Wall clock time and date at job start Sat Apr 11 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00232 * 2 1 4 4 H 1.48499 * 109.47430 * 264.90505 * 3 2 1 5 5 H 1.48498 * 109.47178 * 24.90835 * 3 2 1 6 6 H 1.48506 * 109.47174 * 144.90361 * 3 2 1 7 7 C 1.37881 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99936 * 185.84645 * 7 2 1 9 9 C 1.50699 * 119.99854 * 5.84484 * 7 2 1 10 10 O 1.42903 * 110.64207 * 59.45175 * 9 7 2 11 11 C 1.55154 * 110.72374 * 296.11648 * 9 7 2 12 12 C 1.55125 * 101.48811 * 205.97018 * 11 9 7 13 13 N 1.47433 * 104.72400 * 37.29173 * 12 11 9 14 14 S 1.65597 * 125.64721 * 155.81702 * 13 12 11 15 15 O 1.42101 * 104.27484 * 153.62343 * 14 13 12 16 16 O 1.42094 * 104.28020 * 25.76373 * 14 13 12 17 17 C 1.81398 * 104.45064 * 269.69095 * 14 13 12 18 18 C 1.52998 * 109.47342 * 180.02562 * 17 14 13 19 19 C 1.53001 * 109.47135 * 180.02562 * 18 17 14 20 20 N 1.46899 * 109.47021 * 180.02562 * 19 18 17 21 21 C 1.47852 * 111.00305 * 49.15299 * 20 19 18 22 22 C 1.54902 * 104.79318 * 146.36561 * 21 20 19 23 23 C 1.55138 * 101.65670 * 322.93033 * 22 21 20 24 24 C 1.47437 * 111.00161 * 169.99944 * 20 19 18 25 25 C 1.47022 * 108.69785 * 335.55774 * 13 12 11 26 26 H 0.97008 * 119.99872 * 359.97438 * 1 2 3 27 27 H 0.96701 * 114.00024 * 297.51401 * 10 9 7 28 28 H 1.09002 * 110.99829 * 324.20748 * 11 9 7 29 29 H 1.08998 * 111.00366 * 88.01931 * 11 9 7 30 30 H 1.08999 * 110.49857 * 278.45051 * 12 11 9 31 31 H 1.09000 * 110.34535 * 156.05350 * 12 11 9 32 32 H 1.09002 * 109.46972 * 59.99992 * 17 14 13 33 33 H 1.09003 * 109.47567 * 300.00616 * 17 14 13 34 34 H 1.08996 * 109.47212 * 60.00417 * 18 17 14 35 35 H 1.08998 * 109.47087 * 300.00205 * 18 17 14 36 36 H 1.08990 * 109.47458 * 60.00072 * 19 18 17 37 37 H 1.08998 * 109.46964 * 299.99868 * 19 18 17 38 38 H 1.09003 * 110.36706 * 27.53352 * 21 20 19 39 39 H 1.08997 * 110.37241 * 265.19854 * 21 20 19 40 40 H 1.09005 * 110.98949 * 204.83890 * 22 21 20 41 41 H 1.08996 * 110.99299 * 81.03184 * 22 21 20 42 42 H 1.09001 * 110.70565 * 154.04034 * 23 22 21 43 43 H 1.08999 * 110.70458 * 277.27164 * 23 22 21 44 44 H 1.09005 * 109.89129 * 117.33412 * 24 20 19 45 45 H 1.09001 * 109.89151 * 356.14452 * 24 20 19 46 46 H 1.09000 * 109.88327 * 120.70897 * 25 13 12 47 47 H 1.09004 * 109.87587 * 241.70902 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6044 1.9843 -1.3945 5 1 1.3970 2.6813 0.5897 6 1 3.4887 1.4736 0.8050 7 6 2.0045 -1.1941 -0.0005 8 1 3.0802 -1.1966 0.0947 9 6 1.2568 -2.4957 -0.1340 10 8 0.5213 -2.5309 -1.3588 11 6 0.3177 -2.7166 1.0812 12 6 0.2092 -4.2637 1.1105 13 7 1.5537 -4.7408 0.7387 14 16 2.1976 -6.2149 1.1321 15 8 3.1475 -6.4674 0.1059 16 8 1.0661 -7.0565 1.3062 17 6 3.0330 -5.9353 2.7178 18 6 3.6765 -7.2398 3.1923 19 6 4.3806 -7.0041 4.5301 20 7 4.9989 -8.2564 4.9853 21 6 5.7941 -8.8781 3.9049 22 6 6.9809 -9.5604 4.6298 23 6 7.2833 -8.5435 5.7617 24 6 5.8823 -8.0197 6.1417 25 6 2.2256 -3.6935 -0.0444 26 1 -0.4850 0.8401 0.0004 27 1 -0.1618 -1.8499 -1.4271 28 1 0.7686 -2.3357 1.9975 29 1 -0.6574 -2.2608 0.9093 30 1 -0.5292 -4.6084 0.3866 31 1 -0.0514 -4.6064 2.1119 32 1 2.3062 -5.5985 3.4570 33 1 3.8038 -5.1746 2.5934 34 1 4.4035 -7.5762 2.4531 35 1 2.9061 -8.0007 3.3167 36 1 3.6534 -6.6679 5.2691 37 1 5.1510 -6.2431 4.4060 38 1 6.1578 -8.1165 3.2151 39 1 5.1975 -9.6192 3.3730 40 1 7.8363 -9.6678 3.9626 41 1 6.6848 -10.5256 5.0406 42 1 7.7524 -9.0404 6.6109 43 1 7.9113 -7.7323 5.3934 44 1 5.5078 -8.5599 7.0113 45 1 5.9317 -6.9526 6.3584 46 1 3.1455 -3.3898 0.4552 47 1 2.4522 -4.0657 -1.0435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601452995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:18 Heat of formation + Delta-G solvation = -118.718720 kcal Electronic energy + Delta-G solvation = -27398.679416 eV Core-core repulsion = 23515.258993 eV Total energy + Delta-G solvation = -3883.420423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.39658 -38.06909 -36.84434 -35.69689 -34.90750 -34.31335 -32.22599 -31.19452 -29.27414 -29.14875 -28.30662 -26.09760 -24.85211 -22.79161 -21.58869 -21.24592 -20.56754 -19.82040 -18.54887 -17.49077 -17.08444 -16.54641 -16.51161 -15.96990 -15.64584 -15.18440 -14.97333 -14.51587 -14.18369 -14.13059 -13.78261 -13.39757 -13.28639 -13.03256 -12.96964 -12.41646 -12.19069 -12.07316 -11.89086 -11.85812 -11.81229 -11.73942 -11.64443 -11.57949 -11.47248 -11.36082 -11.15430 -11.06795 -10.98249 -10.89271 -10.54647 -10.51032 -10.35649 -10.13031 -9.33814 -8.71862 -8.62421 -8.39846 -8.18284 -6.30092 -4.37814 0.45495 2.96210 3.18366 3.25575 3.27761 3.59786 4.06324 4.22428 4.27779 4.29508 4.35444 4.56921 4.62379 4.67839 4.80739 4.97007 4.98021 5.09268 5.15017 5.28646 5.33570 5.40039 5.43518 5.47920 5.52265 5.60577 5.64274 5.76041 5.80703 5.82646 5.87513 5.90817 6.03681 6.23176 6.45867 6.60720 6.63539 6.73831 6.78224 6.93528 7.01792 7.31716 7.38265 7.71507 8.01780 8.63606 9.30227 9.37254 10.76876 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.002822 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.467984 B = 9918.384439 C =10913.623086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.132 4.132 12 C 0.120 3.880 13 N -1.008 6.008 14 S 2.626 3.374 15 O -0.957 6.957 16 O -0.959 6.959 17 C -0.636 4.636 18 C -0.113 4.113 19 C 0.059 3.941 20 N -0.532 5.532 21 C 0.033 3.967 22 C -0.130 4.130 23 C -0.144 4.144 24 C 0.040 3.960 25 C 0.135 3.865 26 H 0.268 0.732 27 H 0.380 0.620 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.999 -12.848 11.362 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.172 4.172 12 C -0.005 4.005 13 N -0.848 5.848 14 S 2.720 3.280 15 O -0.948 6.948 16 O -0.949 6.949 17 C -0.765 4.765 18 C -0.152 4.152 19 C -0.070 4.070 20 N -0.257 5.257 21 C -0.095 4.095 22 C -0.168 4.168 23 C -0.182 4.182 24 C -0.087 4.087 25 C 0.011 3.989 26 H 0.078 0.922 27 H 0.230 0.770 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.795 -14.429 10.904 20.111 hybrid contribution 0.893 2.581 0.563 2.788 sum 9.688 -11.848 11.467 19.124 Atomic orbital electron populations 1.69742 1.05933 1.27612 1.49901 1.24988 0.95008 0.99477 0.93532 0.86465 0.79678 0.82470 0.78497 1.20311 1.21181 1.19894 1.21519 0.94036 0.90530 1.51483 0.91829 1.19449 0.87491 0.90575 0.81669 1.86150 1.53967 1.58898 1.40156 1.23356 1.02606 0.90266 1.00954 1.22181 0.82506 0.97493 0.98333 1.58475 1.25145 1.34317 1.66824 1.04459 0.74457 0.72653 0.76452 1.93569 1.64640 1.83695 1.52855 1.93565 1.49258 1.64787 1.87304 1.30741 1.14170 1.06640 1.24900 1.21387 1.00952 0.94716 0.98132 1.22284 0.98231 0.90401 0.96073 1.63669 1.31376 1.24381 1.06265 1.23175 0.94004 0.98385 0.93924 1.22715 0.97869 0.98928 0.97332 1.22794 0.97192 0.99044 0.99163 1.22846 0.91203 1.00194 0.94497 1.21828 0.95390 0.87288 0.94397 0.92227 0.76992 0.91536 0.89531 0.91812 0.92485 0.84876 0.84978 0.90365 0.89493 0.90019 0.94128 0.93013 0.89832 0.90748 0.90574 0.90693 0.91476 0.90339 0.92575 0.91598 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.50 10.72 55.43 0.59 -21.91 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 19.75 29.54 -169.99 -5.02 14.73 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.54 8.20 -34.44 -0.28 -13.82 16 8 H 0.06 1.58 7.56 -52.49 -0.40 1.18 16 9 C 0.25 5.86 0.84 -89.94 -0.08 5.78 16 10 O -0.58 -14.53 13.07 -35.23 -0.46 -14.99 16 11 C -0.13 -2.79 5.49 -24.47 -0.13 -2.92 16 12 C 0.12 2.22 6.89 -2.41 -0.02 2.20 16 13 N -1.01 -18.64 3.62 -111.29 -0.40 -19.04 16 14 S 2.63 42.65 5.65 -107.50 -0.61 42.05 16 15 O -0.96 -18.12 17.60 -57.54 -1.01 -19.14 16 16 O -0.96 -17.67 17.60 -57.54 -1.01 -18.68 16 17 C -0.64 -7.45 6.18 37.16 0.23 -7.22 16 18 C -0.11 -1.23 4.89 -26.73 -0.13 -1.36 16 19 C 0.06 0.58 4.82 -3.82 -0.02 0.57 16 20 N -0.53 -5.20 5.31 -231.25 -1.23 -6.43 16 21 C 0.03 0.29 5.30 -2.30 -0.01 0.28 16 22 C -0.13 -0.94 7.08 -24.60 -0.17 -1.11 16 23 C -0.14 -0.99 6.94 -24.91 -0.17 -1.16 16 24 C 0.04 0.33 6.87 -2.84 -0.02 0.31 16 25 C 0.14 2.84 6.24 -3.07 -0.02 2.82 16 26 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 27 H 0.38 9.42 7.52 45.56 0.34 9.76 16 28 H 0.07 1.39 8.04 -51.93 -0.42 0.98 16 29 H 0.09 1.92 7.53 -51.93 -0.39 1.53 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.13 1.36 8.14 -51.92 -0.42 0.93 16 33 H 0.13 1.41 8.14 -51.92 -0.42 0.99 16 34 H 0.08 0.83 6.48 -51.93 -0.34 0.49 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.39 7.96 -51.93 -0.41 -0.02 16 38 H 0.05 0.47 7.02 -51.93 -0.36 0.11 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.44 7.49 -51.93 -0.39 0.05 16 46 H 0.07 1.26 7.64 -51.93 -0.40 0.87 16 47 H 0.07 1.44 8.07 -51.93 -0.42 1.02 16 LS Contribution 380.80 15.07 5.74 5.74 Total: -1.00 -30.15 380.80 -11.72 -41.87 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.39 Total: 9.72 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.92 Total: -13.92 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -1.04 Total: -47.38 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -2.49 Total: -52.81 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 42.65 SS G_CDS: -0.61 Total: 42.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.15 -11.72 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601452995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.847 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds