73444 -12.67859 -12.57514 -12.31022 -11.84000 -11.80854 -11.60253 -11.58374 -11.37251 -11.09401 -11.00075 -10.75141 -10.71714 -10.52889 -10.46376 -9.77713 -9.43629 -9.24715 -8.94622 -8.77056 -8.29029 -7.04680 -6.50298 -4.07929 1.29198 2.12186 2.15863 2.33497 3.08962 3.11307 3.16985 3.22150 3.44179 3.92612 4.21769 4.34029 4.37270 4.39883 4.50267 4.55497 4.97648 5.01020 5.03227 5.04899 5.16593 5.22743 5.37285 5.44414 5.48340 5.50785 5.56586 5.59277 5.67093 5.75842 5.76775 5.91331 6.05868 6.09697 6.12762 6.19157 6.22389 6.67472 6.73533 6.79428 6.91730 7.04962 7.16375 7.29930 7.43059 7.66122 7.72739 7.94135 8.11536 8.95045 9.63912 10.67363 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.002041 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.112906 B =13717.815386 C =14219.005749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.587 5.587 3 C 0.122 3.878 4 C -0.130 4.130 5 C -0.129 4.129 6 C -0.145 4.145 7 C -0.131 4.131 8 C 0.509 3.491 9 O -0.521 6.521 10 C 0.496 3.504 11 O -0.504 6.504 12 N -0.627 5.627 13 C 0.025 3.975 14 C -0.059 4.059 15 C -0.178 4.178 16 C 0.152 3.848 17 O -0.172 6.172 18 C -0.392 4.392 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.221 4.221 27 C -0.078 4.078 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.412 0.588 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.270 0.730 44 H 0.133 0.867 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.034 24.184 -3.071 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.320 5.320 3 C -0.001 4.001 4 C -0.150 4.150 5 C -0.167 4.167 6 C -0.182 4.182 7 C -0.169 4.169 8 C 0.292 3.708 9 O -0.397 6.397 10 C 0.278 3.722 11 O -0.380 6.380 12 N -0.273 5.273 13 C -0.067 4.067 14 C -0.079 4.079 15 C -0.198 4.198 16 C 0.097 3.903 17 O -0.075 6.075 18 C -0.468 4.468 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.241 4.241 27 C -0.098 4.098 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.249 0.751 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.151 0.849 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.457 23.929 -2.760 25.529 hybrid contribution 0.593 -0.598 -0.747 1.125 sum 9.050 23.331 -3.506 25.269 Atomic orbital electron populations 1.22352 0.77481 1.03870 1.03676 1.47692 1.08263 1.05118 1.70925 1.21671 0.97944 0.83843 0.96599 1.22992 0.98454 0.96942 0.96570 1.22965 0.97363 0.96276 1.00082 1.22855 1.00262 0.97115 0.97968 1.22863 0.98976 0.95894 0.99209 1.20157 0.87482 0.85186 0.78002 1.90734 1.13218 1.87253 1.48470 1.20061 0.87747 0.85103 0.79276 1.90725 1.13187 1.86532 1.47529 1.42897 1.12092 1.03555 1.68777 1.17158 1.02314 0.85410 1.01799 1.20473 0.95122 0.96356 0.95948 1.20072 1.04488 0.91875 1.03394 1.19427 0.90893 0.87035 0.92941 1.83983 1.54602 1.17204 1.51716 1.21397 1.17146 0.92606 1.15697 0.88858 1.25317 0.95393 0.97949 0.97887 1.70050 1.18938 1.25777 1.34568 0.85628 0.78679 0.79781 0.79230 1.19048 1.20108 1.20099 1.20996 1.01010 0.98523 1.03575 1.20542 0.99739 0.92660 0.96876 0.91954 0.91664 0.87783 0.89980 0.89387 0.89057 0.89306 0.91922 0.90403 0.91452 0.91425 0.89918 0.75134 0.86431 0.85942 0.91957 0.84895 0.86906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 9.42 59.85 0.56 1.19 16 2 N -0.59 -6.02 2.87 -182.13 -0.52 -6.55 16 3 C 0.12 0.97 5.21 -4.04 -0.02 0.95 16 4 C -0.13 -0.98 3.96 -89.81 -0.36 -1.33 16 5 C -0.13 -1.12 7.07 -25.83 -0.18 -1.30 16 6 C -0.14 -0.98 8.09 -25.83 -0.21 -1.19 16 7 C -0.13 -0.79 7.65 -25.92 -0.20 -0.99 16 8 C 0.51 6.50 7.73 -11.64 -0.09 6.41 16 9 O -0.52 -7.21 15.24 5.48 0.08 -7.13 16 10 C 0.50 7.24 7.43 -11.64 -0.09 7.15 16 11 O -0.50 -8.20 11.46 5.47 0.06 -8.14 16 12 N -0.63 -9.22 5.30 -10.27 -0.05 -9.27 16 13 C 0.03 0.44 6.12 -83.69 -0.51 -0.07 16 14 C -0.06 -1.12 8.65 -39.40 -0.34 -1.46 16 15 C -0.18 -3.79 9.98 -39.42 -0.39 -4.18 16 16 C 0.15 3.60 6.66 -39.06 -0.26 3.34 16 17 O -0.17 -4.82 9.75 0.11 0.00 -4.82 16 18 C -0.39 -10.72 9.48 30.88 0.29 -10.43 16 19 H 0.09 2.34 5.19 -52.48 -0.27 2.07 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.82 13.67 55.48 0.76 -24.06 16 22 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 C -0.22 -4.65 9.16 -39.42 -0.36 -5.02 16 27 C -0.08 -1.40 9.96 -39.40 -0.39 -1.79 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.43 8.02 -51.93 -0.42 0.02 16 30 H 0.10 1.18 5.57 -51.93 -0.29 0.89 16 31 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 32 H 0.09 0.79 7.14 -51.93 -0.37 0.41 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.41 5.20 8.34 -40.82 -0.34 4.86 16 41 H 0.12 2.09 6.99 -52.49 -0.37 1.72 16 42 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 43 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.13 2.77 5.61 -52.49 -0.29 2.47 16 45 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -31.17 375.19 -7.79 -38.95 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.11 Total: 7.98 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.64 Total: -7.74 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.18 Total: -39.87 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.15 Total: -20.09 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.17 -7.79 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262729708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.731 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds