Wall clock time and date at job start Sat Apr 11 2020 03:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64697 * 179.97438 * 9 7 2 11 11 C 1.54321 * 107.26694 * 181.02527 * 10 9 7 12 12 H 1.09000 * 110.72011 * 140.55689 * 11 10 9 13 13 N 1.46501 * 110.71578 * 263.64739 * 11 10 9 14 14 C 1.34780 * 120.00341 * 273.54850 * 13 11 10 15 15 O 1.21280 * 119.99786 * 0.02562 * 14 13 11 16 16 C 1.50699 * 119.99949 * 180.02562 * 14 13 11 17 17 H 1.09005 * 109.63258 * 299.99994 * 16 14 13 18 18 C 1.53306 * 109.63535 * 179.60040 * 16 14 13 19 19 C 1.52724 * 108.56896 * 170.72636 * 18 16 14 20 20 C 1.50435 * 110.59070 * 50.72520 * 19 18 16 21 21 N 1.32893 * 118.53413 * 162.71942 * 20 19 18 22 22 C 1.31601 * 121.06484 * 179.44758 * 21 20 19 23 23 N 1.31818 * 121.67107 * 0.03171 * 22 21 20 24 24 C 1.32186 * 120.63818 * 0.10848 * 23 22 21 25 25 C 1.37776 * 122.58262 * 342.38881 * 20 19 18 26 26 C 1.50341 * 122.79687 * 0.68337 * 25 20 19 27 27 C 1.55153 * 102.94671 * 22.18991 * 11 10 9 28 28 H 1.08999 * 111.00098 * 82.57596 * 27 11 10 29 29 O 1.42895 * 111.00347 * 206.38534 * 27 11 10 30 30 C 1.47426 * 125.64675 * 359.68852 * 9 7 2 31 31 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.87851 * 300.43791 * 10 9 7 33 33 H 1.08997 * 109.87950 * 61.60369 * 10 9 7 34 34 H 0.97001 * 119.99714 * 93.55256 * 13 11 10 35 35 H 1.09004 * 109.63055 * 290.23565 * 18 16 14 36 36 H 1.09007 * 109.62926 * 50.80805 * 18 16 14 37 37 H 1.09003 * 109.12080 * 290.45618 * 19 18 16 38 38 H 1.08998 * 109.18709 * 171.03947 * 19 18 16 39 39 H 1.08004 * 119.16203 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.36064 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.30548 * 222.10904 * 26 25 20 42 42 H 1.09000 * 109.30675 * 102.70500 * 26 25 20 43 43 H 0.96705 * 114.00225 * 179.97438 * 29 27 11 44 44 H 1.08994 * 110.36510 * 274.74946 * 30 9 7 45 45 H 1.09001 * 110.36249 * 37.07349 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.9319 -3.7275 0.0005 11 6 0.7785 -4.7524 -0.0258 12 1 1.0237 -5.5923 -0.6758 13 7 0.4697 -5.2199 1.3278 14 6 1.1507 -6.2571 1.8543 15 8 2.0194 -6.8029 1.2077 16 6 0.8325 -6.7383 3.2465 17 1 0.9949 -5.9299 3.9595 18 6 1.7353 -7.9259 3.5999 19 6 1.5603 -8.2454 5.0831 20 6 0.1018 -8.3783 5.4271 21 7 -0.2300 -8.9856 6.5616 22 6 -1.4901 -9.1196 6.9168 23 7 -2.4729 -8.6609 6.1676 24 6 -2.2188 -8.0482 5.0242 25 6 -0.8993 -7.8898 4.6163 26 6 -0.6244 -7.1955 3.3115 27 6 -0.4019 -3.9324 -0.6102 28 1 -0.3529 -3.8983 -1.6986 29 8 -1.6567 -4.4579 -0.1729 30 6 -0.1415 -2.5331 0.0065 31 1 -0.4850 0.8401 0.0004 32 1 2.5579 -3.8510 -0.8833 33 1 2.5289 -3.8641 0.9022 34 1 -0.2250 -4.7831 1.8451 35 1 1.4485 -8.7935 3.0056 36 1 2.7751 -7.6682 3.3984 37 1 1.9986 -7.4423 5.6755 38 1 2.0709 -9.1811 5.3106 39 1 -1.7249 -9.6182 7.8457 40 1 -3.0275 -7.6745 4.4136 41 1 -1.2786 -6.3285 3.2198 42 1 -0.8236 -7.8823 2.4888 43 1 -2.4242 -3.9774 -0.5124 44 1 -0.5228 -2.4888 1.0266 45 1 -0.6018 -1.7576 -0.6056 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083516921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:07:37 Heat of formation + Delta-G solvation = -16.639160 kcal Electronic energy + Delta-G solvation = -28713.415718 eV Core-core repulsion = 24731.270596 eV Total energy + Delta-G solvation = -3982.145122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -41.61697 -39.93463 -38.13005 -36.65897 -35.13969 -34.34658 -33.80699 -31.84585 -31.63462 -30.48773 -28.43784 -27.14665 -25.55727 -24.70516 -24.17307 -23.25512 -21.58838 -20.51205 -19.92026 -19.71719 -18.08275 -17.27236 -17.17818 -16.95549 -16.64279 -15.85501 -15.38817 -15.14691 -14.94020 -14.57127 -14.20766 -14.08103 -13.96810 -13.91358 -13.62045 -13.26387 -13.02184 -12.88710 -12.54243 -12.39246 -12.25847 -11.97052 -11.39761 -11.36596 -11.19677 -11.14436 -11.03831 -10.99531 -10.91693 -10.61717 -10.24955 -10.12588 -9.91650 -9.54214 -9.46380 -9.41811 -9.26957 -8.81773 -8.64742 -6.97786 -5.78118 -3.20151 0.64585 0.79098 2.80934 3.32983 3.35623 3.39320 3.40626 3.48818 3.74140 3.95046 4.17616 4.30077 4.33421 4.39842 4.51691 4.63458 4.80202 5.00853 5.04975 5.17203 5.19467 5.27801 5.28170 5.33439 5.39292 5.47967 5.54430 5.62443 5.64077 5.79172 5.81387 5.90573 6.03554 6.08380 6.17840 6.19003 6.43648 6.58906 6.72949 6.93005 7.20355 7.47905 7.65102 7.81912 7.83144 7.97983 8.19761 8.46956 9.08695 9.69186 10.31438 11.25946 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002713 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.709579 B =10319.136326 C =10383.010009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.126 3.874 11 C 0.144 3.856 12 H 0.090 0.910 13 N -0.696 5.696 14 C 0.519 3.481 15 O -0.546 6.546 16 C -0.108 4.108 17 H 0.102 0.898 18 C -0.098 4.098 19 C -0.074 4.074 20 C 0.181 3.819 21 N -0.522 5.522 22 C 0.286 3.714 23 N -0.523 5.523 24 C 0.152 3.848 25 C -0.175 4.175 26 C -0.063 4.063 27 C 0.064 3.936 28 H 0.071 0.929 29 O -0.567 6.567 30 C 0.128 3.872 31 H 0.253 0.747 32 H 0.036 0.964 33 H 0.032 0.968 34 H 0.405 0.595 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.194 0.806 40 H 0.170 0.830 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.379 0.621 44 H 0.020 0.980 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 -15.763 7.809 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.328 5.328 10 C -0.001 4.001 11 C 0.038 3.962 12 H 0.108 0.892 13 N -0.346 5.346 14 C 0.304 3.696 15 O -0.424 6.424 16 C -0.130 4.130 17 H 0.120 0.880 18 C -0.136 4.136 19 C -0.112 4.112 20 C 0.037 3.963 21 N -0.236 5.236 22 C -0.002 4.002 23 N -0.237 5.237 24 C -0.015 4.015 25 C -0.179 4.179 26 C -0.102 4.102 27 C 0.003 3.997 28 H 0.089 0.911 29 O -0.371 6.371 30 C 0.002 3.998 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.240 0.760 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.211 0.789 40 H 0.187 0.813 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.226 0.774 44 H 0.038 0.962 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.702 -16.812 8.503 19.200 hybrid contribution -0.160 1.972 -0.632 2.077 sum -3.862 -14.839 7.871 17.236 Atomic orbital electron populations 1.69735 1.04909 1.24925 1.57751 1.24783 0.95782 0.97808 1.02236 0.86033 0.78572 0.83049 0.77623 1.21586 1.20611 1.21598 1.19103 0.90612 0.82199 1.43070 0.90269 1.44344 1.01447 0.99886 1.87108 1.21751 0.93768 0.85437 0.99098 1.21992 0.94836 0.96226 0.83124 0.89204 1.45712 1.38990 1.33082 1.16816 1.20307 0.81595 0.79794 0.87885 1.90682 1.32203 1.57458 1.62068 1.21352 0.96121 0.99894 0.95609 0.88009 1.21403 1.01038 0.97296 0.93892 1.20473 0.89373 1.04081 0.97243 1.21398 0.96904 0.89385 0.88587 1.68397 1.22292 1.16146 1.16770 1.24888 0.83526 0.93304 0.98434 1.68422 1.37967 1.11212 1.06069 1.23324 0.95342 0.91074 0.91789 1.21139 0.95209 1.02219 0.99366 1.20297 0.95715 1.00590 0.93585 1.23741 0.82320 0.96032 0.97591 0.91123 1.86312 1.15599 1.58930 1.76276 1.22601 0.85610 0.92561 0.99003 0.93649 0.94631 0.95023 0.76018 0.90751 0.89159 0.88878 0.88734 0.78901 0.81291 0.89084 0.89229 0.77417 0.96184 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.46 10.08 55.49 0.56 -24.91 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -5.95 10.27 -15.06 -0.15 -6.10 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -14.54 3.39 -169.95 -0.58 -15.12 16 10 C 0.13 2.61 6.98 -3.06 -0.02 2.59 16 11 C 0.14 2.51 3.13 -66.10 -0.21 2.30 16 12 H 0.09 1.56 7.69 -51.93 -0.40 1.16 16 13 N -0.70 -10.60 4.69 -52.03 -0.24 -10.85 16 14 C 0.52 7.56 7.13 -10.98 -0.08 7.48 16 15 O -0.55 -9.71 15.57 5.56 0.09 -9.63 16 16 C -0.11 -1.16 2.54 -91.70 -0.23 -1.39 16 17 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 18 C -0.10 -0.98 4.71 -26.71 -0.13 -1.10 16 19 C -0.07 -0.66 5.95 -28.15 -0.17 -0.83 16 20 C 0.18 1.89 6.63 -82.43 -0.55 1.34 16 21 N -0.52 -5.75 10.32 -11.00 -0.11 -5.86 16 22 C 0.29 2.85 12.29 -92.30 -1.13 1.72 16 23 N -0.52 -5.58 10.44 -14.54 -0.15 -5.73 16 24 C 0.15 1.44 10.93 -17.11 -0.19 1.26 16 25 C -0.18 -1.70 5.74 -104.68 -0.60 -2.30 16 26 C -0.06 -0.58 4.89 -28.14 -0.14 -0.72 16 27 C 0.06 1.09 4.23 -24.48 -0.10 0.99 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 O -0.57 -8.16 12.64 -35.23 -0.45 -8.61 16 30 C 0.13 2.80 5.62 -2.42 -0.01 2.79 16 31 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 34 H 0.40 5.82 7.86 -40.82 -0.32 5.50 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.09 0.96 7.81 -51.92 -0.41 0.56 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.19 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.09 0.75 7.85 -51.93 -0.41 0.35 16 42 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 43 H 0.38 4.14 9.12 45.56 0.42 4.55 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.11 2.74 5.86 -51.93 -0.30 2.43 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -32.38 366.07 -9.81 -42.19 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.61 Total: 8.99 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -3.81 Total: 7.63 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.53 Total: -62.46 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.36 Total: -18.23 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.38 -9.81 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083516921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.547 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds