Wall clock time and date at job start Sat Apr 11 2020 03:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48504 * 109.47040 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47379 * 300.00511 * 3 2 1 6 6 H 1.48509 * 109.46883 * 60.00317 * 3 2 1 7 7 C 1.38814 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99993 * 179.72092 * 7 2 1 9 9 N 1.36944 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99463 * 174.68556 * 9 7 2 11 11 C 1.53005 * 115.54927 * 65.17976 * 10 9 7 12 12 N 1.46503 * 109.46986 * 86.39315 * 11 10 9 13 13 C 1.34785 * 119.99659 * 174.96692 * 12 11 10 14 14 O 1.21281 * 120.00102 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99563 * 179.97438 * 13 12 11 16 16 N 1.46500 * 109.46956 * 180.02562 * 15 13 12 17 17 C 1.34774 * 120.00437 * 179.97438 * 16 15 13 18 18 O 1.21585 * 119.99696 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00228 * 179.97438 * 17 16 15 20 20 C 1.39940 * 119.99826 * 184.98850 * 19 17 16 21 21 C 1.38865 * 120.07217 * 213.07600 * 20 19 17 22 22 C 1.38113 * 119.93338 * 179.77476 * 21 20 19 23 23 C 1.38279 * 120.06911 * 0.49806 * 22 21 20 24 24 C 1.38277 * 120.13964 * 359.75443 * 23 22 21 25 25 C 1.38122 * 120.07041 * 359.97438 * 24 23 22 26 26 C 1.52994 * 117.50262 * 279.50140 * 10 9 7 27 27 C 1.53003 * 117.49568 * 210.84147 * 10 9 7 28 28 H 0.97005 * 119.99906 * 359.97438 * 1 2 3 29 29 H 0.97002 * 119.99875 * 354.68985 * 9 7 2 30 30 H 1.08997 * 109.46987 * 206.38964 * 11 10 9 31 31 H 1.09003 * 109.46996 * 326.39416 * 11 10 9 32 32 H 0.96994 * 120.00441 * 354.96601 * 12 11 10 33 33 H 1.08998 * 109.47588 * 299.99611 * 15 13 12 34 34 H 1.08999 * 109.47629 * 60.00496 * 15 13 12 35 35 H 0.97007 * 119.99669 * 359.97438 * 16 15 13 36 36 H 0.96999 * 119.99924 * 4.99027 * 19 17 16 37 37 H 1.08007 * 120.03103 * 359.97438 * 21 20 19 38 38 H 1.08001 * 119.96712 * 180.25540 * 22 21 20 39 39 H 1.08001 * 119.93261 * 179.72434 * 23 22 21 40 40 H 1.08008 * 119.96711 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.03361 * 179.97438 * 25 24 23 42 42 H 1.08996 * 117.49893 * 0.02562 * 26 10 9 43 43 H 1.09008 * 117.49826 * 145.02031 * 26 10 9 44 44 H 1.09007 * 117.49977 * 214.97964 * 27 10 9 45 45 H 1.08993 * 117.50236 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2123 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0051 9 7 1.3254 -2.3881 -0.0005 10 6 2.0532 -3.6540 -0.1186 11 6 2.9827 -3.9922 1.0487 12 7 2.2222 -4.6800 2.0951 13 6 2.8568 -5.1661 3.1803 14 8 4.0573 -5.0337 3.2907 15 6 2.0745 -5.8730 4.2569 16 7 2.9857 -6.3027 5.3204 17 6 2.5055 -6.9596 6.3948 18 8 1.3160 -7.1961 6.4811 19 7 3.3440 -7.3554 7.3730 20 6 2.8634 -8.1275 8.4366 21 6 3.4132 -7.9852 9.7038 22 6 2.9335 -8.7454 10.7524 23 6 1.9139 -9.6548 10.5393 24 6 1.3679 -9.8026 9.2776 25 6 1.8394 -9.0414 8.2259 26 6 2.4899 -4.0900 -1.5186 27 6 1.3411 -4.8160 -0.8141 28 1 -0.4850 0.8401 0.0004 29 1 0.3586 -2.3898 0.0776 30 1 3.7857 -4.6402 0.6977 31 1 3.4076 -3.0733 1.4528 32 1 1.2621 -4.7855 2.0070 33 1 1.3292 -5.1935 4.6701 34 1 1.5759 -6.7439 3.8314 35 1 3.9348 -6.1143 5.2514 36 1 4.2805 -7.1049 7.3398 37 1 4.2129 -7.2785 9.8699 38 1 3.3579 -8.6322 11.7391 39 1 1.5435 -10.2513 11.3600 40 1 0.5713 -10.5135 9.1143 41 1 1.4127 -9.1576 7.2406 42 1 2.2361 -3.4347 -2.3518 43 1 3.4393 -4.6180 -1.6081 44 1 1.5352 -5.8214 -0.4404 45 1 0.3311 -4.6387 -1.1834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323509132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 03:06:05 Heat of formation + Delta-G solvation = 8.037961 kcal Electronic energy + Delta-G solvation = -26821.874056 eV Core-core repulsion = 22840.799014 eV Total energy + Delta-G solvation = -3981.075041 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.96489 -39.75103 -38.75640 -37.60721 -35.07676 -34.68696 -33.96136 -33.06355 -31.15443 -30.12728 -29.76557 -28.32188 -25.76145 -23.95193 -23.24557 -22.68930 -21.97667 -21.01729 -20.41843 -19.39938 -18.85003 -18.10366 -17.20559 -16.66235 -16.50791 -16.19605 -16.02873 -15.54204 -15.21337 -15.03806 -14.58661 -14.40294 -14.16581 -14.09529 -13.72906 -13.60196 -13.26829 -13.14905 -13.04676 -12.87721 -12.10847 -11.98842 -11.96464 -11.52908 -11.06038 -11.02690 -10.93672 -10.71138 -10.41226 -10.36700 -10.26559 -9.99945 -9.76684 -9.45064 -9.39867 -9.17704 -8.93870 -8.82324 -8.35058 -7.13084 -5.88973 -3.20057 1.04718 1.16262 2.17606 2.60110 2.83484 3.25201 3.37242 3.44028 3.45660 3.60703 3.88766 4.33578 4.52577 4.62591 4.70124 4.74526 4.90898 5.13566 5.13766 5.16826 5.21663 5.22905 5.29753 5.32727 5.41586 5.56457 5.72645 5.73879 5.98722 5.99614 6.03281 6.07890 6.14188 6.25286 6.32517 6.36406 6.48578 6.54341 6.58826 6.64938 6.73506 6.79655 7.56179 7.63738 7.64378 8.19672 8.22682 8.28997 9.40411 9.93320 10.28316 11.32769 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.001913 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.421450 B =14636.424786 C =15272.027474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.689 5.689 10 C 0.126 3.874 11 C 0.146 3.854 12 N -0.704 5.704 13 C 0.505 3.495 14 O -0.549 6.549 15 C 0.118 3.882 16 N -0.726 5.726 17 C 0.707 3.293 18 O -0.573 6.573 19 N -0.687 5.687 20 C 0.170 3.830 21 C -0.150 4.150 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.100 4.100 25 C -0.121 4.121 26 C -0.186 4.186 27 C -0.185 4.185 28 H 0.256 0.744 29 H 0.388 0.612 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.405 0.595 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.410 0.590 36 H 0.409 0.591 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -20.046 15.584 26.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.091 0.909 9 N -0.328 5.328 10 C 0.032 3.968 11 C 0.021 3.979 12 N -0.354 5.354 13 C 0.290 3.710 14 O -0.428 6.428 15 C -0.010 4.010 16 N -0.384 5.384 17 C 0.407 3.593 18 O -0.450 6.450 19 N -0.334 5.334 20 C 0.075 3.925 21 C -0.171 4.171 22 C -0.119 4.119 23 C -0.160 4.160 24 C -0.119 4.119 25 C -0.142 4.142 26 C -0.226 4.226 27 C -0.223 4.223 28 H 0.066 0.934 29 H 0.223 0.777 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.239 0.761 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.244 0.756 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.154 0.846 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.573 -19.910 15.601 25.901 hybrid contribution 0.521 1.304 -0.205 1.419 sum 6.094 -18.607 15.396 24.907 Atomic orbital electron populations 1.69667 1.05133 1.25826 1.57081 1.24777 0.95537 0.97819 1.02423 0.86109 0.78926 0.83884 0.77220 1.20392 1.21768 1.21793 1.19207 0.91187 0.83476 1.43271 0.90876 1.41803 1.05808 0.98504 1.86727 1.20156 0.97484 0.88363 0.90797 1.21361 0.93099 0.96570 0.86890 1.45868 1.12148 1.56892 1.20444 1.20367 0.88178 0.79393 0.83048 1.90675 1.14686 1.59140 1.78307 1.20955 0.92194 1.00636 0.87213 1.44721 1.12468 1.61276 1.19979 1.15755 0.85053 0.78718 0.79751 1.90964 1.13717 1.61096 1.79193 1.42576 1.12537 1.55371 1.22911 1.17515 0.96785 0.91824 0.86418 1.20873 1.03120 1.02173 0.90963 1.20916 0.96772 0.95902 0.98345 1.21129 0.97782 0.99826 0.97287 1.21066 0.99385 0.98866 0.92583 1.21228 0.97577 0.94609 1.00763 1.23385 0.97400 1.03462 0.98396 1.23085 0.97952 0.95779 1.05493 0.93400 0.77681 0.91853 0.90220 0.76090 0.88078 0.88285 0.75272 0.75582 0.85748 0.85756 0.86083 0.85762 0.84566 0.88547 0.89933 0.89436 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.94 13.06 55.49 0.72 -26.22 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.32 9.52 -15.06 -0.14 -6.46 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 N -0.69 -15.88 5.49 -47.23 -0.26 -16.14 16 10 C 0.13 2.27 2.21 -131.82 -0.29 1.98 16 11 C 0.15 2.45 5.79 -4.04 -0.02 2.43 16 12 N -0.70 -9.84 5.44 -60.29 -0.33 -10.17 16 13 C 0.51 6.90 7.90 -10.98 -0.09 6.82 16 14 O -0.55 -9.06 15.66 5.56 0.09 -8.97 16 15 C 0.12 1.31 6.15 -5.20 -0.03 1.28 16 16 N -0.73 -7.85 5.53 -66.42 -0.37 -8.22 16 17 C 0.71 8.40 8.31 -86.92 -0.72 7.67 16 18 O -0.57 -8.63 14.01 5.29 0.07 -8.56 16 19 N -0.69 -6.37 5.35 -14.23 -0.08 -6.45 16 20 C 0.17 1.71 6.28 -83.69 -0.53 1.18 16 21 C -0.15 -1.24 9.96 -39.40 -0.39 -1.63 16 22 C -0.10 -0.75 10.04 -39.61 -0.40 -1.15 16 23 C -0.14 -1.09 10.04 -39.55 -0.40 -1.49 16 24 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 25 C -0.12 -1.31 8.66 -39.39 -0.34 -1.65 16 26 C -0.19 -3.06 10.11 -26.70 -0.27 -3.33 16 27 C -0.19 -2.75 9.92 -26.69 -0.26 -3.02 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.39 9.56 8.04 -40.82 -0.33 9.23 16 30 H 0.06 1.01 7.89 -51.93 -0.41 0.60 16 31 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 32 H 0.40 5.02 8.35 -40.82 -0.34 4.68 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.41 4.10 7.46 -40.82 -0.30 3.80 16 36 H 0.41 2.56 8.83 -40.82 -0.36 2.20 16 37 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.14 1.64 6.40 -52.49 -0.34 1.31 16 42 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 43 H 0.08 1.20 8.05 -51.92 -0.42 0.78 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -32.92 387.64 -9.96 -42.88 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -6.25 Total: 18.15 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -4.38 Total: 1.00 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.31 Total: -67.19 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.16 Total: -17.53 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.92 -9.96 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323509132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.913 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds