Wall clock time and date at job start Sat Apr 11 2020 03:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34634 * 116.99870 * 2 1 4 4 O 1.21509 * 120.00201 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00122 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00241 * 179.97438 * 5 3 2 7 7 C 1.53038 * 109.45897 * 205.00243 * 6 5 3 8 8 C 1.53193 * 109.31200 * 178.62982 * 7 6 5 9 9 N 1.46925 * 108.77652 * 54.62885 * 8 7 6 10 10 C 1.34786 * 120.62796 * 126.36787 * 9 8 7 11 11 O 1.21579 * 120.00018 * 354.28940 * 10 9 8 12 12 C 1.47641 * 119.99846 * 174.56247 * 10 9 8 13 13 C 1.40018 * 119.89449 * 325.58024 * 12 10 9 14 14 C 1.36319 * 120.10597 * 179.72176 * 13 12 10 15 15 C 1.40887 * 119.88956 * 0.52612 * 14 13 12 16 16 C 1.41102 * 120.10541 * 179.72245 * 15 14 13 17 17 H 1.07999 * 120.00368 * 205.53640 * 16 15 14 18 18 C 1.40236 * 119.99702 * 25.53676 * 16 15 14 19 19 N 1.30636 * 120.00157 * 16.75091 * 18 16 15 20 20 Si 1.86806 * 119.99615 * 196.75209 * 18 16 15 21 21 H 1.48496 * 109.47274 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46740 * 120.00175 * 20 18 16 23 23 H 1.48503 * 109.46673 * 239.99675 * 20 18 16 24 24 C 1.40888 * 119.79467 * 359.74434 * 15 14 13 25 25 C 1.36315 * 119.89222 * 0.02562 * 24 15 14 26 26 C 1.46922 * 118.73996 * 306.64843 * 9 8 7 27 27 C 1.52762 * 109.01152 * 53.30935 * 26 9 8 28 28 H 1.09001 * 109.47010 * 60.00901 * 1 2 3 29 29 H 1.09002 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47704 * 300.00317 * 1 2 3 31 31 H 0.97003 * 119.99651 * 359.97438 * 5 3 2 32 32 H 1.08997 * 109.45791 * 324.97223 * 6 5 3 33 33 H 1.08995 * 109.50240 * 58.67626 * 7 6 5 34 34 H 1.08998 * 109.52383 * 298.59277 * 7 6 5 35 35 H 1.08997 * 109.58411 * 294.84627 * 8 7 6 36 36 H 1.09000 * 109.70516 * 174.48849 * 8 7 6 37 37 H 1.08006 * 119.94522 * 359.97438 * 13 12 10 38 38 H 1.07992 * 120.05442 * 180.27543 * 14 13 12 39 39 H 0.97004 * 120.00489 * 179.97438 * 19 18 16 40 40 H 1.08002 * 120.05862 * 179.97438 * 24 15 14 41 41 H 1.08001 * 119.95024 * 179.97438 * 25 24 15 42 42 H 1.09005 * 109.58530 * 173.14216 * 26 9 8 43 43 H 1.09000 * 109.58977 * 293.56425 * 26 9 8 44 44 H 1.08996 * 109.56879 * 185.55265 * 27 26 9 45 45 H 1.08999 * 109.38864 * 65.51012 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0742 2.5756 0.0000 7 6 5.4711 2.4357 -0.6092 8 6 6.1504 3.8085 -0.6396 9 7 6.1372 4.3727 0.7170 10 6 7.2789 4.7939 1.2966 11 8 8.3451 4.6145 0.7405 12 6 7.2352 5.4678 2.6095 13 6 6.1535 6.2957 2.9333 14 6 6.1060 6.9155 4.1465 15 6 7.1531 6.7307 5.0708 16 6 7.1114 7.3747 6.3256 17 1 8.0288 7.5870 6.8544 18 6 5.8786 7.7392 6.8860 19 7 4.7733 7.2106 6.4328 20 14 5.8172 8.9805 8.2807 21 1 7.1954 9.4268 8.6072 22 1 5.0035 10.1513 7.8657 23 1 5.2038 8.3504 9.4773 24 6 8.2422 5.9012 4.7382 25 6 8.2786 5.2819 3.5244 26 6 4.8570 4.4633 1.4320 27 6 4.1915 3.0883 1.4372 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9374 0.4567 0.0013 32 1 3.4895 3.2808 -0.5906 33 1 5.3882 2.0484 -1.6247 34 1 6.0648 1.7494 -0.0054 35 1 5.6080 4.4696 -1.3155 36 1 7.1800 3.7016 -0.9810 37 1 5.3534 6.4402 2.2223 38 1 5.2690 7.5503 4.3971 39 1 3.9206 7.4624 6.8207 40 1 9.0475 5.7569 5.4433 41 1 9.1133 4.6462 3.2682 42 1 5.0336 4.7860 2.4581 43 1 4.2070 5.1789 0.9286 44 1 3.1977 3.1653 1.8782 45 1 4.7964 2.3956 2.0222 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856447624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:19 Heat of formation + Delta-G solvation = -111.314126 kcal Electronic energy + Delta-G solvation = -28277.875699 eV Core-core repulsion = 24259.332412 eV Total energy + Delta-G solvation = -4018.543287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74679 -41.16080 -39.30443 -38.60548 -37.35881 -35.88585 -35.61657 -33.06967 -32.14253 -31.45510 -31.28838 -28.57028 -27.77970 -25.92291 -24.55415 -23.57466 -22.75696 -22.35265 -21.85859 -20.49175 -19.54130 -19.32291 -18.27129 -17.91358 -17.52306 -17.37007 -16.93214 -16.27547 -16.14620 -15.81895 -15.38299 -15.36138 -15.10088 -15.02715 -14.53793 -14.45720 -14.29375 -14.09140 -13.86339 -13.66891 -13.24116 -13.19144 -12.96710 -12.88326 -12.82786 -12.66052 -12.38372 -12.24604 -12.08629 -11.81672 -11.77356 -11.75225 -11.66195 -11.32844 -11.08809 -10.67779 -10.27288 -9.69835 -9.48113 -9.34819 -8.75525 -6.45791 0.51789 1.12723 1.17246 1.38999 1.42575 1.55049 1.70163 1.99709 2.14680 2.18889 2.73593 3.24117 3.57695 3.65626 3.75459 3.93933 4.02677 4.11146 4.23974 4.34176 4.35448 4.37440 4.42266 4.43594 4.53756 4.68921 4.72758 4.83198 4.86387 4.91689 4.97155 5.01437 5.05112 5.10523 5.17945 5.29287 5.30957 5.38732 5.59044 5.66289 5.82490 5.98274 6.01351 6.24363 6.34874 6.47756 6.56636 6.80359 6.90534 7.26323 7.34627 8.19171 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012590 B = 0.002913 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.433918 B = 9609.201073 C =11417.822105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.643 3.357 4 O -0.605 6.605 5 N -0.691 5.691 6 C 0.170 3.830 7 C -0.126 4.126 8 C 0.112 3.888 9 N -0.610 5.610 10 C 0.577 3.423 11 O -0.598 6.598 12 C -0.286 4.286 13 C -0.058 4.058 14 C -0.195 4.195 15 C 0.101 3.899 16 C -0.477 4.477 17 H 0.083 0.917 18 C 0.039 3.961 19 N -0.800 5.800 20 Si 0.984 3.016 21 H -0.258 1.258 22 H -0.262 1.262 23 H -0.264 1.264 24 C -0.250 4.250 25 C -0.036 4.036 26 C 0.100 3.900 27 C -0.138 4.138 28 H 0.062 0.938 29 H 0.136 0.864 30 H 0.057 0.943 31 H 0.419 0.581 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.295 0.705 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.980 -11.374 -10.714 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.396 3.604 4 O -0.496 6.496 5 N -0.350 5.350 6 C 0.066 3.934 7 C -0.164 4.164 8 C -0.011 4.011 9 N -0.342 5.342 10 C 0.371 3.629 11 O -0.481 6.481 12 C -0.290 4.290 13 C -0.077 4.077 14 C -0.215 4.215 15 C 0.098 3.902 16 C -0.504 4.504 17 H 0.101 0.899 18 C -0.180 4.180 19 N -0.424 5.424 20 Si 0.805 3.195 21 H -0.182 1.182 22 H -0.186 1.186 23 H -0.188 1.188 24 C -0.270 4.270 25 C -0.055 4.055 26 C -0.022 4.022 27 C -0.178 4.178 28 H 0.081 0.919 29 H 0.154 0.846 30 H 0.076 0.924 31 H 0.256 0.744 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.112 -11.053 -10.997 18.059 hybrid contribution 0.010 0.219 0.899 0.926 sum -9.102 -10.835 -10.098 17.384 Atomic orbital electron populations 1.23486 0.72864 1.05583 1.02523 1.86250 1.25752 1.30126 1.86769 1.18386 0.83969 0.82211 0.75873 1.90994 1.65440 1.36064 1.57104 1.44702 1.02375 1.10904 1.77044 1.20920 0.93352 0.83023 0.96058 1.22110 0.93277 0.97530 1.03506 1.21656 1.02647 0.94169 0.82603 1.47981 1.07127 1.62311 1.16819 1.18481 0.82865 0.76711 0.84818 1.90614 1.30746 1.60433 1.66335 1.19120 1.00808 1.12456 0.96629 1.20855 0.95423 0.95244 0.96179 1.20998 1.01607 1.05134 0.93717 1.18110 0.91161 0.87984 0.92992 1.20078 0.94404 1.32996 1.02943 0.89937 1.26858 0.94160 0.96383 1.00594 1.69750 1.00245 1.34067 1.38298 0.85112 0.79809 0.77743 0.76876 1.18181 1.18637 1.18843 1.20841 1.02494 1.05314 0.98338 1.20437 0.95499 0.96704 0.92899 1.22104 0.83620 0.97280 0.99237 1.22204 1.01075 0.96957 0.97560 0.91890 0.84619 0.92407 0.74379 0.89249 0.87013 0.90634 0.89618 0.89482 0.85856 0.87017 0.89354 0.87854 0.87967 0.88754 0.90039 0.90901 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.56 113.37 1.20 1.86 16 2 O -0.38 -7.20 10.62 -55.43 -0.59 -7.79 16 3 C 0.64 14.89 8.71 129.79 1.13 16.02 16 4 O -0.60 -18.14 15.80 19.81 0.31 -17.83 16 5 N -0.69 -12.66 5.08 -570.00 -2.90 -15.56 16 6 C 0.17 3.42 2.42 45.02 0.11 3.53 16 7 C -0.13 -2.18 5.55 30.67 0.17 -2.00 16 8 C 0.11 2.63 6.44 86.36 0.56 3.19 16 9 N -0.61 -19.14 2.98 -823.37 -2.45 -21.59 16 10 C 0.58 23.63 7.38 86.72 0.64 24.27 16 11 O -0.60 -27.42 16.20 -3.97 -0.06 -27.49 16 12 C -0.29 -12.83 5.34 -19.93 -0.11 -12.94 16 13 C -0.06 -2.56 7.28 22.25 0.16 -2.40 16 14 C -0.20 -9.65 8.63 22.47 0.19 -9.46 16 15 C 0.10 5.22 5.57 -21.28 -0.12 5.10 16 16 C -0.48 -24.18 9.05 23.46 0.21 -23.97 16 17 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 18 C 0.04 1.80 5.15 85.36 0.44 2.24 16 19 N -0.80 -38.27 10.94 21.87 0.24 -38.03 16 20 Si 0.98 35.26 29.59 68.60 2.03 37.29 16 21 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 22 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 23 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 24 C -0.25 -12.31 9.73 22.47 0.22 -12.09 16 25 C -0.04 -1.71 9.53 22.25 0.21 -1.49 16 26 C 0.10 2.91 4.72 86.22 0.41 3.31 16 27 C -0.14 -3.47 5.64 30.53 0.17 -3.30 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.42 5.51 8.71 -92.71 -0.81 4.71 16 32 H 0.09 1.96 7.58 -2.39 -0.02 1.94 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.09 2.30 6.99 -2.39 -0.02 2.29 16 37 H 0.12 4.69 5.91 -2.91 -0.02 4.68 16 38 H 0.11 5.65 6.18 -2.91 -0.02 5.63 16 39 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 40 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.10 4.58 7.97 -2.91 -0.02 4.56 16 42 H 0.09 3.29 4.39 -2.38 -0.01 3.28 16 43 H 0.08 2.11 8.03 -2.39 -0.02 2.09 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 45 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -66.38 369.37 2.40 -63.98 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.22 Total: 35.15 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 5.60 Total: -8.14 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -5.11 Total: -75.18 kcal Atomic # 8 Polarization: -52.76 SS G_CDS: -0.34 Total: -53.10 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Total: -66.38 2.40 -63.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856447624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.332 kcal (2) G-P(sol) polarization free energy of solvation -66.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds