Wall clock time and date at job start Sat Apr 11 2020 03:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34634 * 116.99870 * 2 1 4 4 O 1.21509 * 120.00201 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00122 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00241 * 179.97438 * 5 3 2 7 7 C 1.53038 * 109.45897 * 205.00243 * 6 5 3 8 8 C 1.53193 * 109.31200 * 178.62982 * 7 6 5 9 9 N 1.46925 * 108.77652 * 54.62885 * 8 7 6 10 10 C 1.34786 * 120.62796 * 126.36787 * 9 8 7 11 11 O 1.21579 * 120.00018 * 354.28940 * 10 9 8 12 12 C 1.47641 * 119.99846 * 174.56247 * 10 9 8 13 13 C 1.40018 * 119.89449 * 325.58024 * 12 10 9 14 14 C 1.36319 * 120.10597 * 179.72176 * 13 12 10 15 15 C 1.40887 * 119.88956 * 0.52612 * 14 13 12 16 16 C 1.41102 * 120.10541 * 179.72245 * 15 14 13 17 17 H 1.07999 * 120.00368 * 205.53640 * 16 15 14 18 18 C 1.40236 * 119.99702 * 25.53676 * 16 15 14 19 19 N 1.30636 * 120.00157 * 16.75091 * 18 16 15 20 20 Si 1.86806 * 119.99615 * 196.75209 * 18 16 15 21 21 H 1.48496 * 109.47274 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46740 * 120.00175 * 20 18 16 23 23 H 1.48503 * 109.46673 * 239.99675 * 20 18 16 24 24 C 1.40888 * 119.79467 * 359.74434 * 15 14 13 25 25 C 1.36315 * 119.89222 * 0.02562 * 24 15 14 26 26 C 1.46922 * 118.73996 * 306.64843 * 9 8 7 27 27 C 1.52762 * 109.01152 * 53.30935 * 26 9 8 28 28 H 1.09001 * 109.47010 * 60.00901 * 1 2 3 29 29 H 1.09002 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47704 * 300.00317 * 1 2 3 31 31 H 0.97003 * 119.99651 * 359.97438 * 5 3 2 32 32 H 1.08997 * 109.45791 * 324.97223 * 6 5 3 33 33 H 1.08995 * 109.50240 * 58.67626 * 7 6 5 34 34 H 1.08998 * 109.52383 * 298.59277 * 7 6 5 35 35 H 1.08997 * 109.58411 * 294.84627 * 8 7 6 36 36 H 1.09000 * 109.70516 * 174.48849 * 8 7 6 37 37 H 1.08006 * 119.94522 * 359.97438 * 13 12 10 38 38 H 1.07992 * 120.05442 * 180.27543 * 14 13 12 39 39 H 0.97004 * 120.00489 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.05862 * 179.97438 * 24 15 14 41 41 H 1.08001 * 119.95024 * 179.97438 * 25 24 15 42 42 H 1.09005 * 109.58530 * 173.14216 * 26 9 8 43 43 H 1.09000 * 109.58977 * 293.56425 * 26 9 8 44 44 H 1.08996 * 109.56879 * 185.55265 * 27 26 9 45 45 H 1.08999 * 109.38864 * 65.51012 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0742 2.5756 0.0000 7 6 5.4711 2.4357 -0.6092 8 6 6.1504 3.8085 -0.6396 9 7 6.1372 4.3727 0.7170 10 6 7.2789 4.7939 1.2966 11 8 8.3451 4.6145 0.7405 12 6 7.2352 5.4678 2.6095 13 6 6.1535 6.2957 2.9333 14 6 6.1060 6.9155 4.1465 15 6 7.1531 6.7307 5.0708 16 6 7.1114 7.3747 6.3256 17 1 8.0288 7.5870 6.8544 18 6 5.8786 7.7392 6.8860 19 7 4.7733 7.2106 6.4328 20 14 5.8172 8.9805 8.2807 21 1 7.1954 9.4268 8.6072 22 1 5.0035 10.1513 7.8657 23 1 5.2038 8.3504 9.4773 24 6 8.2422 5.9012 4.7382 25 6 8.2786 5.2819 3.5244 26 6 4.8570 4.4633 1.4320 27 6 4.1915 3.0883 1.4372 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9374 0.4567 0.0013 32 1 3.4895 3.2808 -0.5906 33 1 5.3882 2.0484 -1.6247 34 1 6.0648 1.7494 -0.0054 35 1 5.6080 4.4696 -1.3155 36 1 7.1800 3.7016 -0.9810 37 1 5.3534 6.4402 2.2223 38 1 5.2690 7.5503 4.3971 39 1 3.9206 7.4624 6.8207 40 1 9.0475 5.7569 5.4433 41 1 9.1133 4.6462 3.2682 42 1 5.0336 4.7860 2.4581 43 1 4.2070 5.1789 0.9286 44 1 3.1977 3.1653 1.8782 45 1 4.7964 2.3956 2.0222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856447624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:19 Heat of formation + Delta-G solvation = -92.748652 kcal Electronic energy + Delta-G solvation = -28277.070640 eV Core-core repulsion = 24259.332412 eV Total energy + Delta-G solvation = -4017.738228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73977 -39.80183 -37.93785 -37.07161 -36.27785 -34.67220 -33.90706 -31.78852 -30.98324 -29.84450 -29.50661 -27.80664 -26.15604 -24.65896 -23.37452 -22.14918 -21.26187 -21.00331 -20.64268 -19.21302 -18.45481 -17.53006 -17.19544 -16.69002 -16.50142 -15.82984 -15.37354 -15.21995 -14.82441 -14.35019 -14.32909 -14.15578 -13.86397 -13.71274 -13.29186 -13.06598 -12.89386 -12.60240 -12.36266 -12.29772 -12.08137 -11.96994 -11.68928 -11.42639 -11.28843 -11.24625 -11.06659 -10.96570 -10.92047 -10.76732 -10.64794 -10.58278 -10.04638 -9.55981 -9.40457 -9.28314 -8.96298 -8.31106 -7.67398 -7.53853 -7.01355 -4.59822 1.98969 2.27129 2.65518 2.91283 2.96066 2.98966 3.01518 3.44348 3.71567 3.76736 4.04420 4.48890 4.54588 4.74785 4.89667 4.97172 4.97828 5.13803 5.22336 5.25415 5.38895 5.48262 5.57790 5.64167 5.68263 5.83299 5.94470 6.02886 6.07351 6.07876 6.20026 6.23902 6.26266 6.31093 6.76904 6.82674 6.90482 7.04816 7.12317 7.20415 7.43433 7.59257 7.79231 7.85465 8.02373 8.08052 8.15013 8.40244 8.64080 8.74646 8.94278 9.90394 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.002913 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.433918 B = 9609.201073 C =11417.822105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.376 6.376 3 C 0.645 3.355 4 O -0.570 6.570 5 N -0.704 5.704 6 C 0.162 3.838 7 C -0.139 4.139 8 C 0.118 3.882 9 N -0.620 5.620 10 C 0.579 3.421 11 O -0.570 6.570 12 C -0.280 4.280 13 C -0.071 4.071 14 C -0.175 4.175 15 C 0.127 3.873 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.774 5.774 20 Si 0.912 3.088 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.236 4.236 25 C -0.027 4.027 26 C 0.100 3.900 27 C -0.146 4.146 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.405 0.595 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.286 0.714 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 -10.484 -9.685 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.290 6.290 3 C 0.397 3.603 4 O -0.458 6.458 5 N -0.362 5.362 6 C 0.059 3.941 7 C -0.178 4.178 8 C -0.006 4.006 9 N -0.354 5.354 10 C 0.374 3.626 11 O -0.451 6.451 12 C -0.285 4.285 13 C -0.090 4.090 14 C -0.195 4.195 15 C 0.124 3.876 16 C -0.472 4.472 17 H 0.102 0.898 18 C -0.146 4.146 19 N -0.398 5.398 20 Si 0.736 3.264 21 H -0.181 1.181 22 H -0.194 1.194 23 H -0.197 1.197 24 C -0.256 4.256 25 C -0.046 4.046 26 C -0.023 4.023 27 C -0.186 4.186 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.240 0.760 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.139 0.861 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.878 -10.105 -9.941 16.217 hybrid contribution -0.293 0.051 0.671 0.734 sum -8.171 -10.054 -9.270 15.930 Atomic orbital electron populations 1.23182 0.74411 1.03364 1.02817 1.86234 1.24238 1.31325 1.87175 1.18197 0.83588 0.82154 0.76317 1.91016 1.64569 1.34794 1.55436 1.44860 1.02829 1.10628 1.77892 1.21080 0.92692 0.82623 0.97663 1.22213 0.94669 0.99295 1.01648 1.21369 1.02381 0.92271 0.84568 1.48006 1.08056 1.63695 1.15662 1.18735 0.82055 0.76478 0.85314 1.90632 1.29517 1.59167 1.65739 1.18826 1.01185 1.12647 0.95795 1.20684 0.95178 0.96601 0.96574 1.21003 1.01639 1.04065 0.92763 1.17778 0.90376 0.87267 0.92201 1.19849 0.93494 1.31379 1.02488 0.89786 1.26070 0.95061 0.95178 0.98319 1.69727 0.99535 1.33388 1.37108 0.86188 0.79923 0.80303 0.80027 1.18126 1.19419 1.19712 1.20702 1.02270 1.04918 0.97677 1.20267 0.94879 0.96629 0.92845 1.22133 0.83958 0.95561 1.00670 1.22318 1.01991 0.98207 0.96044 0.91892 0.88071 0.91746 0.75985 0.88905 0.90262 0.90620 0.91843 0.88513 0.88274 0.86118 0.90329 0.88432 0.88602 0.86125 0.91784 0.90181 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.56 101.05 1.07 1.50 16 2 O -0.38 -3.98 10.62 -40.31 -0.43 -4.41 16 3 C 0.64 8.05 8.71 54.06 0.47 8.52 16 4 O -0.57 -8.87 15.80 -19.28 -0.30 -9.18 16 5 N -0.70 -7.31 5.08 -58.69 -0.30 -7.61 16 6 C 0.16 1.83 2.42 -67.89 -0.16 1.67 16 7 C -0.14 -1.43 5.55 -26.61 -0.15 -1.58 16 8 C 0.12 1.54 6.44 -3.71 -0.02 1.51 16 9 N -0.62 -10.16 2.98 -174.22 -0.52 -10.68 16 10 C 0.58 11.97 7.38 -12.42 -0.09 11.88 16 11 O -0.57 -13.14 16.20 5.30 0.09 -13.06 16 12 C -0.28 -6.23 5.34 -104.73 -0.56 -6.79 16 13 C -0.07 -1.56 7.28 -39.61 -0.29 -1.84 16 14 C -0.18 -4.22 8.63 -39.27 -0.34 -4.56 16 15 C 0.13 3.18 5.57 -106.81 -0.59 2.59 16 16 C -0.44 -10.95 9.05 -37.75 -0.34 -11.29 16 17 H 0.08 1.99 7.90 -52.49 -0.41 1.58 16 18 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 19 N -0.77 -18.29 10.94 55.56 0.61 -17.68 16 20 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 16 21 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 24 C -0.24 -5.61 9.73 -39.27 -0.38 -5.99 16 25 C -0.03 -0.62 9.53 -39.61 -0.38 -1.00 16 26 C 0.10 1.51 4.72 -3.93 -0.02 1.49 16 27 C -0.15 -1.93 5.64 -26.83 -0.15 -2.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.41 3.26 8.71 -40.82 -0.36 2.91 16 32 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.38 6.99 -51.93 -0.36 1.01 16 37 H 0.10 1.91 5.91 -52.48 -0.31 1.60 16 38 H 0.12 2.96 6.18 -52.49 -0.32 2.64 16 39 H 0.29 6.08 8.29 -40.82 -0.34 5.74 16 40 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.10 2.10 7.97 -52.49 -0.42 1.68 16 42 H 0.12 2.12 4.39 -51.93 -0.23 1.89 16 43 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -30.05 369.37 -8.51 -38.57 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.16 Total: 10.60 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.03 Total: -4.34 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.21 Total: -35.97 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.65 Total: -26.65 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.05 -8.51 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856447624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.181 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds