Wall clock time and date at job start Sat Apr 11 2020 03:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 116.99989 * 2 1 4 4 O 1.20827 * 120.00315 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00079 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47603 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47309 * 54.99809 * 6 5 3 8 8 N 1.46506 * 109.46999 * 295.00154 * 6 5 3 9 9 C 1.34776 * 119.99858 * 154.99904 * 8 6 5 10 10 O 1.21586 * 119.99986 * 359.97438 * 9 8 6 11 11 N 1.34771 * 119.99677 * 180.27260 * 9 8 6 12 12 C 1.39956 * 120.00044 * 174.56969 * 11 9 8 13 13 C 1.39288 * 119.94838 * 145.76882 * 12 11 9 14 14 C 1.38491 * 120.43096 * 179.97438 * 13 12 11 15 15 C 1.37676 * 120.31845 * 0.02562 * 14 13 12 16 16 C 1.40744 * 119.88803 * 0.02562 * 15 14 13 17 17 C 1.41406 * 120.20915 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99726 * 205.17677 * 17 16 15 19 19 C 1.39930 * 120.00294 * 25.18051 * 17 16 15 20 20 N 1.30831 * 120.00085 * 16.77320 * 19 17 16 21 21 Si 1.86802 * 120.00153 * 196.78152 * 19 17 16 22 22 H 1.48501 * 109.46948 * 89.99439 * 21 19 17 23 23 H 1.48491 * 109.47149 * 209.99733 * 21 19 17 24 24 H 1.48498 * 109.46822 * 329.99846 * 21 19 17 25 25 C 1.38231 * 119.94649 * 325.50124 * 12 11 9 26 26 C 1.53000 * 109.47274 * 174.99970 * 6 5 3 27 27 C 1.52999 * 117.50091 * 248.74594 * 26 6 5 28 28 C 1.52999 * 117.50021 * 180.08496 * 26 6 5 29 29 H 1.09001 * 109.47583 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47000 * 300.00058 * 1 2 3 31 31 H 1.08999 * 109.47558 * 59.99107 * 1 2 3 32 32 H 1.09004 * 109.47186 * 60.00001 * 5 3 2 33 33 H 1.09006 * 109.46815 * 300.00604 * 5 3 2 34 34 H 0.96994 * 119.99631 * 334.99458 * 8 6 5 35 35 H 0.97000 * 120.00707 * 354.57724 * 11 9 8 36 36 H 1.08005 * 119.78366 * 359.96374 * 13 12 11 37 37 H 1.08000 * 119.83917 * 180.02562 * 14 13 12 38 38 H 1.08008 * 120.05611 * 179.97438 * 15 14 13 39 39 H 0.96998 * 119.99764 * 179.97438 * 20 19 17 40 40 H 1.08005 * 120.16283 * 0.02562 * 25 12 11 41 41 H 1.08996 * 115.55249 * 34.42038 * 26 6 5 42 42 H 1.09003 * 117.49969 * 0.02562 * 27 26 6 43 43 H 1.08997 * 117.49795 * 145.02194 * 27 26 6 44 44 H 1.08997 * 117.50569 * 214.98328 * 28 26 6 45 45 H 1.09007 * 117.49637 * 359.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7419 0.0002 7 1 3.5383 3.2570 0.8425 8 7 3.5783 3.3766 -1.2511 9 6 3.3816 4.7091 -1.2979 10 8 3.5537 5.3844 -0.3015 11 7 2.9882 5.2921 -2.4475 12 6 2.6741 6.6558 -2.4688 13 6 2.9575 7.4171 -3.6003 14 6 2.6504 8.7671 -3.6324 15 6 2.0617 9.3720 -2.5448 16 6 1.7705 8.6158 -1.3940 17 6 1.1663 9.2303 -0.2729 18 1 1.3033 8.8098 0.7124 19 6 0.3910 10.3831 -0.4400 20 7 -0.0495 10.7086 -1.6281 21 14 -0.0148 11.4575 1.0333 22 1 1.0393 12.4905 1.1979 23 1 -1.3266 12.1188 0.8172 24 1 -0.0795 10.6171 2.2559 25 6 2.0781 7.2439 -1.3689 26 6 5.5229 2.8234 0.1253 27 6 6.0957 3.3826 1.4292 28 6 6.1565 4.2159 0.1466 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5140 -0.8899 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7804 0.8892 34 1 3.4407 2.8378 -2.0458 35 1 2.9226 4.7667 -3.2602 36 1 3.4198 6.9514 -4.4582 37 1 2.8740 9.3482 -4.5149 38 1 1.8244 10.4253 -2.5742 39 1 -0.5873 11.5076 -1.7438 40 1 1.8544 6.6537 -0.4925 41 1 6.0785 2.0253 -0.3670 42 1 5.3877 3.6921 2.1981 43 1 7.0282 2.9526 1.7945 44 1 7.1290 4.3338 -0.3313 45 1 5.4885 5.0740 0.0710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836762167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:52 Heat of formation + Delta-G solvation = -86.611496 kcal Electronic energy + Delta-G solvation = -28458.890603 eV Core-core repulsion = 24441.418502 eV Total energy + Delta-G solvation = -4017.472101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.86031 -41.20612 -39.49582 -38.32187 -37.49247 -36.11104 -35.44239 -34.72646 -32.31858 -31.74021 -29.73198 -28.61203 -27.25113 -25.82823 -23.61351 -23.12806 -22.73397 -22.00464 -21.62481 -21.33658 -19.63194 -19.21159 -18.57229 -17.80632 -17.55487 -17.36615 -17.08601 -16.76893 -16.46671 -16.20698 -15.67102 -15.44146 -15.14085 -14.76067 -14.72620 -14.43658 -14.24127 -13.95874 -13.52409 -13.40050 -13.06661 -12.95932 -12.93499 -12.87113 -12.77727 -12.55887 -12.30021 -12.18689 -11.94556 -11.81061 -11.60513 -11.50881 -11.31098 -11.14396 -11.08216 -10.92613 -10.70320 -9.98432 -9.38423 -8.71645 -8.57203 -6.37306 0.93860 1.04533 1.20154 1.33690 1.47335 1.48514 1.70780 1.71963 2.20302 2.27507 2.74609 2.91177 3.37714 3.51552 3.66713 3.75626 4.08207 4.10541 4.18758 4.28999 4.29780 4.34509 4.44353 4.48031 4.59991 4.64841 4.71116 4.84298 4.85989 5.05694 5.07492 5.10973 5.13284 5.20485 5.30907 5.33050 5.40472 5.46519 5.56533 5.75231 5.85282 6.06527 6.12387 6.22049 6.38605 6.69441 6.74991 6.94635 7.02065 7.16074 7.70421 8.33315 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003146 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.213871 B = 8897.717251 C = 9447.656294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.358 6.358 3 C 0.450 3.550 4 O -0.538 6.538 5 C -0.104 4.104 6 C 0.201 3.799 7 H 0.054 0.946 8 N -0.716 5.716 9 C 0.702 3.298 10 O -0.609 6.609 11 N -0.674 5.674 12 C 0.180 3.820 13 C -0.251 4.251 14 C -0.089 4.089 15 C -0.200 4.200 16 C 0.091 3.909 17 C -0.506 4.506 18 H 0.057 0.943 19 C 0.039 3.961 20 N -0.822 5.822 21 Si 0.981 3.019 22 H -0.258 1.258 23 H -0.259 1.259 24 H -0.268 1.268 25 C -0.236 4.236 26 C -0.149 4.149 27 C -0.162 4.162 28 C -0.207 4.207 29 H 0.135 0.865 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.407 0.593 35 H 0.414 0.586 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.289 0.711 40 H 0.076 0.924 41 H 0.148 0.852 42 H 0.075 0.925 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.963 -23.426 -0.577 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.294 3.706 4 O -0.427 6.427 5 C -0.141 4.141 6 C 0.096 3.904 7 H 0.072 0.928 8 N -0.371 5.371 9 C 0.403 3.597 10 O -0.488 6.488 11 N -0.322 5.322 12 C 0.086 3.914 13 C -0.273 4.273 14 C -0.108 4.108 15 C -0.220 4.220 16 C 0.088 3.912 17 C -0.535 4.535 18 H 0.076 0.924 19 C -0.176 4.176 20 N -0.448 5.448 21 Si 0.801 3.199 22 H -0.182 1.182 23 H -0.183 1.183 24 H -0.192 1.192 25 C -0.258 4.258 26 C -0.168 4.168 27 C -0.199 4.199 28 C -0.244 4.244 29 H 0.153 0.847 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.172 0.828 33 H 0.174 0.826 34 H 0.243 0.757 35 H 0.251 0.749 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.166 0.834 42 H 0.094 0.906 43 H 0.140 0.860 44 H 0.116 0.884 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.712 -22.453 0.213 23.741 hybrid contribution -0.998 0.579 0.060 1.155 sum 6.714 -21.874 0.273 22.882 Atomic orbital electron populations 1.23461 0.75475 1.05504 1.01917 1.86481 1.24308 1.32758 1.83939 1.24418 0.93403 0.81051 0.71689 1.90830 1.68236 1.37733 1.45941 1.21794 0.85637 0.96226 1.10459 1.20191 0.92548 0.91563 0.86143 0.92774 1.44817 1.73449 1.04494 1.14381 1.16044 0.77502 0.82972 0.83160 1.90886 1.58548 1.63782 1.35541 1.42350 1.70189 1.08360 1.11338 1.17271 0.96344 0.82335 0.95421 1.20434 1.13649 0.94249 0.98952 1.20823 0.97895 0.94538 0.97537 1.21289 1.05756 0.99662 0.95299 1.17809 0.89151 0.90659 0.93552 1.19720 1.29114 1.10231 0.94473 0.92439 1.26674 0.93047 0.97661 1.00182 1.69859 1.25926 1.23645 1.25389 0.85238 0.78824 0.78026 0.77763 1.18215 1.18321 1.19210 1.20914 1.10771 0.95000 0.99142 1.22704 0.93564 0.98053 1.02483 1.22982 1.03223 1.03251 0.90479 1.23158 1.02398 0.95708 1.03127 0.84680 0.92958 0.92665 0.82807 0.82590 0.75651 0.74876 0.85021 0.85719 0.87720 0.89990 0.90548 0.83437 0.90594 0.85985 0.88408 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -6.19 10.56 -51.33 -0.54 -6.74 16 3 C 0.45 9.37 7.82 71.24 0.56 9.93 16 4 O -0.54 -17.33 15.10 21.96 0.33 -17.00 16 5 C -0.10 -1.27 5.34 29.85 0.16 -1.11 16 6 C 0.20 4.46 1.83 44.99 0.08 4.54 16 7 H 0.05 1.74 7.15 -2.39 -0.02 1.73 16 8 N -0.72 -18.55 4.20 -457.82 -1.92 -20.48 16 9 C 0.70 27.08 7.62 179.06 1.36 28.45 16 10 O -0.61 -29.97 11.12 -3.99 -0.04 -30.02 16 11 N -0.67 -25.43 5.34 -317.34 -1.70 -27.12 16 12 C 0.18 8.69 6.25 38.09 0.24 8.92 16 13 C -0.25 -11.09 9.97 22.58 0.23 -10.87 16 14 C -0.09 -4.25 10.02 22.20 0.22 -4.02 16 15 C -0.20 -11.26 8.69 22.75 0.20 -11.06 16 16 C 0.09 5.54 5.57 -21.31 -0.12 5.42 16 17 C -0.51 -31.07 9.05 23.46 0.21 -30.86 16 18 H 0.06 3.60 7.90 -2.91 -0.02 3.57 16 19 C 0.04 2.15 5.16 85.25 0.44 2.59 16 20 N -0.82 -45.64 10.94 21.82 0.24 -45.40 16 21 Si 0.98 42.06 29.59 68.60 2.03 44.09 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C -0.24 -13.72 8.39 22.85 0.19 -13.53 16 26 C -0.15 -2.74 5.36 -10.79 -0.06 -2.80 16 27 C -0.16 -3.36 10.18 30.62 0.31 -3.05 16 28 C -0.21 -5.58 9.74 30.62 0.30 -5.28 16 29 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 0.91 8.13 -2.38 -0.02 0.89 16 31 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.16 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.41 7.41 8.62 -92.71 -0.80 6.61 16 35 H 0.41 11.58 8.84 -92.71 -0.82 10.76 16 36 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 37 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 38 H 0.10 6.06 6.17 -2.91 -0.02 6.04 16 39 H 0.29 14.35 8.30 -92.71 -0.77 13.58 16 40 H 0.08 4.81 6.48 -2.91 -0.02 4.80 16 41 H 0.15 1.51 8.11 -2.39 -0.02 1.49 16 42 H 0.08 1.88 8.05 -2.39 -0.02 1.86 16 43 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.08 2.96 5.02 -2.38 -0.01 2.95 16 Total: -1.00 -85.81 377.44 3.34 -82.48 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.58 Total: 41.25 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 5.52 Total: -21.07 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -3.38 Total: -93.00 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.25 Total: -53.75 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -85.81 3.34 -82.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836762167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.136 kcal (2) G-P(sol) polarization free energy of solvation -85.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds